Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0313
         (671 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8342| Best HMM Match : FKBP_C (HMM E-Value=0)                       86   3e-17
SB_54763| Best HMM Match : No HMM Matches (HMM E-Value=.)              63   2e-10
SB_19729| Best HMM Match : No HMM Matches (HMM E-Value=.)              63   2e-10
SB_42625| Best HMM Match : FKBP_C (HMM E-Value=0.0058)                 40   0.002
SB_55745| Best HMM Match : FKBP_C (HMM E-Value=5.9)                    37   0.013
SB_21064| Best HMM Match : TPR_2 (HMM E-Value=3.5e-09)                 36   0.039
SB_53649| Best HMM Match : FKBP_C (HMM E-Value=4.1e-05)                27   1.1  
SB_26916| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.0  
SB_49600| Best HMM Match : RVT_1 (HMM E-Value=0)                       29   4.5  
SB_26135| Best HMM Match : RVT_1 (HMM E-Value=0.072)                   29   4.5  
SB_19328| Best HMM Match : RVT_1 (HMM E-Value=2e-36)                   29   4.5  
SB_19117| Best HMM Match : XPG_N (HMM E-Value=1.8)                     29   4.5  
SB_2897| Best HMM Match : RVT_1 (HMM E-Value=3e-33)                    29   4.5  
SB_1793| Best HMM Match : RVT_1 (HMM E-Value=0)                        29   4.5  
SB_43541| Best HMM Match : RVT_1 (HMM E-Value=0)                       29   4.5  
SB_40765| Best HMM Match : DX (HMM E-Value=1.4)                        29   4.5  
SB_38808| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.5  
SB_29272| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.5  
SB_20120| Best HMM Match : RVT_1 (HMM E-Value=0)                       29   4.5  
SB_18871| Best HMM Match : RVT_1 (HMM E-Value=0)                       29   4.5  
SB_37200| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  
SB_30168| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  

>SB_8342| Best HMM Match : FKBP_C (HMM E-Value=0)
          Length = 266

 Score = 85.8 bits (203), Expect = 3e-17
 Identities = 41/100 (41%), Positives = 62/100 (62%)
 Frame = +3

Query: 144 ITRXGEGTETPNQGCHVSVHYVGTLLDGTKFDSSRDRNEPFEFCLGKDGVIEAWKIGVPT 323
           +++  + T   + G  +S+HY G L +G KFDSS DR + F+F LGK  VI+ W+ G+  
Sbjct: 32  VSKPEKCTRKTHVGDTLSMHYTGRLANGNKFDSSLDRGKTFDFTLGKGMVIQGWEQGLLD 91

Query: 324 MKKGEVCILTCAPEYAYGASGSPPKIPPNATLQFEIEMID 443
           M  GE   LT  P  AYG +G+   IPP+ATL  ++E+++
Sbjct: 92  MCIGEKRKLTIPPHLAYGENGAGAAIPPHATLYMDVELVE 131


>SB_54763| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1190

 Score = 63.3 bits (147), Expect = 2e-10
 Identities = 33/64 (51%), Positives = 38/64 (59%)
 Frame = +3

Query: 93   DQGVDITKNGDRGVLKRITRXGEGTETPNQGCHVSVHYVGTLLDGTKFDSSRDRNEPFEF 272
            + GVDIT   D GV KRI   G G E  N GC V V YVG  L+G +FDS+     PFEF
Sbjct: 861  EYGVDITPKKDGGVRKRILSEGHGAEMANVGCTVVVRYVGKFLNGEEFDSNTG-GVPFEF 919

Query: 273  CLGK 284
             LG+
Sbjct: 920  VLGE 923


>SB_19729| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 299

 Score = 62.9 bits (146), Expect = 2e-10
 Identities = 41/116 (35%), Positives = 59/116 (50%), Gaps = 7/116 (6%)
 Frame = +3

Query: 183 GCHVSVHYVGTLLDGTKFDSSRDRN---EPFEFCLGKDGVIEAWKIGVPTMKKGEVCILT 353
           G HV VHY G + DG+ FD++RD     +PFEF +G   VI+ ++ GV  M  G+   + 
Sbjct: 118 GDHVVVHYTGWMQDGSLFDTTRDHRKGYQPFEFTIGGGTVIKGFEQGVTGMCVGQKRKIV 177

Query: 354 CAPEYAYGASGS---PPKIP-PNATLQFEIEMIDWRLEDLSPTKNKGILRHILEAG 509
             P  AYG  GS   P  +   N TL + +E+ D R     P  +  +  H+ E G
Sbjct: 178 IPPALAYGKKGSGDVPGNLDLTNTTLTYNLELFDVR----KPPPHSDMFSHMDENG 229


>SB_42625| Best HMM Match : FKBP_C (HMM E-Value=0.0058)
          Length = 84

 Score = 39.9 bits (89), Expect = 0.002
 Identities = 15/30 (50%), Positives = 22/30 (73%)
 Frame = +3

Query: 576 DSKIFDQRTVTFSLGEGTEHNICEGIERAL 665
           D K+F++R V F+ GEGTE  + EG+E A+
Sbjct: 8   DGKVFEEREVEFTFGEGTEAGLLEGVEEAI 37


>SB_55745| Best HMM Match : FKBP_C (HMM E-Value=5.9)
          Length = 110

 Score = 37.1 bits (82), Expect = 0.013
 Identities = 17/46 (36%), Positives = 28/46 (60%)
 Frame = +3

Query: 309 IGVPTMKKGEVCILTCAPEYAYGASGSPPKIPPNATLQFEIEMIDW 446
           IGV TM+KGE+       EY +   G  P++ P AT+ +E+E++ +
Sbjct: 8   IGVSTMRKGELSRFLFDKEYVFKDLGCEPRV-PGATVMWEVELLSF 52


>SB_21064| Best HMM Match : TPR_2 (HMM E-Value=3.5e-09)
          Length = 372

 Score = 35.5 bits (78), Expect = 0.039
 Identities = 16/42 (38%), Positives = 23/42 (54%)
 Frame = +3

Query: 231 KFDSSRDRNEPFEFCLGKDGVIEAWKIGVPTMKKGEVCILTC 356
           + D SR   +PFE  +GK   +E W+  + TM+  EV   TC
Sbjct: 111 ELDCSRKIGQPFELLMGKKFKLEIWEELIKTMRVKEVARFTC 152


>SB_53649| Best HMM Match : FKBP_C (HMM E-Value=4.1e-05)
          Length = 639

 Score = 27.5 bits (58), Expect(2) = 1.1
 Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
 Frame = +3

Query: 183 GCHVSVHYVGTLLD----GTKFDSSRDRNEPFEFCLGKDGVIEAWKIGVPT 323
           G  V V Y G LL+    G  FDS+   ++ F+F  GK  VI+     VP+
Sbjct: 122 GDAVEVKYTGWLLENGNFGKVFDSNAGTDKTFKFKTGKGKVIKGIPGRVPS 172



 Score = 21.8 bits (44), Expect(2) = 1.1
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = +3

Query: 384 GSPPKIPPNATLQFEIEMI 440
           G P ++P  + L FE+E++
Sbjct: 165 GIPGRVPSESPLLFEVEVL 183


>SB_26916| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1732

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 16/79 (20%), Positives = 35/79 (44%)
 Frame = +3

Query: 282 KDGVIEAWKIGVPTMKKGEVCILTCAPEYAYGASGSPPKIPPNATLQFEIEMIDWRLEDL 461
           +D +++ +K      KK   C++    E     S +PP + P+    F   + D  +  +
Sbjct: 626 EDPILDIFKYKKKERKKNRFCVIPPFRECPRKLSSNPPALDPHTLDVFTPSIADADIAGM 685

Query: 462 SPTKNKGILRHILEAGTGL 518
           + T++ G+    +  GT +
Sbjct: 686 TRTRDAGLPEANMVMGTAI 704


>SB_49600| Best HMM Match : RVT_1 (HMM E-Value=0)
          Length = 1273

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 14/29 (48%), Positives = 16/29 (55%)
 Frame = +2

Query: 326 EEG*SLHSDLCS*ICLRSKWQPTKNPSKC 412
           E+G  L  DL      +SKWQ   NPSKC
Sbjct: 811 EDGDQLQEDLKRLEMWQSKWQMVFNPSKC 839


>SB_26135| Best HMM Match : RVT_1 (HMM E-Value=0.072)
          Length = 375

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 14/29 (48%), Positives = 16/29 (55%)
 Frame = +2

Query: 326 EEG*SLHSDLCS*ICLRSKWQPTKNPSKC 412
           E+G  L  DL      +SKWQ   NPSKC
Sbjct: 117 EDGDQLQEDLKRLEMWQSKWQMVFNPSKC 145


>SB_19328| Best HMM Match : RVT_1 (HMM E-Value=2e-36)
          Length = 295

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 14/29 (48%), Positives = 16/29 (55%)
 Frame = +2

Query: 326 EEG*SLHSDLCS*ICLRSKWQPTKNPSKC 412
           E+G  L  DL      +SKWQ   NPSKC
Sbjct: 213 EDGDQLQEDLKRLEMWQSKWQMVFNPSKC 241


>SB_19117| Best HMM Match : XPG_N (HMM E-Value=1.8)
          Length = 361

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 14/29 (48%), Positives = 16/29 (55%)
 Frame = +2

Query: 326 EEG*SLHSDLCS*ICLRSKWQPTKNPSKC 412
           E+G  L  DL      +SKWQ   NPSKC
Sbjct: 103 EDGDQLQEDLKRLEMWQSKWQMVFNPSKC 131


>SB_2897| Best HMM Match : RVT_1 (HMM E-Value=3e-33)
          Length = 609

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 14/29 (48%), Positives = 16/29 (55%)
 Frame = +2

Query: 326 EEG*SLHSDLCS*ICLRSKWQPTKNPSKC 412
           E+G  L  DL      +SKWQ   NPSKC
Sbjct: 349 EDGDQLQEDLKRLEMWQSKWQMVFNPSKC 377


>SB_1793| Best HMM Match : RVT_1 (HMM E-Value=0)
          Length = 864

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 14/29 (48%), Positives = 16/29 (55%)
 Frame = +2

Query: 326 EEG*SLHSDLCS*ICLRSKWQPTKNPSKC 412
           E+G  L  DL      +SKWQ   NPSKC
Sbjct: 533 EDGDQLQEDLKRLEMWQSKWQMVFNPSKC 561


>SB_43541| Best HMM Match : RVT_1 (HMM E-Value=0)
          Length = 581

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 14/29 (48%), Positives = 16/29 (55%)
 Frame = +2

Query: 326 EEG*SLHSDLCS*ICLRSKWQPTKNPSKC 412
           E+G  L  DL      +SKWQ   NPSKC
Sbjct: 323 EDGDQLQEDLKRLEMWQSKWQMVFNPSKC 351


>SB_40765| Best HMM Match : DX (HMM E-Value=1.4)
          Length = 278

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 14/29 (48%), Positives = 16/29 (55%)
 Frame = +2

Query: 326 EEG*SLHSDLCS*ICLRSKWQPTKNPSKC 412
           E+G  L  DL      +SKWQ   NPSKC
Sbjct: 20  EDGDQLQEDLKRLEMWQSKWQMVFNPSKC 48


>SB_38808| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 824

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 14/29 (48%), Positives = 16/29 (55%)
 Frame = +2

Query: 326 EEG*SLHSDLCS*ICLRSKWQPTKNPSKC 412
           E+G  L  DL      +SKWQ   NPSKC
Sbjct: 566 EDGDQLQEDLKRLEMWQSKWQMVFNPSKC 594


>SB_29272| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 719

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 14/29 (48%), Positives = 16/29 (55%)
 Frame = +2

Query: 326 EEG*SLHSDLCS*ICLRSKWQPTKNPSKC 412
           E+G  L  DL      +SKWQ   NPSKC
Sbjct: 525 EDGDQLQEDLKRLEMWQSKWQMVFNPSKC 553


>SB_20120| Best HMM Match : RVT_1 (HMM E-Value=0)
          Length = 666

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 14/29 (48%), Positives = 16/29 (55%)
 Frame = +2

Query: 326 EEG*SLHSDLCS*ICLRSKWQPTKNPSKC 412
           E+G  L  DL      +SKWQ   NPSKC
Sbjct: 408 EDGDQLQEDLKRLEMWQSKWQMVFNPSKC 436


>SB_18871| Best HMM Match : RVT_1 (HMM E-Value=0)
          Length = 546

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 14/29 (48%), Positives = 16/29 (55%)
 Frame = +2

Query: 326 EEG*SLHSDLCS*ICLRSKWQPTKNPSKC 412
           E+G  L  DL      +SKWQ   NPSKC
Sbjct: 341 EDGDQLQEDLKRLEMWQSKWQMVFNPSKC 369


>SB_37200| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 908

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 16/58 (27%), Positives = 27/58 (46%)
 Frame = +3

Query: 402 PPNATLQFEIEMIDWRLEDLSPTKNKGILRHILEAGTGLDSPNDGALVTVELEGRLQG 575
           PP+   + EI  +  R   L+P  +  ++    E  +G D  N    V  +L+GR+ G
Sbjct: 729 PPDMKARLEILRVHTRFSPLAPDVDLSVIAEGTELYSGADLENLCREVYTDLDGRVIG 786


>SB_30168| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6863

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = -3

Query: 459  DLPISNQSFQSQTAMLHLEGFLVGCHLLRRHIQEHKSE 346
            DL  S+ + QS T    LEG + GC  L   + E + E
Sbjct: 5920 DLSQSSSAVQSTTLESQLEGLMQGCGRLEGEVAEKQEE 5957


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,557,746
Number of Sequences: 59808
Number of extensions: 532353
Number of successful extensions: 1337
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1232
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1334
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1721264831
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)