Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0312
(614 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_A6BM65 Cluster: Cytochrome oxidase subunit I; n=1; Peri... 192 6e-48
UniRef50_Q4FH11 Cluster: Cytochrome c oxidase subunit I; n=26; B... 187 2e-46
UniRef50_Q30DC3 Cluster: Cytochrome c oxidase subunit I; n=30; P... 172 6e-42
UniRef50_Q9MCX7 Cluster: Cytochrome c oxidase subunit I; n=181; ... 153 2e-36
UniRef50_Q8SK39 Cluster: Cytochrome c oxidase subunit I; n=455; ... 149 7e-35
UniRef50_Q9MIY8 Cluster: Cytochrome c oxidase subunit 1; n=861; ... 149 7e-35
UniRef50_A2T435 Cluster: Cytochrome c oxidase subunit I; n=126; ... 146 3e-34
UniRef50_Q6ZLV6 Cluster: Cytochrome c oxidase subunit I; n=941; ... 146 4e-34
UniRef50_P00395 Cluster: Cytochrome c oxidase subunit 1; n=44498... 144 1e-33
UniRef50_Q58PB7 Cluster: Cytochrome c oxidase subunit I; n=106; ... 142 8e-33
UniRef50_P60620 Cluster: Cytochrome c oxidase subunit 1; n=2931;... 134 2e-30
UniRef50_Q0H8Y3 Cluster: Probable intron-encoded endonuclease aI... 133 3e-30
UniRef50_Q0H8Y1 Cluster: Probable intron-encoded endonuclease aI... 133 3e-30
UniRef50_P48866 Cluster: Cytochrome c oxidase subunit 1; n=179; ... 132 8e-30
UniRef50_Q0H8Y0 Cluster: Probable intron-encoded endonuclease aI... 128 1e-28
UniRef50_Q5GGF4 Cluster: Cytochrome c oxidase subunit I; n=2742;... 127 2e-28
UniRef50_Q9ZZX1 Cluster: Intron-encoded DNA endonuclease aI5 alp... 117 2e-25
UniRef50_P03878 Cluster: Intron-encoded DNA endonuclease aI4 pre... 117 2e-25
UniRef50_A7UG06 Cluster: Cytochrome oxidase subunits 1 and 2 pol... 116 4e-25
UniRef50_Q7YEU6 Cluster: Endonuclease; n=4; Fungi/Metazoa group|... 115 8e-25
UniRef50_Q8M352 Cluster: I-SceII DNA endonuclease-like protein; ... 110 2e-23
UniRef50_Q9G8S1 Cluster: Cytochrome c oxidase subunit 1; n=1; Na... 109 5e-23
UniRef50_Q1XA94 Cluster: Cytochrome c oxidase subunit I; n=825; ... 109 7e-23
UniRef50_Q8SHP5 Cluster: Cytochrome c oxidase subunit I; n=15; F... 108 9e-23
UniRef50_Q9B6E6 Cluster: COX1-i5 protein; n=3; Fungi/Metazoa gro... 105 1e-21
UniRef50_Q6ED53 Cluster: Cox1-i5 protein; n=2; Candida stellata|... 103 4e-21
UniRef50_Q6ED52 Cluster: Cox1-i4 protein; n=1; Candida stellata|... 103 4e-21
UniRef50_Q6ED51 Cluster: Cox-i3 protein; n=1; Candida stellata|R... 103 4e-21
UniRef50_Q6ED50 Cluster: Cox-i2 protein; n=1; Candida stellata|R... 103 4e-21
UniRef50_Q951H1 Cluster: Cytochrome c oxidase subunit I; n=388; ... 97 3e-19
UniRef50_Q9MLW1 Cluster: Cytochrome c oxidase subunit I; n=5; Na... 95 2e-18
UniRef50_Q1NET5 Cluster: Cytochrome-c oxidase; n=3; Alphaproteob... 93 5e-18
UniRef50_Q28SZ5 Cluster: Cytochrome-c oxidase; n=50; cellular or... 91 2e-17
UniRef50_Q59IQ0 Cluster: Cytochrome c oxidase subunit I; n=1; Wa... 88 1e-16
UniRef50_Q5W914 Cluster: Cytochrome c oxidase subunit I; n=9; Co... 83 7e-15
UniRef50_O47573 Cluster: Cytochrome c oxidase subunit I; n=42; N... 82 1e-14
UniRef50_P14544 Cluster: Cytochrome c oxidase subunit 1; n=7; Eu... 81 3e-14
UniRef50_Q3L2S5 Cluster: Cytochrome c oxidase subunit I; n=1; Ae... 80 4e-14
UniRef50_Q0H8X8 Cluster: Probable intron-encoded endonuclease aI... 79 1e-13
UniRef50_Q35061 Cluster: CoxI intron4 ORF; n=3; Marchantia polym... 75 2e-12
UniRef50_Q8HCX2 Cluster: Cytochrome c oxidase subunit I; n=1; Ap... 74 3e-12
UniRef50_Q9B6E4 Cluster: COX1-i3 protein; n=2; Yarrowia lipolyti... 65 1e-09
UniRef50_Q18JR5 Cluster: Cytochrome-c-like terminal oxidase, sub... 64 2e-09
UniRef50_A6XEV4 Cluster: Cytochrome c oxidase subunit 1; n=1; Mu... 61 2e-08
UniRef50_Q02766 Cluster: Cytochrome c oxidase subunit 1; n=107; ... 61 2e-08
UniRef50_Q36097 Cluster: Cytochrome c oxidase subunit 1; n=3; Th... 60 5e-08
UniRef50_A1XI88 Cluster: Cytochrome c oxidase subunit I; n=1; My... 59 7e-08
UniRef50_Q5K464 Cluster: Putative DNA endonuclease; n=1; Kluyver... 59 7e-08
UniRef50_A7H8L4 Cluster: Cytochrome c oxidase subunit I type; n=... 59 9e-08
UniRef50_P34956 Cluster: Quinol oxidase subunit 1 (EC 1.10.3.-) ... 57 3e-07
UniRef50_Q1CZF1 Cluster: Cytochrome c oxidase, subunit I; n=1; M... 57 4e-07
UniRef50_Q34463 Cluster: Cytochrome oxidase subunit I; n=3; Eugl... 56 7e-07
UniRef50_P33518 Cluster: Cytochrome c oxidase polypeptide 1; n=4... 56 7e-07
UniRef50_Q9YDX6 Cluster: Heme-copper oxidase subunit I+III; n=1;... 56 7e-07
UniRef50_A7HEB5 Cluster: Cytochrome-c oxidase; n=2; Cystobacteri... 56 9e-07
UniRef50_Q9XKD7 Cluster: Cytochrome c oxidase subunit I; n=1; Di... 56 9e-07
UniRef50_Q79VD7 Cluster: Cytochrome c oxidase subunit 1; n=93; A... 55 1e-06
UniRef50_O67935 Cluster: Cytochrome c oxidase subunit I; n=1; Aq... 53 5e-06
UniRef50_A6C5X9 Cluster: Cytochrome caa3 oxidase; n=3; Bacteria|... 53 5e-06
UniRef50_Q9B8X8 Cluster: Cytochrome c oxidase subunit I; n=517; ... 52 8e-06
UniRef50_A5UVJ0 Cluster: Cytochrome-c oxidase; n=2; Roseiflexus|... 52 1e-05
UniRef50_A3ZTG1 Cluster: Cytochrome c oxidase subunit I; n=1; Bl... 49 1e-04
UniRef50_Q98P35 Cluster: Cytochrome C oxidase subunit I; n=16; c... 48 2e-04
UniRef50_Q0I8U1 Cluster: Cytochrome c oxidase subunit I; n=16; B... 48 2e-04
UniRef50_Q8ZXD1 Cluster: Cytochrome C oxidase subunit I /III; n=... 47 3e-04
UniRef50_Q06473 Cluster: Cytochrome c oxidase subunit 1 (EC 1.9.... 47 4e-04
UniRef50_P98005 Cluster: Cytochrome c oxidase polypeptide I+III ... 47 4e-04
UniRef50_A7BSH8 Cluster: Cytochrome c oxidase aa3, subunit 1; n=... 46 5e-04
UniRef50_Q7NQZ0 Cluster: Cytochrome o ubiquinol oxidase, subunit... 45 0.002
UniRef50_Q9WWR2 Cluster: Ubiquinol oxidase subunit 1 (EC 1.10.3.... 45 0.002
UniRef50_A3SJL2 Cluster: QoxA, Quinol oxidase subunit I; n=2; Rh... 44 0.003
UniRef50_P24010 Cluster: Cytochrome c oxidase subunit 1 (EC 1.9.... 44 0.003
UniRef50_Q05FH1 Cluster: Cytochrome O ubiquinol oxidase subunit ... 42 0.009
UniRef50_Q0AI64 Cluster: Cytochrome-c oxidase; n=3; Proteobacter... 42 0.012
UniRef50_Q5V018 Cluster: Cytochrome c oxidase subunit I; n=3; Ha... 42 0.012
UniRef50_Q9Z605 Cluster: Quinol oxidase subunit I; n=15; Proteob... 41 0.020
UniRef50_A0TRU9 Cluster: Cytochrome-c oxidase; n=30; Proteobacte... 40 0.062
UniRef50_Q94WV3 Cluster: Cytochrome oxidase subunit I; n=1; Pach... 40 0.062
UniRef50_P98000 Cluster: Alternative cytochrome c oxidase subuni... 40 0.062
UniRef50_Q9RR77 Cluster: Cytochrome c oxidase, subunit I; n=2; D... 39 0.082
UniRef50_Q67ML1 Cluster: Cytochrome C oxidase subunit I; n=17; B... 39 0.082
UniRef50_A0VUI8 Cluster: Cytochrome-c oxidase; n=1; Dinoroseobac... 39 0.082
UniRef50_A0RZ19 Cluster: Heme/copper-type cytochrome/quinol oxid... 39 0.11
UniRef50_A6C0L1 Cluster: Cytochrome c oxidase subunit I; n=1; Pl... 38 0.19
UniRef50_P11947 Cluster: Cytochrome c oxidase subunit 1; n=48; O... 38 0.19
UniRef50_Q1H1C1 Cluster: Cytochrome-c oxidase; n=1; Methylobacil... 37 0.33
UniRef50_A1ZL77 Cluster: Alternative Cytochrome c oxidase polype... 37 0.33
UniRef50_Q6KZG3 Cluster: Cytochrome c oxidase polypeptide I/III;... 37 0.44
UniRef50_Q1IUK7 Cluster: Cytochrome-c oxidase; n=2; Acidobacteri... 33 5.4
UniRef50_Q2ABI9 Cluster: NADH-ubiquinone oxidoreductase chain 2;... 33 7.1
UniRef50_Q8ID15 Cluster: Putative uncharacterized protein MAL13P... 32 9.4
UniRef50_P39481 Cluster: Quinol oxidase subunit 1/3; n=5; Sulfol... 32 9.4
>UniRef50_A6BM65 Cluster: Cytochrome oxidase subunit I; n=1;
Periclimenes thermohydrophilus|Rep: Cytochrome oxidase
subunit I - Periclimenes thermohydrophilus
Length = 217
Score = 192 bits (468), Expect = 6e-48
Identities = 107/192 (55%), Positives = 124/192 (64%)
Frame = -2
Query: 613 IVIAPAKTGSDNNNKNAVIPTAHTNKGN*SNDILFNRXXXXXXXXXXXXXIDEIPAKCSE 434
IVIAPA TGS++N+K AV T TN G S I +R I+E PAKC+E
Sbjct: 27 IVIAPASTGSESNSKMAVSNTDQTNSGMRSMVIPADRMLITVVMKFTAPKIEETPAKCNE 86
Query: 433 KIARSTDLPLCAILDESGG*TVHPVPAPFSTILLEINNIREGGRSQNLILFIRGNAISGA 254
KI STD P CAI SGG TVHPVP P STI L + ++EGG +QNL+LFIRGNA+SGA
Sbjct: 87 KIPMSTDAPACAIPLASGGYTVHPVPTPLSTIPLNKSKVKEGGSNQNLMLFIRGNAMSGA 146
Query: 253 PSIRGTNQFPNPPXXXXXXXXXXXXKACAVTIVL*I*SSPINDPGFPNSARIKSLKDVPI 74
P++ GTNQFPNPP KA AVT+ L I S PI PG PNSARIKSL DVP
Sbjct: 147 PNMSGTNQFPNPPIMIGMTMKKIITKAWAVTMTL-IWSFPIKLPGCPNSARIKSLSDVPT 205
Query: 73 IPDQIPKIKYNV 38
+P PK+KYNV
Sbjct: 206 MPAHAPKMKYNV 217
>UniRef50_Q4FH11 Cluster: Cytochrome c oxidase subunit I; n=26;
Bilateria|Rep: Cytochrome c oxidase subunit I - Samia
cynthia ricini (Indian eri silkmoth)
Length = 510
Score = 187 bits (456), Expect = 2e-46
Identities = 106/197 (53%), Positives = 112/197 (56%)
Frame = +3
Query: 24 HKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXX 203
HKDIGTLY AELG PGSLIGDDQIYNTIVTAHA
Sbjct: 9 HKDIGTLYFIFGIWAGMVGTSLSLLIRAELGTPGSLIGDDQIYNTIVTAHAFIMIFFMVM 68
Query: 204 XXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPP 383
N LVPL+LGAPD+AFPR+NN+ F IVENGAGTG TVYPP
Sbjct: 69 PIMIGGFGNWLVPLMLGAPDMAFPRMNNMSFWLLPPSLTLLISSSIVENGAGTGWTVYPP 128
Query: 384 LSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGIT 563
LSSNIAH G SVDLAIFSLHLAGISS SFDQ+PLFV AVGIT
Sbjct: 129 LSSNIAHGGSSVDLAIFSLHLAGISSILGAINFITTIINMRMNNLSFDQMPLFVWAVGIT 188
Query: 564 AFXXXXXXXXXAGAITI 614
AF AGAIT+
Sbjct: 189 AFLLLLSLPVLAGAITM 205
>UniRef50_Q30DC3 Cluster: Cytochrome c oxidase subunit I; n=30;
Panarthropoda|Rep: Cytochrome c oxidase subunit I -
Pagyris cymothoe
Length = 487
Score = 172 bits (418), Expect = 6e-42
Identities = 94/169 (55%), Positives = 102/169 (60%)
Frame = +3
Query: 108 ELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINN 287
ELG PGSLIGDDQIYNTIVTAHA N L+PL+LGAPD+AFPR+NN
Sbjct: 13 ELGTPGSLIGDDQIYNTIVTAHAFIMIFFMVMPIMIGGFGNWLIPLMLGAPDMAFPRMNN 72
Query: 288 IRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXX 467
+ F IVENGAGTG TVYPPLSSNIAH G SVDLAIFSLHLAGISS
Sbjct: 73 MSFWLLPPSLILLISSSIVENGAGTGWTVYPPLSSNIAHGGSSVDLAIFSLHLAGISSIL 132
Query: 468 XXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITI 614
SFDQ+PLF+ AVGITA AGAIT+
Sbjct: 133 GAINFITTIINMRINKMSFDQMPLFIWAVGITALLLLLSLPVLAGAITM 181
>UniRef50_Q9MCX7 Cluster: Cytochrome c oxidase subunit I; n=181;
Coelomata|Rep: Cytochrome c oxidase subunit I - Piculus
rubiginosus
Length = 504
Score = 153 bits (372), Expect = 2e-36
Identities = 91/197 (46%), Positives = 102/197 (51%)
Frame = +3
Query: 24 HKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXX 203
HKDIGTLY AELG PG+L+GDDQIYN IVTAHA
Sbjct: 13 HKDIGTLYLIFGAWAGMIGTALSLLIRAELGQPGTLLGDDQIYNVIVTAHAFVMIFFMVM 72
Query: 204 XXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPP 383
N LVPL++GAPD+AFPR+NN+ F VE GAGTG TVYPP
Sbjct: 73 PIMIGGFGNWLVPLMIGAPDMAFPRMNNMSFWLXPPSFLLLLASSTVEAGAGTGWTVYPP 132
Query: 384 LSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGIT 563
L+ N+AH G SVDLAIFSLHLAGISS S Q PLFV +V IT
Sbjct: 133 LAGNLAHAGASVDLAIFSLHLAGISSILGAINFITTAINMKPPAISQYQTPLFVWSVLIT 192
Query: 564 AFXXXXXXXXXAGAITI 614
A A IT+
Sbjct: 193 AVLLLLSLPVLAAGITM 209
>UniRef50_Q8SK39 Cluster: Cytochrome c oxidase subunit I; n=455;
cellular organisms|Rep: Cytochrome c oxidase subunit I -
Pandaka lidwilli
Length = 507
Score = 149 bits (360), Expect = 7e-35
Identities = 87/197 (44%), Positives = 99/197 (50%)
Frame = +3
Query: 24 HKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXX 203
HKDIGTLY AEL PG+L+GDDQIYN IVTAHA
Sbjct: 1 HKDIGTLYLIFGAWAGMVGTALSLLIRAELSQPGALLGDDQIYNVIVTAHAFVMIFFMVM 60
Query: 204 XXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPP 383
N L+PL++GAPD+AFPR+NN+ F +E GAGTG TVYPP
Sbjct: 61 PIMIGGFGNWLIPLMIGAPDMAFPRMNNMSFWLLPPSFLLLLASSGIEAGAGTGWTVYPP 120
Query: 384 LSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGIT 563
L+ N+AH G SVDL IFSLHLAGISS S Q PLFV AV IT
Sbjct: 121 LAGNLAHAGASVDLTIFSLHLAGISSILGAINFITTIMNMKPPAISQYQTPLFVWAVLIT 180
Query: 564 AFXXXXXXXXXAGAITI 614
A A IT+
Sbjct: 181 AVLLLLSLPVLAAGITM 197
>UniRef50_Q9MIY8 Cluster: Cytochrome c oxidase subunit 1; n=861;
root|Rep: Cytochrome c oxidase subunit 1 - Danio rerio
(Zebrafish) (Brachydanio rerio)
Length = 516
Score = 149 bits (360), Expect = 7e-35
Identities = 87/197 (44%), Positives = 99/197 (50%)
Frame = +3
Query: 24 HKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXX 203
HKDIGTLY AEL PG+L+GDDQIYN IVTAHA
Sbjct: 12 HKDIGTLYLVFGAWAGMVGTALSLLIRAELSQPGALLGDDQIYNVIVTAHAFVMIFFMVM 71
Query: 204 XXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPP 383
N LVPL++GAPD+AFPR+NN+ F VE GAGTG TVYPP
Sbjct: 72 PILIGGFGNWLVPLMIGAPDMAFPRMNNMSFWLLPPSFLLLLASSGVEAGAGTGWTVYPP 131
Query: 384 LSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGIT 563
L+ N+AH G SVDL IFSLHLAG+SS S Q PLFV AV +T
Sbjct: 132 LAGNLAHAGASVDLTIFSLHLAGVSSILGAINFITTTINMKPPTISQYQTPLFVWAVLVT 191
Query: 564 AFXXXXXXXXXAGAITI 614
A A IT+
Sbjct: 192 AVLLLLSLPVLAAGITM 208
>UniRef50_A2T435 Cluster: Cytochrome c oxidase subunit I; n=126;
Fungi/Metazoa group|Rep: Cytochrome c oxidase subunit I
- Placozoan sp. BZ2423
Length = 498
Score = 146 bits (355), Expect = 3e-34
Identities = 83/197 (42%), Positives = 101/197 (51%)
Frame = +3
Query: 24 HKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXX 203
HKDIG+LY EL +PGS++GDD +YN IVTAHA
Sbjct: 13 HKDIGSLYLVFGALSGAIGTAFSMLIRLELSSPGSMLGDDHLYNVIVTAHAFVMIFFLVM 72
Query: 204 XXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPP 383
N VPL++GAPD+AFPR+NNI F +VE GAGTG TVYPP
Sbjct: 73 PTMIGGFGNWFVPLMIGAPDMAFPRLNNISFWLLPPALFLLLGSSLVEQGAGTGWTVYPP 132
Query: 384 LSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGIT 563
L+S AH G SVD+AIFSLHLAG+SS + ++PLFV +V IT
Sbjct: 133 LASIQAHSGGSVDMAIFSLHLAGLSSILGAMNFITTVMNMRTPGMTMSRIPLFVWSVLIT 192
Query: 564 AFXXXXXXXXXAGAITI 614
A AGAIT+
Sbjct: 193 AILLLLSLPVLAGAITM 209
>UniRef50_Q6ZLV6 Cluster: Cytochrome c oxidase subunit I; n=941;
Eukaryota|Rep: Cytochrome c oxidase subunit I -
Ophisurus macrorhynchos
Length = 546
Score = 146 bits (354), Expect = 4e-34
Identities = 85/197 (43%), Positives = 99/197 (50%)
Frame = +3
Query: 24 HKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXX 203
HKDIGTLY AEL PG+L+GDDQIYN IVTAHA
Sbjct: 12 HKDIGTLYLVFGAWAGMVGTALSLLIRAELSQPGALLGDDQIYNVIVTAHAFVMIFFMVM 71
Query: 204 XXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPP 383
N LVPL++GAPD+AFPR+NN+ F VE GAGTG TVYPP
Sbjct: 72 PVMIGGFGNWLVPLMIGAPDMAFPRMNNMSFWLLPPSFLLLLASSGVEAGAGTGWTVYPP 131
Query: 384 LSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGIT 563
L+ N+AH G SVDL IFSLHLAG+SS + Q PLFV +V +T
Sbjct: 132 LAGNLAHAGASVDLTIFSLHLAGVSSILGAINFITTIINMKPPAITQYQTPLFVWSVLVT 191
Query: 564 AFXXXXXXXXXAGAITI 614
A A IT+
Sbjct: 192 AVLLLLSLPVLAAGITM 208
>UniRef50_P00395 Cluster: Cytochrome c oxidase subunit 1; n=44498;
root|Rep: Cytochrome c oxidase subunit 1 - Homo sapiens
(Human)
Length = 513
Score = 144 bits (349), Expect = 1e-33
Identities = 84/197 (42%), Positives = 99/197 (50%)
Frame = +3
Query: 24 HKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXX 203
HKDIGTLY AELG PG+L+G+D IYN IVTAHA
Sbjct: 12 HKDIGTLYLLFGAWAGVLGTALSLLIRAELGQPGNLLGNDHIYNVIVTAHAFVMIFFMVM 71
Query: 204 XXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPP 383
N LVPL++GAPD+AFPR+NN+ F +VE GAGTG TVYPP
Sbjct: 72 PIMIGGFGNWLVPLMIGAPDMAFPRMNNMSFWLLPPSLLLLLASAMVEAGAGTGWTVYPP 131
Query: 384 LSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGIT 563
L+ N +H G SVDL IFSLHLAG+SS + Q PLFV +V IT
Sbjct: 132 LAGNYSHPGASVDLTIFSLHLAGVSSILGAINFITTIINMKPPAMTQYQTPLFVWSVLIT 191
Query: 564 AFXXXXXXXXXAGAITI 614
A A IT+
Sbjct: 192 AVLLLLSLPVLAAGITM 208
>UniRef50_Q58PB7 Cluster: Cytochrome c oxidase subunit I; n=106;
Bilateria|Rep: Cytochrome c oxidase subunit I -
Homalopoma maculosa
Length = 219
Score = 142 bits (343), Expect = 8e-33
Identities = 79/169 (46%), Positives = 92/169 (54%)
Frame = +3
Query: 108 ELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINN 287
ELG PGS IG+DQ+YN +VTAHA N LVPL+LGAPD+AFPR+NN
Sbjct: 23 ELGQPGSFIGNDQLYNVVVTAHAFVMIFFLVMPMMIGGFGNWLVPLMLGAPDMAFPRLNN 82
Query: 288 IRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXX 467
+ F VE+GAGTG TVYPPLS N AH G SVDLAIFSLHLAG+SS
Sbjct: 83 MSFWFLPPSLSLLLMSAAVESGAGTGWTVYPPLSGNTAHAGPSVDLAIFSLHLAGVSSIL 142
Query: 468 XXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITI 614
+ + LFV +V ITA AGAIT+
Sbjct: 143 GAVNFITTVINMRWGAMKIELVSLFVWSVKITAILLLLSLPVLAGAITM 191
>UniRef50_P60620 Cluster: Cytochrome c oxidase subunit 1; n=2931;
cellular organisms|Rep: Cytochrome c oxidase subunit 1 -
Arabidopsis thaliana (Mouse-ear cress)
Length = 527
Score = 134 bits (323), Expect = 2e-30
Identities = 78/199 (39%), Positives = 98/199 (49%), Gaps = 2/199 (1%)
Frame = +3
Query: 24 HKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLI--GDDQIYNTIVTAHAXXXXXXX 197
HKDIGTLY EL PG I G+ Q+YN ++TAHA
Sbjct: 13 HKDIGTLYFIFGAIAGVMGTCFSVLIRMELARPGDQILGGNHQLYNVLITAHAFLMIFFM 72
Query: 198 XXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVY 377
N VP+++GAPD+AFPR+NNI F +VE G+GTG TVY
Sbjct: 73 VMPAMIGGFGNWFVPILIGAPDMAFPRLNNISFWLLPPSLLLLLSSALVEVGSGTGWTVY 132
Query: 378 PPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVG 557
PPLS +H G +VDLAIFSLHL+G+SS + +LPLFV +V
Sbjct: 133 PPLSGITSHSGGAVDLAIFSLHLSGVSSILGSINFITTIFNMRGPGMTMHRLPLFVWSVL 192
Query: 558 ITAFXXXXXXXXXAGAITI 614
+TAF AGAIT+
Sbjct: 193 VTAFLLLLSLPVLAGAITM 211
>UniRef50_Q0H8Y3 Cluster: Probable intron-encoded endonuclease aI8
precursor [Contains: Truncated non-functional cytochrome
oxidase 1; Intron-encoded endonuclease aI8 (EC
3.1.-.-)]; n=103; Eukaryota|Rep: Probable intron-encoded
endonuclease aI8 precursor [Contains: Truncated
non-functional cytochrome oxidase 1; Intron-encoded
endonuclease aI8 (EC 3.1.-.-)] - Ustilago maydis (Smut
fungus)
Length = 645
Score = 133 bits (322), Expect = 3e-30
Identities = 82/198 (41%), Positives = 96/198 (48%), Gaps = 2/198 (1%)
Frame = +3
Query: 27 KDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXX 200
KDIGTLY EL PG L GD Q+YN I+TAHA
Sbjct: 11 KDIGTLYLIFAVFAAMIGTAFSVLIRMELAAPGVQYLNGDHQLYNVIITAHAFVMIFFMV 70
Query: 201 XXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYP 380
N LVP+++GAPD+AFPR+NNI F VE GAGTG TVYP
Sbjct: 71 MPAMVGGFGNYLVPVMIGAPDMAFPRLNNISFWLLPPSLILLLASAFVEQGAGTGWTVYP 130
Query: 381 PLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGI 560
PLS +H G SVDLAIFSLHL+GISS + +LPLFV A+ +
Sbjct: 131 PLSGLQSHSGGSVDLAIFSLHLSGISSMLGAMNFITTVLNMRNPGMTLHKLPLFVWAIFV 190
Query: 561 TAFXXXXXXXXXAGAITI 614
TA AGAIT+
Sbjct: 191 TAILLLLSLPVLAGAITM 208
>UniRef50_Q0H8Y1 Cluster: Probable intron-encoded endonuclease aI5
precursor [Contains: Truncated non-functional cytochrome
oxidase 1; Intron-encoded endonuclease aI5 (EC
3.1.-.-)]; n=2; Ustilago maydis|Rep: Probable
intron-encoded endonuclease aI5 precursor [Contains:
Truncated non-functional cytochrome oxidase 1;
Intron-encoded endonuclease aI5 (EC 3.1.-.-)] - Ustilago
maydis (Smut fungus)
Length = 536
Score = 133 bits (322), Expect = 3e-30
Identities = 82/198 (41%), Positives = 96/198 (48%), Gaps = 2/198 (1%)
Frame = +3
Query: 27 KDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXX 200
KDIGTLY EL PG L GD Q+YN I+TAHA
Sbjct: 11 KDIGTLYLIFAVFAAMIGTAFSVLIRMELAAPGVQYLNGDHQLYNVIITAHAFVMIFFMV 70
Query: 201 XXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYP 380
N LVP+++GAPD+AFPR+NNI F VE GAGTG TVYP
Sbjct: 71 MPAMVGGFGNYLVPVMIGAPDMAFPRLNNISFWLLPPSLILLLASAFVEQGAGTGWTVYP 130
Query: 381 PLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGI 560
PLS +H G SVDLAIFSLHL+GISS + +LPLFV A+ +
Sbjct: 131 PLSGLQSHSGGSVDLAIFSLHLSGISSMLGAMNFITTVLNMRNPGMTLHKLPLFVWAIFV 190
Query: 561 TAFXXXXXXXXXAGAITI 614
TA AGAIT+
Sbjct: 191 TAILLLLSLPVLAGAITM 208
>UniRef50_P48866 Cluster: Cytochrome c oxidase subunit 1; n=179;
cellular organisms|Rep: Cytochrome c oxidase subunit 1 -
Chondrus crispus (Carragheen)
Length = 532
Score = 132 bits (318), Expect = 8e-30
Identities = 78/204 (38%), Positives = 101/204 (49%), Gaps = 2/204 (0%)
Frame = +3
Query: 9 IGTRKHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGS--LIGDDQIYNTIVTAHAXX 182
I + HKDIGTLY EL P + L+G+ QIYN ++TAHA
Sbjct: 13 IFSTNHKDIGTLYLIFGAFSGVLGGCMSMLIRMELAQPSNHLLLGNHQIYNVLITAHAFL 72
Query: 183 XXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGT 362
N LVP+++G+PD+AFPR+NNI F +VE G GT
Sbjct: 73 MIFFMVMPVMIGGFGNWLVPIMIGSPDMAFPRLNNISFWLLPPSLCLLLMSALVEVGVGT 132
Query: 363 G*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLF 542
G TVYPPLSS +H G +VDLAIFSLH++G SS S ++PLF
Sbjct: 133 GWTVYPPLSSIQSHSGGAVDLAIFSLHISGASSILGAVNFISTILNMRSPGQSMYRIPLF 192
Query: 543 V*AVGITAFXXXXXXXXXAGAITI 614
V ++ +TAF AGAIT+
Sbjct: 193 VWSILVTAFLLLLAVPVLAGAITM 216
>UniRef50_Q0H8Y0 Cluster: Probable intron-encoded endonuclease aI4
precursor [Contains: Truncated non-functional cytochrome
oxidase 1; Intron-encoded endonuclease aI4 (EC
3.1.-.-)]; n=3; Basidiomycota|Rep: Probable
intron-encoded endonuclease aI4 precursor [Contains:
Truncated non-functional cytochrome oxidase 1;
Intron-encoded endonuclease aI4 (EC 3.1.-.-)] - Ustilago
maydis (Smut fungus)
Length = 530
Score = 128 bits (308), Expect = 1e-28
Identities = 79/194 (40%), Positives = 92/194 (47%), Gaps = 2/194 (1%)
Frame = +3
Query: 27 KDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXX 200
KDIGTLY EL PG L GD Q+YN I+TAHA
Sbjct: 11 KDIGTLYLIFAVFAAMIGTAFSVLIRMELAAPGVQYLNGDHQLYNVIITAHAFVMIFFMV 70
Query: 201 XXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYP 380
N LVP+++GAPD+AFPR+NNI F VE GAGTG TVYP
Sbjct: 71 MPAMVGGFGNYLVPVMIGAPDMAFPRLNNISFWLLPPSLILLLASAFVEQGAGTGWTVYP 130
Query: 381 PLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGI 560
PLS +H G SVDLAIFSLHL+GISS + +LPLFV A+ +
Sbjct: 131 PLSGLQSHSGGSVDLAIFSLHLSGISSMLGAMNFITTVLNMRNPGMTLHKLPLFVWAIFV 190
Query: 561 TAFXXXXXXXXXAG 602
TA AG
Sbjct: 191 TAILLLLSLPVLAG 204
>UniRef50_Q5GGF4 Cluster: Cytochrome c oxidase subunit I; n=2742;
Bilateria|Rep: Cytochrome c oxidase subunit I - Cotesia
melitaearum (Parasitoid wasp)
Length = 499
Score = 127 bits (307), Expect = 2e-28
Identities = 72/169 (42%), Positives = 89/169 (52%)
Frame = +3
Query: 108 ELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINN 287
ELG PGSLIG+DQIYN+IVT+HA N L+PL+LG+PD++FPR+NN
Sbjct: 24 ELGMPGSLIGNDQIYNSIVTSHAFIMIFFMVMPVMIGGFGNWLIPLMLGSPDMSFPRMNN 83
Query: 288 IRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXX 467
+ F + G GTG TVYPPLS + H G SVDL IFSLHLAG SS
Sbjct: 84 MSFWLLIPSLLLLILSMFINVGVGTGWTVYPPLSLILGHGGMSVDLGIFSLHLAGASSIM 143
Query: 468 XXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITI 614
+ D++ LF +V ITA AGAIT+
Sbjct: 144 GAVNFITTILNMRSNLFNMDKMSLFSWSVFITAILLLLSLPVLAGAITM 192
>UniRef50_Q9ZZX1 Cluster: Intron-encoded DNA endonuclease aI5 alpha
precursor (DNA endonuclease I-SceIV) [Contains:
Truncated non-functional cytochrome oxidase 1; DNA
endonuclease aI5 alpha (EC 3.1.-.-) (Intron-encoded
endonuclease I- SceIV)]; n=2; Saccharomycetales|Rep:
Intron-encoded DNA endonuclease aI5 alpha precursor (DNA
endonuclease I-SceIV) [Contains: Truncated
non-functional cytochrome oxidase 1; DNA endonuclease
aI5 alpha (EC 3.1.-.-) (Intron-encoded endonuclease I-
SceIV)] - Saccharomyces cerevisiae (Baker's yeast)
Length = 630
Score = 117 bits (282), Expect = 2e-25
Identities = 75/198 (37%), Positives = 91/198 (45%), Gaps = 2/198 (1%)
Frame = +3
Query: 27 KDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXX 200
KDI LY EL PGS L G+ Q++N +V HA
Sbjct: 12 KDIAVLYFMLAIFSGMAGTAMSLIIRLELAAPGSQYLHGNSQLFNVLVVGHAVLMIFFLV 71
Query: 201 XXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYP 380
N L+PL++GA D AFPRINNI F +VE+GAGTG TVYP
Sbjct: 72 MPALIGGFGNYLLPLMIGATDTAFPRINNIAFWVLPMGLVCLVTSTLVESGAGTGWTVYP 131
Query: 381 PLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGI 560
PLSS AH G SVDLAIF+LHL ISS + +LPLFV ++ I
Sbjct: 132 PLSSIQAHSGPSVDLAIFALHLTSISSLLGAINFIVTTLNMRTNGMTMHKLPLFVWSIFI 191
Query: 561 TAFXXXXXXXXXAGAITI 614
TAF + IT+
Sbjct: 192 TAFLLLLSLPVLSAGITM 209
>UniRef50_P03878 Cluster: Intron-encoded DNA endonuclease aI4
precursor (DNA endonuclease I- SceII) [Contains:
Truncated non-functional cytochrome oxidase 1; DNA
endonuclease aI4 (EC 3.1.-.-) (Intron-encoded
endonuclease I-SceII)]; n=4; Saccharomycetales|Rep:
Intron-encoded DNA endonuclease aI4 precursor (DNA
endonuclease I- SceII) [Contains: Truncated
non-functional cytochrome oxidase 1; DNA endonuclease
aI4 (EC 3.1.-.-) (Intron-encoded endonuclease I-SceII)]
- Saccharomyces cerevisiae (Baker's yeast)
Length = 556
Score = 117 bits (282), Expect = 2e-25
Identities = 75/198 (37%), Positives = 91/198 (45%), Gaps = 2/198 (1%)
Frame = +3
Query: 27 KDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXX 200
KDI LY EL PGS L G+ Q++N +V HA
Sbjct: 12 KDIAVLYFMLAIFSGMAGTAMSLIIRLELAAPGSQYLHGNSQLFNVLVVGHAVLMIFFLV 71
Query: 201 XXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYP 380
N L+PL++GA D AFPRINNI F +VE+GAGTG TVYP
Sbjct: 72 MPALIGGFGNYLLPLMIGATDTAFPRINNIAFWVLPMGLVCLVTSTLVESGAGTGWTVYP 131
Query: 381 PLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGI 560
PLSS AH G SVDLAIF+LHL ISS + +LPLFV ++ I
Sbjct: 132 PLSSIQAHSGPSVDLAIFALHLTSISSLLGAINFIVTTLNMRTNGMTMHKLPLFVWSIFI 191
Query: 561 TAFXXXXXXXXXAGAITI 614
TAF + IT+
Sbjct: 192 TAFLLLLSLPVLSAGITM 209
>UniRef50_A7UG06 Cluster: Cytochrome oxidase subunits 1 and 2
polyprotein; n=1; Phaeosphaeria nodorum SN15|Rep:
Cytochrome oxidase subunits 1 and 2 polyprotein -
Phaeosphaeria nodorum SN15
Length = 789
Score = 116 bits (279), Expect = 4e-25
Identities = 74/197 (37%), Positives = 88/197 (44%), Gaps = 1/197 (0%)
Frame = +3
Query: 27 KDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPG-SLIGDDQIYNTIVTAHAXXXXXXXXX 203
KDIG LY EL PG I D+Q+YN+I+TAHA
Sbjct: 13 KDIGVLYLIYALFAGLIGTAFSVLIRLELSGPGVQYIADNQLYNSIITAHAIIMIFFMVM 72
Query: 204 XXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPP 383
N L+PL LG PD+ FPR+NNI + +ENG GTG T+YPP
Sbjct: 73 PALIGGFGNFLLPLGLGGPDMGFPRLNNISYLLLIPSIVLFLFAGGIENGVGTGWTLYPP 132
Query: 384 LSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGIT 563
LS +H G SVDLAIF LHL+GISS +L LF AV IT
Sbjct: 133 LSGIQSHSGPSVDLAIFGLHLSGISSLLGAMNFMTTTFNMRSPGIRLHKLILFAWAVVIT 192
Query: 564 AFXXXXXXXXXAGAITI 614
A AG IT+
Sbjct: 193 AVLLLLSLPVLAGGITM 209
>UniRef50_Q7YEU6 Cluster: Endonuclease; n=4; Fungi/Metazoa
group|Rep: Endonuclease - Saccharomyces servazzii
(Yeast)
Length = 675
Score = 115 bits (277), Expect = 8e-25
Identities = 73/198 (36%), Positives = 92/198 (46%), Gaps = 2/198 (1%)
Frame = +3
Query: 27 KDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXX 200
KDI +Y EL PGS L G+ Q++N +V HA
Sbjct: 12 KDISIMYFMLALFSGMAGSAMSMIIRMELAAPGSQYLHGNSQLFNVLVVGHAVLMIFFLA 71
Query: 201 XXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYP 380
N ++PL++GA D++FPRIN+I F +VE+GAGTG TVYP
Sbjct: 72 MPALIGGFGNYMLPLMIGATDMSFPRINSIGFWLLPMGLVCLVTSTLVESGAGTGWTVYP 131
Query: 381 PLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGI 560
PLSS AH G SVDLAIFSLHL ISS S ++PLFV A+ I
Sbjct: 132 PLSSIQAHSGPSVDLAIFSLHLTSISSLLGAINFIVTTLNMRTNGMSMHKMPLFVWAIFI 191
Query: 561 TAFXXXXXXXXXAGAITI 614
TAF + IT+
Sbjct: 192 TAFLLLLSLPVLSAGITM 209
>UniRef50_Q8M352 Cluster: I-SceII DNA endonuclease-like protein;
n=1; Saccharomyces castellii|Rep: I-SceII DNA
endonuclease-like protein - Saccharomyces castellii
(Yeast)
Length = 598
Score = 110 bits (265), Expect = 2e-23
Identities = 69/182 (37%), Positives = 86/182 (47%), Gaps = 2/182 (1%)
Frame = +3
Query: 27 KDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXX 200
KDI LY EL PG L G++Q++N +V HA
Sbjct: 12 KDIAVLYFLLALFSGMAGTAMSLIIRLELAAPGQQYLHGNNQLFNVLVVGHAILMIFFMV 71
Query: 201 XXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYP 380
N ++PL++GA D AFPRINNI F +VE+GAGTG TVYP
Sbjct: 72 MPALIGGFGNYMLPLMIGATDTAFPRINNIGFWLLPMGLVCLVTSTLVESGAGTGWTVYP 131
Query: 381 PLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGI 560
PL+S AH G SVDLAIF+LH+ ISS + +LPLFV A+ I
Sbjct: 132 PLASIQAHSGPSVDLAIFALHMTSISSLLGAINFIVTTLNMRTNGMTMHKLPLFVWAILI 191
Query: 561 TA 566
TA
Sbjct: 192 TA 193
>UniRef50_Q9G8S1 Cluster: Cytochrome c oxidase subunit 1; n=1;
Naegleria gruberi|Rep: Cytochrome c oxidase subunit 1 -
Naegleria gruberi
Length = 633
Score = 109 bits (262), Expect = 5e-23
Identities = 71/204 (34%), Positives = 83/204 (40%), Gaps = 2/204 (0%)
Frame = +3
Query: 9 IGTRKHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGS--LIGDDQIYNTIVTAHAXX 182
I T HK IG LY EL PG L G+ YN I T H
Sbjct: 9 IFTTNHKRIGILYLFFGVFNGFLAVLLSMLMRLELAFPGDQILFGEYHFYNMITTVHGVL 68
Query: 183 XXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGT 362
N VP+++GAPD++FPR+NN F E G GT
Sbjct: 69 MLFVVVMPILFGGFGNYFVPILIGAPDMSFPRLNNFSFWLLPGAILLAVLATYSEGGPGT 128
Query: 363 G*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLF 542
G TVYPPLSS +H G SVDL IFS HL GI S LPLF
Sbjct: 129 GWTVYPPLSSLQSHSGASVDLMIFSFHLVGIGSIVAAINFICTIFYYKNEAMFNKDLPLF 188
Query: 543 V*AVGITAFXXXXXXXXXAGAITI 614
V +V +T+F A AIT+
Sbjct: 189 VWSVAVTSFLVIVAIPVLAAAITL 212
>UniRef50_Q1XA94 Cluster: Cytochrome c oxidase subunit I; n=825;
Eukaryota|Rep: Cytochrome c oxidase subunit I -
Paracoccidioides brasiliensis
Length = 710
Score = 109 bits (261), Expect = 7e-23
Identities = 67/197 (34%), Positives = 86/197 (43%), Gaps = 1/197 (0%)
Frame = +3
Query: 27 KDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPG-SLIGDDQIYNTIVTAHAXXXXXXXXX 203
KDI LY EL PG I D+Q+YN+I+T+H
Sbjct: 39 KDIAILYLIFALFSGLLGTAFSVLIRLELSGPGIQYIEDNQLYNSIITSHGVIMIFFMVM 98
Query: 204 XXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPP 383
N L+P+++G PD+AFPR+NN+ + I+ENG GTG T+YPP
Sbjct: 99 PALIGGFGNFLLPILIGGPDMAFPRLNNVSYWLLIPSLFLFVFAAIIENGVGTGWTLYPP 158
Query: 384 LSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGIT 563
LS +H VDL IF LHL+GISS +L LF AV IT
Sbjct: 159 LSGIQSHSSMGVDLGIFGLHLSGISSLLGAINFIATLLNMRSPGIKLHKLALFGWAVVIT 218
Query: 564 AFXXXXXXXXXAGAITI 614
A A AIT+
Sbjct: 219 AVLLLLSLPVLAAAITM 235
>UniRef50_Q8SHP5 Cluster: Cytochrome c oxidase subunit I; n=15;
Fungi/Metazoa group|Rep: Cytochrome c oxidase subunit I
- Trichoderma reesei (Hypocrea jecorina)
Length = 635
Score = 108 bits (260), Expect = 9e-23
Identities = 62/150 (41%), Positives = 78/150 (52%), Gaps = 5/150 (3%)
Frame = +3
Query: 27 KDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPG-SLIGDDQIYNTIVTAHAXXXXXXXXX 203
KDIGTLY EL PG I ++Q+YN+I+TAHA
Sbjct: 41 KDIGTLYLIFALFSGLLGTAFSVLIRLELSGPGVQFIANNQLYNSIITAHAILMIFFMVM 100
Query: 204 XXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TV--- 374
N L+PL++G PD+AFPR+NNI F I+E G GTG T+
Sbjct: 101 PALIGGFGNFLMPLMIGGPDMAFPRLNNISFWLLPPSLLLLVFSAIIEGGVGTGWTLLKD 160
Query: 375 -YPPLSSNIAHRGRSVDLAIFSLHLAGISS 461
YPPLS +H G SVDLAIF+LHL+G+SS
Sbjct: 161 KYPPLSGLQSHSGPSVDLAIFALHLSGVSS 190
>UniRef50_Q9B6E6 Cluster: COX1-i5 protein; n=3; Fungi/Metazoa
group|Rep: COX1-i5 protein - Yarrowia lipolytica
(Candida lipolytica)
Length = 608
Score = 105 bits (251), Expect = 1e-21
Identities = 69/198 (34%), Positives = 87/198 (43%), Gaps = 2/198 (1%)
Frame = +3
Query: 27 KDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXX 200
KDI LY EL N GS L G+ Q +N ++TAHA
Sbjct: 17 KDIAVLYFIFALFSAMIGTGLSAIIRLELANTGSPFLHGNTQAFNVVITAHAILMIFFFV 76
Query: 201 XXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYP 380
N L+PL+LGA D+AF R+NNI F +VE GAGTG TVY
Sbjct: 77 MPALVGGFGNYLMPLMLGASDMAFARLNNISFWLLVPSLILILTSALVEAGAGTGWTVYF 136
Query: 381 PLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGI 560
PL+ +H G +VDLAIFSLHL+G SS ++ +PLF AV
Sbjct: 137 PLAGIQSHSGPAVDLAIFSLHLSGFSSLLGAINFITTFINMRTIGMKYENVPLFAWAVLF 196
Query: 561 TAFXXXXXXXXXAGAITI 614
TA A +T+
Sbjct: 197 TAILLLLSLPVLAAGLTM 214
>UniRef50_Q6ED53 Cluster: Cox1-i5 protein; n=2; Candida
stellata|Rep: Cox1-i5 protein - Candida stellata (Yeast)
Length = 763
Score = 103 bits (246), Expect = 4e-21
Identities = 57/166 (34%), Positives = 83/166 (50%)
Frame = +3
Query: 117 NPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRF 296
NP L+ + Q++N ++TAHA N LVPL +G+ D AFPRINN+ F
Sbjct: 61 NPQILMHNGQLWNVLITAHALFMVFYLVMPITMGALANYLVPLQIGSNDTAFPRINNLAF 120
Query: 297 XXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXX 476
+++ G G+G T+YPPL+S +H G S+D+AIF+LHL+G+SS
Sbjct: 121 VVLLPSMLFAVLSCLIDEGPGSGWTLYPPLTSLQSHSGSSIDMAIFALHLSGLSSIFGAI 180
Query: 477 XXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITI 614
+ +LPLFV +V ITA A +T+
Sbjct: 181 NLMVTIINMRANGMDYSKLPLFVWSVLITAVLIILALPVLAAGLTM 226
>UniRef50_Q6ED52 Cluster: Cox1-i4 protein; n=1; Candida
stellata|Rep: Cox1-i4 protein - Candida stellata (Yeast)
Length = 676
Score = 103 bits (246), Expect = 4e-21
Identities = 57/166 (34%), Positives = 83/166 (50%)
Frame = +3
Query: 117 NPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRF 296
NP L+ + Q++N ++TAHA N LVPL +G+ D AFPRINN+ F
Sbjct: 61 NPQILMHNGQLWNVLITAHALFMVFYLVMPITMGALANYLVPLQIGSNDTAFPRINNLAF 120
Query: 297 XXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXX 476
+++ G G+G T+YPPL+S +H G S+D+AIF+LHL+G+SS
Sbjct: 121 VVLLPSMLFAVLSCLIDEGPGSGWTLYPPLTSLQSHSGSSIDMAIFALHLSGLSSIFGAI 180
Query: 477 XXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITI 614
+ +LPLFV +V ITA A +T+
Sbjct: 181 NLMVTIINMRANGMDYSKLPLFVWSVLITAVLIILALPVLAAGLTM 226
>UniRef50_Q6ED51 Cluster: Cox-i3 protein; n=1; Candida stellata|Rep:
Cox-i3 protein - Candida stellata (Yeast)
Length = 588
Score = 103 bits (246), Expect = 4e-21
Identities = 57/166 (34%), Positives = 83/166 (50%)
Frame = +3
Query: 117 NPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRF 296
NP L+ + Q++N ++TAHA N LVPL +G+ D AFPRINN+ F
Sbjct: 61 NPQILMHNGQLWNVLITAHALFMVFYLVMPITMGALANYLVPLQIGSNDTAFPRINNLAF 120
Query: 297 XXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXX 476
+++ G G+G T+YPPL+S +H G S+D+AIF+LHL+G+SS
Sbjct: 121 VVLLPSMLFAVLSCLIDEGPGSGWTLYPPLTSLQSHSGSSIDMAIFALHLSGLSSIFGAI 180
Query: 477 XXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITI 614
+ +LPLFV +V ITA A +T+
Sbjct: 181 NLMVTIINMRANGMDYSKLPLFVWSVLITAVLIILALPVLAAGLTM 226
>UniRef50_Q6ED50 Cluster: Cox-i2 protein; n=1; Candida stellata|Rep:
Cox-i2 protein - Candida stellata (Yeast)
Length = 586
Score = 103 bits (246), Expect = 4e-21
Identities = 57/166 (34%), Positives = 83/166 (50%)
Frame = +3
Query: 117 NPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRF 296
NP L+ + Q++N ++TAHA N LVPL +G+ D AFPRINN+ F
Sbjct: 61 NPQILMHNGQLWNVLITAHALFMVFYLVMPITMGALANYLVPLQIGSNDTAFPRINNLAF 120
Query: 297 XXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXX 476
+++ G G+G T+YPPL+S +H G S+D+AIF+LHL+G+SS
Sbjct: 121 VVLLPSMLFAVLSCLIDEGPGSGWTLYPPLTSLQSHSGSSIDMAIFALHLSGLSSIFGAI 180
Query: 477 XXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITI 614
+ +LPLFV +V ITA A +T+
Sbjct: 181 NLMVTIINMRANGMDYSKLPLFVWSVLITAVLIILALPVLAAGLTM 226
>UniRef50_Q951H1 Cluster: Cytochrome c oxidase subunit I; n=388;
Coelomata|Rep: Cytochrome c oxidase subunit I - Picoides
borealis
Length = 513
Score = 97.1 bits (231), Expect = 3e-19
Identities = 56/127 (44%), Positives = 66/127 (51%)
Frame = +3
Query: 9 IGTRKHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXX 188
+ + HKD GTL AELG PG+L+GDDQ N IVTAHA
Sbjct: 8 LXSTNHKDXGTLXXIFGAWAGMIGTALSLLIRAELGQPGTLLGDDQXXNVIVTAHAFVMI 67
Query: 189 XXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG* 368
N LVPL++GAPD+AFPR+NN+ F VE GAGTG
Sbjct: 68 FXMXMPIMIGGFGNWLVPLMIGAPDMAFPRMNNMSFWLLPPSFLLLLASSTVEAGAGTGW 127
Query: 369 TVYPPLS 389
TVYPPL+
Sbjct: 128 TVYPPLA 134
>UniRef50_Q9MLW1 Cluster: Cytochrome c oxidase subunit I; n=5;
Naupactini|Rep: Cytochrome c oxidase subunit I -
Galapaganus collaris
Length = 406
Score = 94.7 bits (225), Expect = 2e-18
Identities = 58/124 (46%), Positives = 66/124 (53%)
Frame = +3
Query: 243 LILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVD 422
L LGAPD FPR N+ F VE GAGTG TV PPLS+NIAH G SVD
Sbjct: 4 LXLGAPDXXFPRXINMSFWFLPPXLSFFLXSSXVEKGAGTGWTVSPPLSANIAHEGSSVD 63
Query: 423 LAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAG 602
LAIFSLH+AG+ S + ++PLFV AV ITA AG
Sbjct: 64 LAIFSLHMAGVXSILGAINFISTVLNMRPSGMTPXRMPLFVWAVEITAILLLLSLPVLAG 123
Query: 603 AITI 614
AIT+
Sbjct: 124 AITM 127
>UniRef50_Q1NET5 Cluster: Cytochrome-c oxidase; n=3;
Alphaproteobacteria|Rep: Cytochrome-c oxidase -
Sphingomonas sp. SKA58
Length = 556
Score = 93.1 bits (221), Expect = 5e-18
Identities = 73/217 (33%), Positives = 92/217 (42%), Gaps = 20/217 (9%)
Frame = +3
Query: 24 HKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPG-------SLIGD------DQIY---N 155
HKDIGTLY AEL PG + D DQ Y N
Sbjct: 36 HKDIGTLYLIFAIIAGIIGGAISGLMRAELAEPGIQYLQTWARFSDGPSATLDQAYHLWN 95
Query: 156 TIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXX 335
++TAH N VP+++GAPD+AFPR+NNI F
Sbjct: 96 VLITAHGLIMVFFMVMPAMIGGFGNWFVPIMIGAPDMAFPRMNNISFWLLIPAFALLLGS 155
Query: 336 XIVE----NGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXX 503
V NGAGTG TVY PLS++ G +VD+AI SLH+AG SS
Sbjct: 156 TFVPGGTGNGAGTGWTVYAPLSTS-GSAGPAVDMAILSLHIAGASSILGAINFITTILNM 214
Query: 504 XXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITI 614
+ ++PLFV +V +TAF A AIT+
Sbjct: 215 RAPGMTLHKMPLFVWSVLVTAFLLLLALPVLAAAITM 251
>UniRef50_Q28SZ5 Cluster: Cytochrome-c oxidase; n=50; cellular
organisms|Rep: Cytochrome-c oxidase - Jannaschia sp.
(strain CCS1)
Length = 628
Score = 91.1 bits (216), Expect = 2e-17
Identities = 52/172 (30%), Positives = 80/172 (46%), Gaps = 2/172 (1%)
Frame = +3
Query: 105 AELGNPGSLIG--DDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPR 278
A LG L G D ++N ++T H N +PL++GAPD+AFPR
Sbjct: 143 ALLGTMDQLDGNPDGHLWNVLITGHGVLMMFFVVIPALFGGFGNYFMPLMIGAPDMAFPR 202
Query: 279 INNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGIS 458
+NN+ + +++ GAG G T YPP+S+ R+VD AIF++H++G S
Sbjct: 203 LNNLSYWMYVAGTCLAFCSVMIDGGAGPGWTFYPPISAQGVETSRAVDFAIFAVHVSGAS 262
Query: 459 SXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITI 614
S + ++PLF +V +TA+ AGAIT+
Sbjct: 263 SILGSINFITTFLNMRAPGMTLHKVPLFAWSVFVTAWLLLLSLPVLAGAITM 314
>UniRef50_Q59IQ0 Cluster: Cytochrome c oxidase subunit I; n=1;
Watasenia scintillans|Rep: Cytochrome c oxidase subunit
I - Watasenia scintillans (Sparkling enope)
Length = 217
Score = 88.2 bits (209), Expect = 1e-16
Identities = 51/118 (43%), Positives = 61/118 (51%)
Frame = +3
Query: 108 ELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINN 287
ELG PGSL+ DDQ+YN +VTAH N LVPL+LGAPD+AFPR+NN
Sbjct: 24 ELGQPGSLLNDDQLYNVVVTAHGFIMIFFMVMPIMIGGFGNWLVPLMLGAPDMAFPRMNN 83
Query: 288 IRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISS 461
+ F + G + PL G SVDLAIF LHLAG+SS
Sbjct: 84 MSFGFFPLHWHYYSFFTV--KGGLARDELSTPLYLVTISAGPSVDLAIFPLHLAGVSS 139
>UniRef50_Q5W914 Cluster: Cytochrome c oxidase subunit I; n=9;
Coelomata|Rep: Cytochrome c oxidase subunit I - Lingula
unguis
Length = 573
Score = 82.6 bits (195), Expect = 7e-15
Identities = 45/146 (30%), Positives = 67/146 (45%)
Frame = +3
Query: 24 HKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXX 203
HKDIGT+Y EL +PG + +Y++I+T HA
Sbjct: 14 HKDIGTIYLYMGLWSGVFGLSLSHCMRIELSHPGEWLQVGYMYHSIMTMHAFMMIFFFVM 73
Query: 204 XXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPP 383
N +PL++ D++ PR+NN+ + G G G T+YPP
Sbjct: 74 PTSIGGLGNWFIPLMIKIKDLSMPRLNNLSVWLALGSLFLMCMAFLSSGGLGCGWTMYPP 133
Query: 384 LSSNIAHRGRSVDLAIFSLHLAGISS 461
LS++ G +DLA+FSLH+AG+SS
Sbjct: 134 LSNSEFMDGLPIDLAVFSLHMAGMSS 159
>UniRef50_O47573 Cluster: Cytochrome c oxidase subunit I; n=42;
Nematoda|Rep: Cytochrome c oxidase subunit I -
Onchocerca volvulus
Length = 548
Score = 81.8 bits (193), Expect = 1e-14
Identities = 55/202 (27%), Positives = 77/202 (38%), Gaps = 2/202 (0%)
Frame = +3
Query: 9 IGTRKHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGS--LIGDDQIYNTIVTAHAXX 182
I T HK IGT Y EL +PG G Q+YN+++T H
Sbjct: 16 INTVNHKTIGTYYIVLGYWAGLGGSVLSMLIRFELSSPGGHLFFGSGQVYNSVLTMHGVL 75
Query: 183 XXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGT 362
N ++PL+LGAP++AFPR+N + F + G G+
Sbjct: 76 MIFFLVMPILIGGFGNWMLPLMLGAPEMAFPRVNALSFWFTFVALLMVYQSFFIGGGPGS 135
Query: 363 G*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLF 542
T YPPLS S+D I LH GI S + DQ+ +F
Sbjct: 136 SWTFYPPLSVE-GQPELSLDTMILGLHTVGIGSLLGAINFMVTTQNMRSTAVTLDQISMF 194
Query: 543 V*AVGITAFXXXXXXXXXAGAI 608
V +T+F AG++
Sbjct: 195 VWTSYLTSFLLVLSVPVLAGSL 216
>UniRef50_P14544 Cluster: Cytochrome c oxidase subunit 1; n=7;
Eukaryota|Rep: Cytochrome c oxidase subunit 1 -
Leishmania tarentolae (Sauroleishmania tarentolae)
Length = 549
Score = 80.6 bits (190), Expect = 3e-14
Identities = 48/164 (29%), Positives = 66/164 (40%)
Frame = +3
Query: 123 GSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXX 302
G L GD Q YN ++T+H N +P++ G PD+ FPR+NN+ F
Sbjct: 48 GILFGDYQFYNVLITSHGLIMVFAFIMPVMMGGLVNYFIPVMAGFPDMVFPRLNNMSFWM 107
Query: 303 XXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXX 482
+ E G G G T+YP L H + D +F++HL GISS
Sbjct: 108 YLAGFGCVVNGFLTEEGMGVGWTLYPTLICIDFHSSLACDFVMFAVHLLGISSILNSINL 167
Query: 483 XXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITI 614
SF LF+ A ITA AG +T+
Sbjct: 168 LGTLFCCRRKFFSFLSWSLFIWAALITAILLIITLPVLAGGVTL 211
>UniRef50_Q3L2S5 Cluster: Cytochrome c oxidase subunit I; n=1; Aedes
cretinus|Rep: Cytochrome c oxidase subunit I - Aedes
cretinus
Length = 153
Score = 80.2 bits (189), Expect = 4e-14
Identities = 39/65 (60%), Positives = 45/65 (69%)
Frame = +3
Query: 243 LILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVD 422
L+LGAPD+AFPR+NN+ F +VENGAGTG TVYPPLSS AH G SVD
Sbjct: 1 LMLGAPDMAFPRMNNMSFWMLPPSLTLLLSSSMVENGAGTGWTVYPPLSSGTAHAGASVD 60
Query: 423 LAIFS 437
LAI+S
Sbjct: 61 LAIYS 65
>UniRef50_Q0H8X8 Cluster: Probable intron-encoded endonuclease aI2
precursor [Contains: Truncated non-functional cytochrome
oxidase 1; Intron-encoded endonuclease aI2 (EC
3.1.-.-)]; n=2; Ustilago maydis|Rep: Probable
intron-encoded endonuclease aI2 precursor [Contains:
Truncated non-functional cytochrome oxidase 1;
Intron-encoded endonuclease aI2 (EC 3.1.-.-)] - Ustilago
maydis (Smut fungus)
Length = 533
Score = 78.6 bits (185), Expect = 1e-13
Identities = 50/126 (39%), Positives = 57/126 (45%), Gaps = 2/126 (1%)
Frame = +3
Query: 27 KDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXX 200
KDIGTLY EL PG L GD Q+YN I+TAHA
Sbjct: 11 KDIGTLYLIFAVFAAMIGTAFSVLIRMELAAPGVQYLNGDHQLYNVIITAHAFVMIFFMV 70
Query: 201 XXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYP 380
N LVP+++GAPD+AFPR+NNI F VE GAGTG TV
Sbjct: 71 MPAMVGGFGNYLVPVMIGAPDMAFPRLNNISFWLLPPSLILLLASAFVEQGAGTGWTVKC 130
Query: 381 PLSSNI 398
LS I
Sbjct: 131 KLSQII 136
>UniRef50_Q35061 Cluster: CoxI intron4 ORF; n=3; Marchantia
polymorpha|Rep: CoxI intron4 ORF - Marchantia polymorpha
(Liverwort)
Length = 434
Score = 74.5 bits (175), Expect = 2e-12
Identities = 42/119 (35%), Positives = 55/119 (46%), Gaps = 2/119 (1%)
Frame = +3
Query: 24 HKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLI--GDDQIYNTIVTAHAXXXXXXX 197
HKDIGTLY EL PG+ I G+ Q+YN ++TAHA
Sbjct: 14 HKDIGTLYLIFGAIAGVMGTCFSVLIRMELAQPGNQILGGNHQLYNVLITAHAFLMIFFM 73
Query: 198 XXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TV 374
N VP+++G+PD+AFPR+NNI F +VE G G+G TV
Sbjct: 74 VMPAMIGGFGNWFVPILIGSPDMAFPRLNNISFWLLPPSLLLLLSSALVEVGCGSGWTV 132
>UniRef50_Q8HCX2 Cluster: Cytochrome c oxidase subunit I; n=1;
Aplidium nordmanni|Rep: Cytochrome c oxidase subunit I -
Aplidium nordmanni
Length = 227
Score = 73.7 bits (173), Expect = 3e-12
Identities = 63/147 (42%), Positives = 72/147 (48%), Gaps = 1/147 (0%)
Frame = +3
Query: 24 HKDIGTL-YXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXX 200
HKD GTL + L G +IG QI VTA A
Sbjct: 1 HKDXGTLXFXFXXWSAXFXGXXFXLXXRXXLSXXGQVIGXGQIXXVGVTAXALVMIFFFV 60
Query: 201 XXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYP 380
L PL +GAP +A PR+ N+ F + G G VYP
Sbjct: 61 MPTLXGGFGXXLXPLXVGAPXMAXPRLXNMSFWLLPPSLXXLCLSVFIGXGVGXXWXVYP 120
Query: 381 PLSSNIAHRGRSVDLAIFSLHLAGISS 461
P SS +AH +VDL IF LHLAGISS
Sbjct: 121 PXSSGLAHSSGAVDLGIFXLHLAGISS 147
>UniRef50_Q9B6E4 Cluster: COX1-i3 protein; n=2; Yarrowia
lipolytica|Rep: COX1-i3 protein - Yarrowia lipolytica
(Candida lipolytica)
Length = 457
Score = 65.3 bits (152), Expect = 1e-09
Identities = 44/126 (34%), Positives = 54/126 (42%), Gaps = 2/126 (1%)
Frame = +3
Query: 27 KDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXX 200
KDI LY EL N GS L G+ Q +N ++TAHA
Sbjct: 17 KDIAVLYFIFALFSAMIGTGLSAIIRLELANTGSPFLHGNTQAFNVVITAHAILMIFFFV 76
Query: 201 XXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYP 380
N L+PL+LGA D+AF R+NNI F +VE GAGTG TV
Sbjct: 77 MPALVGGFGNYLMPLMLGASDMAFARLNNISFWLLVPSLILILTSALVEAGAGTGWTVKK 136
Query: 381 PLSSNI 398
SS +
Sbjct: 137 ICSSKM 142
>UniRef50_Q18JR5 Cluster: Cytochrome-c-like terminal oxidase,
subunit I; n=2; Halobacteriaceae|Rep: Cytochrome-c-like
terminal oxidase, subunit I - Haloquadratum walsbyi
(strain DSM 16790)
Length = 634
Score = 64.5 bits (150), Expect = 2e-09
Identities = 52/157 (33%), Positives = 69/157 (43%), Gaps = 8/157 (5%)
Frame = +3
Query: 15 TRKHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXX 194
T HKDIG LY EL +PG + + YN+++T+H
Sbjct: 91 TVDHKDIGLLYGAFGLTAFAVGGLMVVLMRIELADPGMTVISNTFYNSLLTSHGITMLFL 150
Query: 195 XXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRF--XXXXXXXXXXXXXXIVE-NGAGTG 365
N L+PL++GA D+AFPRIN I F I E A TG
Sbjct: 151 FATPIIAAFS-NYLIPLLIGADDMAFPRINAIAFWLLPPAALLIWAGFFPIPEVIPAQTG 209
Query: 366 *TVYPPLS-----SNIAHRGRSVDLAIFSLHLAGISS 461
T+Y PLS N A+ G VDL + LHL+G+S+
Sbjct: 210 WTMYTPLSVGEGMGNQANAG--VDLMLLGLHLSGVSA 244
>UniRef50_A6XEV4 Cluster: Cytochrome c oxidase subunit 1; n=1;
Munidopsis verrucosus|Rep: Cytochrome c oxidase subunit
1 - Munidopsis verrucosus
Length = 154
Score = 61.3 bits (142), Expect = 2e-08
Identities = 34/78 (43%), Positives = 43/78 (55%)
Frame = +3
Query: 381 PLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGI 560
PL+S+IAH G SVD+AIFSLHLAG+SS + D++PLF+ AV I
Sbjct: 72 PLASSIAHAGASVDMAIFSLHLAGVSSILGSVNFMTTVINMRAKGMTLDRVPLFIWAVFI 131
Query: 561 TAFXXXXXXXXXAGAITI 614
T AGAIT+
Sbjct: 132 TTVLLLLSLPVLAGAITM 149
Score = 35.1 bits (77), Expect = 1.3
Identities = 18/42 (42%), Positives = 19/42 (45%)
Frame = +2
Query: 215 WRIWKLXXXXXXXXXXXXXPTNK*YKILTPTPLPYIINFKKN 340
W IWKL P NK YKILT PL Y K+N
Sbjct: 28 WWIWKLINSANVSGPWYGFPANKQYKILTSAPLTYTPINKRN 69
>UniRef50_Q02766 Cluster: Cytochrome c oxidase subunit 1; n=107;
Alveolata|Rep: Cytochrome c oxidase subunit 1 -
Plasmodium falciparum
Length = 476
Score = 61.3 bits (142), Expect = 2e-08
Identities = 33/106 (31%), Positives = 52/106 (49%), Gaps = 1/106 (0%)
Frame = +3
Query: 147 IYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXX 326
+YN I T H N +P++ G+P++A+PRIN+I
Sbjct: 58 LYNMIFTIHGIIMIFFNIMPGLFGGFGNYFLPILCGSPELAYPRINSISLLLQPIAFVLV 117
Query: 327 XXXXIVENGAGTG*TVYPPLSSNIAHRGR-SVDLAIFSLHLAGISS 461
E G GTG T+YPPLS+++ +VD+ IF L ++G++S
Sbjct: 118 ILSTAAEFGGGTGWTLYPPLSTSLMSLSPVAVDVIIFGLLVSGVAS 163
>UniRef50_Q36097 Cluster: Cytochrome c oxidase subunit 1; n=3;
Theileria|Rep: Cytochrome c oxidase subunit 1 -
Theileria parva
Length = 481
Score = 59.7 bits (138), Expect = 5e-08
Identities = 34/106 (32%), Positives = 51/106 (48%)
Frame = +3
Query: 144 QIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXX 323
+IYN + T H N L P++LG D+ +PR+N
Sbjct: 60 EIYNLLFTLHGLIMVFFNIMTGLFGGIGNYLYPVLLGYCDVVYPRVNLYSLLFQPIGFVL 119
Query: 324 XXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISS 461
+E G+GTG T+YPPLS+++++ G +D IF L AGI+S
Sbjct: 120 VVSSIYLEIGSGTGWTLYPPLSTSLSNVG--IDFIIFGLLAAGIAS 163
>UniRef50_A1XI88 Cluster: Cytochrome c oxidase subunit I; n=1;
Myrmarachne sp. G FSC-2006|Rep: Cytochrome c oxidase
subunit I - Myrmarachne sp. G FSC-2006
Length = 129
Score = 59.3 bits (137), Expect = 7e-08
Identities = 28/41 (68%), Positives = 31/41 (75%)
Frame = +3
Query: 339 IVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISS 461
+VE G G G TVYPPL+S + H G SVD AIFSLHLAG SS
Sbjct: 12 MVEMGVGAGWTVYPPLASVVGHGGSSVDFAIFSLHLAGASS 52
>UniRef50_Q5K464 Cluster: Putative DNA endonuclease; n=1;
Kluyveromyces thermotolerans|Rep: Putative DNA
endonuclease - Kluyveromyces thermotolerans (Yeast)
Length = 542
Score = 59.3 bits (137), Expect = 7e-08
Identities = 38/118 (32%), Positives = 51/118 (43%), Gaps = 2/118 (1%)
Frame = +3
Query: 27 KDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXX 200
KDI LY EL PG+ L G+ Q++N +V HA
Sbjct: 12 KDIAILYFIFAIFCGMAGTAMSVIIRLELAAPGNQYLGGNHQLFNVLVVGHAVLMIFFLV 71
Query: 201 XXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TV 374
N L+PL++GA D++F R+NNI F +VE+GAGTG TV
Sbjct: 72 MPALIGGFGNYLLPLMIGASDMSFARLNNISFWLLPPALVCLVTSTLVESGAGTGWTV 129
>UniRef50_A7H8L4 Cluster: Cytochrome c oxidase subunit I type; n=38;
Bacteria|Rep: Cytochrome c oxidase subunit I type -
Anaeromyxobacter sp. Fw109-5
Length = 555
Score = 58.8 bits (136), Expect = 9e-08
Identities = 48/184 (26%), Positives = 69/184 (37%)
Frame = +3
Query: 15 TRKHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXX 194
T+ HK IG ++ EL PG I D YN + T H
Sbjct: 32 TQDHKRIGVMFLVATTISFALGGFFALLIRLELLTPGPTIMDAMTYNRMFTLHGVVMIFL 91
Query: 195 XXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TV 374
N L+P+++GA D+AFP++N + F +V+ GA TG T
Sbjct: 92 FMIPAIPSGFGNFLLPIMIGAKDVAFPKLNLLSF-YVYLAGAVVALFGMVQGGADTGWTF 150
Query: 375 YPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AV 554
Y P S+ + V L F L G SS + +LPLFV ++
Sbjct: 151 YTPYSTTTITKVVPVLLGAFIL---GFSSILTGLNFIVTTHTMRAPGMGWTRLPLFVWSI 207
Query: 555 GITA 566
T+
Sbjct: 208 YATS 211
>UniRef50_P34956 Cluster: Quinol oxidase subunit 1 (EC 1.10.3.-)
(Quinol oxidase polypeptide I) (Quinol oxidase aa3-600,
subunit qoxB) (Oxidase aa(3)-600 subunit 1); n=45;
Bacillales|Rep: Quinol oxidase subunit 1 (EC 1.10.3.-)
(Quinol oxidase polypeptide I) (Quinol oxidase aa3-600,
subunit qoxB) (Oxidase aa(3)-600 subunit 1) - Bacillus
subtilis
Length = 649
Score = 57.2 bits (132), Expect = 3e-07
Identities = 40/151 (26%), Positives = 56/151 (37%)
Frame = +3
Query: 9 IGTRKHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXX 188
I T HK +G +Y A+L P + D YN I T H
Sbjct: 48 ITTVDHKKLGIMYIISAVIMLFRGGVDGLMMRAQLALPNNSFLDSNHYNEIFTTHGTIMI 107
Query: 189 XXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG* 368
N +VPL +GA D+AFP +NN+ F ++ G
Sbjct: 108 IFMAMPFLIGLI-NVVVPLQIGARDVAFPYLNNLSFWTFFVGAMLFNISFVIGGSPNAGW 166
Query: 369 TVYPPLSSNIAHRGRSVDLAIFSLHLAGISS 461
T Y PL+SN G + + L +AGI +
Sbjct: 167 TSYMPLASNDMSPGPGENYYLLGLQIAGIGT 197
>UniRef50_Q1CZF1 Cluster: Cytochrome c oxidase, subunit I; n=1;
Myxococcus xanthus DK 1622|Rep: Cytochrome c oxidase,
subunit I - Myxococcus xanthus (strain DK 1622)
Length = 556
Score = 56.8 bits (131), Expect = 4e-07
Identities = 47/184 (25%), Positives = 66/184 (35%)
Frame = +3
Query: 15 TRKHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXX 194
T HK IG ++ EL PG I D YN T H
Sbjct: 39 TVDHKRIGLMFLFWVLLFFLVGGIFALLIRVELLTPGPTIMDAMTYNRTFTLHGLVMIFL 98
Query: 195 XXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TV 374
N ++PL+LGA D+AFPR+N + ++ G TG T
Sbjct: 99 FMIPAIPAVFGNFMLPLMLGAKDVAFPRLNLLSL-YIYLAGAVLALWGMLNGGLDTGWTF 157
Query: 375 YPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AV 554
Y P S AH +V +F + G SS ++ ++PLFV A+
Sbjct: 158 YTPYS---AHTTTTVAPVLFGAFIIGFSSIVTGINFIVTCHTMRAPGITWFKMPLFVWAI 214
Query: 555 GITA 566
T+
Sbjct: 215 YATS 218
>UniRef50_Q34463 Cluster: Cytochrome oxidase subunit I; n=3; Euglena
gracilis|Rep: Cytochrome oxidase subunit I - Euglena
gracilis
Length = 495
Score = 56.0 bits (129), Expect = 7e-07
Identities = 41/155 (26%), Positives = 62/155 (40%), Gaps = 6/155 (3%)
Frame = +3
Query: 15 TRKHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLI----GDDQIYNTIVTAHAXX 182
T HK IG LY EL G I + IYN +T H
Sbjct: 15 TTSHKIIGILYGYMGYIAGILGYIISMLIRMELNTQGLAIVRKVKEVTIYNNWITIHGLI 74
Query: 183 XXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXI-VENGAG 359
N L+P+++G +++ PR+N I F + +
Sbjct: 75 MLFVFIMPVGIGFYGNYLIPMLIGTSELSMPRMNGISFWMLIVGVVIFVISNVLMSKPIS 134
Query: 360 TG*TVYPPLSSNIAHR-GRSVDLAIFSLHLAGISS 461
+G T+YPPLS+ A G ++DL++ +H+ GISS
Sbjct: 135 SGWTLYPPLSTRDADNIGVNIDLSLLVVHVLGISS 169
>UniRef50_P33518 Cluster: Cytochrome c oxidase polypeptide 1; n=4;
Halobacteriaceae|Rep: Cytochrome c oxidase polypeptide 1
- Halobacterium salinarium (Halobacterium halobium)
Length = 593
Score = 56.0 bits (129), Expect = 7e-07
Identities = 41/151 (27%), Positives = 60/151 (39%), Gaps = 2/151 (1%)
Frame = +3
Query: 15 TRKHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXX 194
T HKDIG LY EL + +YN ++T+H
Sbjct: 65 TVDHKDIGILYGVYGTIAFAWGGVSVLLMRTELATSSETLISPSLYNGLLTSHGITMLFL 124
Query: 195 XXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVEN--GAGTG* 368
N +PL++ A D+AFPRIN I F ++ A T
Sbjct: 125 FGTPMIAAFG-NYFIPLLIDADDMAFPRINAIAFWLLPPGAILIWSGFLIPGIATAQTSW 183
Query: 369 TVYPPLSSNIAHRGRSVDLAIFSLHLAGISS 461
T+Y PLS ++ +VD+ + LHL G+S+
Sbjct: 184 TMYTPLSLQMS--SPAVDMMMLGLHLTGVSA 212
>UniRef50_Q9YDX6 Cluster: Heme-copper oxidase subunit I+III; n=1;
Aeropyrum pernix|Rep: Heme-copper oxidase subunit I+III
- Aeropyrum pernix
Length = 815
Score = 56.0 bits (129), Expect = 7e-07
Identities = 43/151 (28%), Positives = 58/151 (38%), Gaps = 1/151 (0%)
Frame = +3
Query: 9 IGTRKHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXX 188
I T HKDIG LY +L P S Y VT H
Sbjct: 16 ITTTDHKDIGLLYLVTSIAFLLIAGSLALLFRVQLAIPKSNFLTGDAYYEAVTVHGLIML 75
Query: 189 XXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGA-GTG 365
N +VPL +GA D+AFPR+N + + E+GA G
Sbjct: 76 LWFASPFAFGLA-NYIVPLQIGARDLAFPRLNALSYWLYLLSGLVLLASFFTESGAPNVG 134
Query: 366 *TVYPPLSSNIAHRGRSVDLAIFSLHLAGIS 458
T+Y PL++ I G +DLA ++ L +S
Sbjct: 135 WTLYAPLTARIYTPGIGLDLAALAIFLFSLS 165
>UniRef50_A7HEB5 Cluster: Cytochrome-c oxidase; n=2;
Cystobacterineae|Rep: Cytochrome-c oxidase -
Anaeromyxobacter sp. Fw109-5
Length = 596
Score = 55.6 bits (128), Expect = 9e-07
Identities = 37/140 (26%), Positives = 55/140 (39%), Gaps = 1/140 (0%)
Frame = +3
Query: 150 YNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXX 329
Y I T H N L+PL++GA D+AFPR+N F
Sbjct: 86 YQQIFTTHGLVMIFFAVTPVLIGTFGNLLIPLMIGARDMAFPRLNMYSFWTFLLSQLLVL 145
Query: 330 XXXIVENG-AGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXX 506
G AG G T Y PLS+N+ G L + ++ + G+SS
Sbjct: 146 ASFFAPLGSAGAGWTTYTPLSTNVGMPGMGQTLVVAAIFVTGVSSTMGAVNYITTVIRLR 205
Query: 507 XXXXSFDQLPLFV*AVGITA 566
++ +LPL + + +TA
Sbjct: 206 APGMTYMRLPLTIWGLWLTA 225
>UniRef50_Q9XKD7 Cluster: Cytochrome c oxidase subunit I; n=1;
Dicyema misakiense|Rep: Cytochrome c oxidase subunit I -
Dicyema misakiense
Length = 473
Score = 55.6 bits (128), Expect = 9e-07
Identities = 43/146 (29%), Positives = 57/146 (39%)
Frame = +3
Query: 24 HKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXX 203
H D+ LY +L P L D +YN VT H
Sbjct: 9 HIDVSLLYFSLGIFSALLGMSFSLLFRLQLAFPSILTSD--VYNAFVTLHGLVMVFFAAM 66
Query: 204 XXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPP 383
N L+P PD+ FPR+N + F ++ + A G T YPP
Sbjct: 67 PTAIGFFANLLIPYHCNLPDLLFPRMNALSFWLMPFSLSL-----LLFSMASAGWTFYPP 121
Query: 384 LSSNIAHRGRSVDLAIFSLHLAGISS 461
LSS SV+ ++FSLHLAGI+S
Sbjct: 122 LSS----LSPSVEFSVFSLHLAGIAS 143
>UniRef50_Q79VD7 Cluster: Cytochrome c oxidase subunit 1; n=93;
Actinobacteria (class)|Rep: Cytochrome c oxidase subunit
1 - Corynebacterium glutamicum (Brevibacterium flavum)
Length = 584
Score = 55.2 bits (127), Expect = 1e-06
Identities = 41/150 (27%), Positives = 56/150 (37%), Gaps = 1/150 (0%)
Frame = +3
Query: 15 TRKHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXX 194
T HK +G +Y AEL PG ++ +N + T H
Sbjct: 35 TTDHKQLGIMYIIMSFSFFFLGGLMALLIRAELFTPGLQFLSNEQFNQLFTMHGTVMLLL 94
Query: 195 XXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGT-G*T 371
N ++PL +GAPD+AFPR+N F + GA G T
Sbjct: 95 YGTPIVWGFA-NYVLPLQIGAPDVAFPRLNAFGFWITTVGGVAMLTGFLTPGGAADFGWT 153
Query: 372 VYPPLSSNIAHRGRSVDLAIFSLHLAGISS 461
+Y PLS I G D+ I + GI S
Sbjct: 154 MYSPLSDAIHSPGLGSDMWIVGVGATGIGS 183
>UniRef50_O67935 Cluster: Cytochrome c oxidase subunit I; n=1;
Aquifex aeolicus|Rep: Cytochrome c oxidase subunit I -
Aquifex aeolicus
Length = 485
Score = 53.2 bits (122), Expect = 5e-06
Identities = 35/114 (30%), Positives = 49/114 (42%)
Frame = +3
Query: 120 PGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFX 299
PG + D + YN ++T H N L+PL++GA D+AFPR+N + +
Sbjct: 2 PGMQVVDFKTYNYLLTGHGVGMLFWWAIAAHIGGFGNFLLPLMIGAKDVAFPRLNALSWW 61
Query: 300 XXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISS 461
I N T T YPP S N + L +F +HL G SS
Sbjct: 62 AFFAANVLFLMTLIPGNHIMTMWTGYPPFSLN--NDAGVTALYVFVMHLLGASS 113
>UniRef50_A6C5X9 Cluster: Cytochrome caa3 oxidase; n=3;
Bacteria|Rep: Cytochrome caa3 oxidase - Planctomyces
maris DSM 8797
Length = 754
Score = 53.2 bits (122), Expect = 5e-06
Identities = 42/179 (23%), Positives = 61/179 (34%)
Frame = +3
Query: 9 IGTRKHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXX 188
+ T HK IG +Y +L P + +++N + T H
Sbjct: 27 VSTLDHKRIGIMYILTAVFYLAVGGFEALLMRIQLAFPNNTFLSPEMFNQLFTMHGTTMV 86
Query: 189 XXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG* 368
N VPL++GA D+AFPR+N+ F + + G
Sbjct: 87 FLVGMPVLTGFA-NYFVPLMIGARDVAFPRLNSFGFWMFFFGAALLHFSFLTGSAPNAGW 145
Query: 369 TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV 545
Y PLSS + VD I L + GI S S ++PLFV
Sbjct: 146 FSYVPLSSKAYSSLQGVDYWIIGLLIMGIGSVSGAINIFATIINLRAPGMSLQRVPLFV 204
>UniRef50_Q9B8X8 Cluster: Cytochrome c oxidase subunit I; n=517;
Bilateria|Rep: Cytochrome c oxidase subunit I -
Schistosoma mansoni (Blood fluke)
Length = 609
Score = 52.4 bits (120), Expect = 8e-06
Identities = 41/146 (28%), Positives = 54/146 (36%)
Frame = +3
Query: 24 HKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXX 203
HK IG LY L +P + +YN +VT H
Sbjct: 110 HKRIGLLYFVFGLWGGFIGLGLSLLIRLNLCDPYYNLVSVDVYNYLVTNHGVAMIFFFLM 169
Query: 204 XXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPP 383
N +P+ L D+ PR+N++ G G G T+YPP
Sbjct: 170 PILIGGFGNYFLPIFLCLDDLLLPRLNSLSLWLMVPSIFYMELSLYY--GCGIGWTLYPP 227
Query: 384 LSSNIAHRGRSVDLAIFSLHLAGISS 461
LS G VD +FSLHLAG+SS
Sbjct: 228 LSI-WEGSGFGVDYLMFSLHLAGVSS 252
>UniRef50_A5UVJ0 Cluster: Cytochrome-c oxidase; n=2;
Roseiflexus|Rep: Cytochrome-c oxidase - Roseiflexus sp.
RS-1
Length = 641
Score = 51.6 bits (118), Expect = 1e-05
Identities = 42/187 (22%), Positives = 63/187 (33%)
Frame = +3
Query: 9 IGTRKHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXX 188
+ T HK IG +Y +LG P + +YN + T H
Sbjct: 26 LSTTDHKRIGIMYLVSAFVFFLIGGIEALLMRIQLGVPDNTFLTPDVYNQMFTMHGTTMI 85
Query: 189 XXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG* 368
N +VPL++GA D+AFPR+N + V G
Sbjct: 86 FLGLMPLNVGLG-NYMVPLMIGARDMAFPRLNALSIWLFIFGGLMLYVSFFVGGAPNVGW 144
Query: 369 TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV* 548
Y PL+ VD I + L G++S + +++PLFV
Sbjct: 145 FAYAPLTQKQFAPTAGVDYWIVGIGLTGVASIAGALNFIVTILNMRAPGMTLNRMPLFVW 204
Query: 549 AVGITAF 569
+ AF
Sbjct: 205 MQLVVAF 211
>UniRef50_A3ZTG1 Cluster: Cytochrome c oxidase subunit I; n=1;
Blastopirellula marina DSM 3645|Rep: Cytochrome c
oxidase subunit I - Blastopirellula marina DSM 3645
Length = 595
Score = 48.8 bits (111), Expect = 1e-04
Identities = 37/145 (25%), Positives = 58/145 (40%), Gaps = 4/145 (2%)
Frame = +3
Query: 144 QIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXX 323
+ Y +VT HA N L+PL++GA D+AFP +N + +
Sbjct: 86 EFYTVLVTMHATVMIFLVIIPILAGAFGNFLIPLMIGADDMAFPTLNMLSYWFMWPAFFF 145
Query: 324 XXXXXIVE-NGAGTG*TVYPPLS---SNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXX 491
+ +GA G T YPPLS ++ G + L + + G+SS
Sbjct: 146 FGGAFFCDGHGAAAGWTSYPPLSDMTTSAPSSGAAQTLWLLGVTTVGVSSMLGSVNYMTT 205
Query: 492 XXXXXXXXXSFDQLPLFV*AVGITA 566
+ +LPL + A+ ITA
Sbjct: 206 IIQMRAPGMTMFRLPLTIWAMFITA 230
>UniRef50_Q98P35 Cluster: Cytochrome C oxidase subunit I; n=16;
cellular organisms|Rep: Cytochrome C oxidase subunit I -
Rhizobium loti (Mesorhizobium loti)
Length = 623
Score = 48.0 bits (109), Expect = 2e-04
Identities = 45/188 (23%), Positives = 65/188 (34%), Gaps = 1/188 (0%)
Frame = +3
Query: 9 IGTRKHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGS-LIGDDQIYNTIVTAHAXXX 185
+ T HK IG Y +L P + IG D+ YN I T H
Sbjct: 24 LSTVDHKIIGRRYTVTAFVFLALGGVLALLMRLQLAQPEARFIGPDR-YNQIFTMHGSNM 82
Query: 186 XXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG 365
LVPL++G IAFPR+N + V+ G G
Sbjct: 83 MFLFAVPVMQAMAIY-LVPLMVGTRHIAFPRLNAFSYWMYLAGGLLLWIAFAVDTGPDIG 141
Query: 366 *TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV 545
Y PLS G+ D+ + +S+ S D++PLFV
Sbjct: 142 WFAYVPLSGPQYAAGKRADIWAQMITFTEVSALAIAVEIVVTVFKQRAPGMSLDRIPLFV 201
Query: 546 *AVGITAF 569
++ +T+F
Sbjct: 202 WSMLVTSF 209
>UniRef50_Q0I8U1 Cluster: Cytochrome c oxidase subunit I; n=16;
Bacteria|Rep: Cytochrome c oxidase subunit I -
Synechococcus sp. (strain CC9311)
Length = 564
Score = 48.0 bits (109), Expect = 2e-04
Identities = 39/149 (26%), Positives = 59/149 (39%), Gaps = 3/149 (2%)
Frame = +3
Query: 108 ELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINN 287
EL P + + D +YN + T H N L+P ++GAPD+AFP++N
Sbjct: 64 ELITPPADLVDPSVYNGLYTMHGTVMLFLFLFPILNGFN-NLLIPTMIGAPDMAFPKLNA 122
Query: 288 IRFXXXXXXXXXXXXXXIVENG-AGTG*TVYPPLS--SNIAHRGRSVDLAIFSLHLAGIS 458
F G A +G YPP+S + + H L I ++ L+GIS
Sbjct: 123 AAFWLVPVFSIVLMGSFFAPGGPASSGWWSYPPMSLQNPLGHFINGEFLWILAVALSGIS 182
Query: 459 SXXXXXXXXXXXXXXXXXXXSFDQLPLFV 545
S F ++P+FV
Sbjct: 183 SIMGAINFVTTIIRMRAPGMGFFRMPVFV 211
>UniRef50_Q8ZXD1 Cluster: Cytochrome C oxidase subunit I /III; n=4;
cellular organisms|Rep: Cytochrome C oxidase subunit I
/III - Pyrobaculum aerophilum
Length = 800
Score = 47.2 bits (107), Expect = 3e-04
Identities = 28/79 (35%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Frame = +3
Query: 228 N*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIV-ENGAGTG*TVYPPLSSNIAH 404
N LVP ++GAPD+ +PRIN + F + ++G G T+YPPLS+
Sbjct: 86 NILVPKLIGAPDMYWPRINALSFWMQVPATVFMWSSLLFWQHGDSIGWTLYPPLST--IS 143
Query: 405 RGRSVDLAIFSLHLAGISS 461
+ VDL + + +AG SS
Sbjct: 144 KSIGVDLILLGIIIAGFSS 162
>UniRef50_Q06473 Cluster: Cytochrome c oxidase subunit 1 (EC
1.9.3.1) (Cytochrome c oxidase polypeptide I)
(Cytochrome aa3 subunit 1) (Oxidase aa(3) subunit 1);
n=59; Cyanobacteria|Rep: Cytochrome c oxidase subunit 1
(EC 1.9.3.1) (Cytochrome c oxidase polypeptide I)
(Cytochrome aa3 subunit 1) (Oxidase aa(3) subunit 1) -
Synechocystis sp. (strain PCC 6803)
Length = 551
Score = 46.8 bits (106), Expect = 4e-04
Identities = 41/146 (28%), Positives = 52/146 (35%)
Frame = +3
Query: 24 HKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXX 203
HK IG Y EL P ++YN ++T H
Sbjct: 27 HKVIGIQYLVTSFLFFFIGGSFAEAMRTELATPSPDFVQPEMYNQLMTLHGTIMIFLWIV 86
Query: 204 XXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPP 383
N L+PL++G D+AFPR+N + F V G T YPP
Sbjct: 87 PAGAAFA-NYLIPLMVGTEDMAFPRLNAVAFWLTPPGGILLISSFFV-GAPQAGWTSYPP 144
Query: 384 LSSNIAHRGRSVDLAIFSLHLAGISS 461
LS G +L I SL L G SS
Sbjct: 145 LSLLSGKWGE--ELWILSLLLVGTSS 168
>UniRef50_P98005 Cluster: Cytochrome c oxidase polypeptide I+III (EC
1.9.3.1) (Cytochrome c aa(3) subunit 1); n=2; Thermus
thermophilus|Rep: Cytochrome c oxidase polypeptide I+III
(EC 1.9.3.1) (Cytochrome c aa(3) subunit 1) - Thermus
thermophilus (strain HB8 / ATCC 27634 / DSM 579)
Length = 791
Score = 46.8 bits (106), Expect = 4e-04
Identities = 43/181 (23%), Positives = 61/181 (33%), Gaps = 1/181 (0%)
Frame = +3
Query: 15 TRKHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXX 194
T HK IG +Y +L P + + YN I+T H
Sbjct: 21 TVDHKKIGLMYTATAFFAFALAGVFSLLIRTQLAVPNNQFLTGEQYNQILTLHGATMLFF 80
Query: 195 XXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGA-GTG*T 371
N +VPL+LGA D+A PR+N + GA G T
Sbjct: 81 FIIQAGLTGFGNFVVPLMLGARDVALPRVNAFSYWAFLGAIVLALMSYFFPGGAPSVGWT 140
Query: 372 VYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*A 551
Y P S A VD + ++ L G SS S ++P++V +
Sbjct: 141 FYYPFS---AQSESGVDFYLAAILLLGFSSLLGNANFVATIYNLRAQGMSLWKMPIYVWS 197
Query: 552 V 554
V
Sbjct: 198 V 198
>UniRef50_A7BSH8 Cluster: Cytochrome c oxidase aa3, subunit 1; n=1;
Beggiatoa sp. PS|Rep: Cytochrome c oxidase aa3, subunit
1 - Beggiatoa sp. PS
Length = 525
Score = 46.4 bits (105), Expect = 5e-04
Identities = 41/155 (26%), Positives = 55/155 (35%), Gaps = 5/155 (3%)
Frame = +3
Query: 9 IGTRKHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDD-QIYNTIVTAHAXXX 185
I T HK +G LY EL G I DD +YNT + H
Sbjct: 9 IFTTDHKRVGILYLIGSIAAFAVAGIMAMLIRLELSQIGPTITDDPSVYNTWLYFHGAAM 68
Query: 186 XXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG 365
N +PL++GA D+AFPR+N + + +
Sbjct: 69 ILAFQIPALTGFFANYFIPLMIGAKDVAFPRVNALSVWLFYAGVLVALTTFFIPDPPDIM 128
Query: 366 *TVYPPLS----SNIAHRGRSVDLAIFSLHLAGIS 458
T YPP S N A SV L F+ L G++
Sbjct: 129 WTGYPPYSIITHGNTAFYTFSVLLLGFASILGGVN 163
>UniRef50_Q7NQZ0 Cluster: Cytochrome o ubiquinol oxidase, subunit I;
n=22; Bacteria|Rep: Cytochrome o ubiquinol oxidase,
subunit I - Chromobacterium violaceum
Length = 680
Score = 44.8 bits (101), Expect = 0.002
Identities = 27/78 (34%), Positives = 39/78 (50%)
Frame = +3
Query: 228 N*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHR 407
N +VPL +GA D+AFP +N++ F V N A TG YPPL+
Sbjct: 125 NIVVPLQIGARDVAFPFLNSLSFWLLVSAVILVNLSLGVGNFARTGWVAYPPLAELGFSP 184
Query: 408 GRSVDLAIFSLHLAGISS 461
VD I++L ++GI +
Sbjct: 185 DVGVDYYIWALQISGIGT 202
>UniRef50_Q9WWR2 Cluster: Ubiquinol oxidase subunit 1 (EC 1.10.3.-)
(Ubiquinol oxidase polypeptide I) (Cytochrome o subunit
1) (Oxidase BO(3) subunit 1); n=240; Bacteria|Rep:
Ubiquinol oxidase subunit 1 (EC 1.10.3.-) (Ubiquinol
oxidase polypeptide I) (Cytochrome o subunit 1) (Oxidase
BO(3) subunit 1) - Pseudomonas putida
Length = 672
Score = 44.8 bits (101), Expect = 0.002
Identities = 27/78 (34%), Positives = 38/78 (48%)
Frame = +3
Query: 228 N*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHR 407
N VPL +GA D+AFP +N++ F V A TG YPPL+
Sbjct: 124 NLAVPLQIGARDVAFPFLNSLSFYLLLAGVLLVNISLGVGEFAKTGWVAYPPLAGIQYSP 183
Query: 408 GRSVDLAIFSLHLAGISS 461
G VD I++L L+G+ +
Sbjct: 184 GVGVDYYIWALQLSGLGT 201
>UniRef50_A3SJL2 Cluster: QoxA, Quinol oxidase subunit I; n=2;
Rhodobacteraceae|Rep: QoxA, Quinol oxidase subunit I -
Roseovarius nubinhibens ISM
Length = 818
Score = 44.0 bits (99), Expect = 0.003
Identities = 38/184 (20%), Positives = 61/184 (33%)
Frame = +3
Query: 15 TRKHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXX 194
T H D+G ++ A+L P S + YN + T H
Sbjct: 26 TVNHTDLGRMFLTVAVFFFVVGGVLAMLIRAQLATPRSAFLGPEHYNQVFTMHGTIMMFL 85
Query: 195 XXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TV 374
L+P +LG+ D+AFPR+ F + +G +
Sbjct: 86 FAIPVFEGFAVY-LLPKLLGSRDLAFPRLTAYGFWCYVFGGSMMIFSLLWGIAPDSGWFM 144
Query: 375 YPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AV 554
YPPLSS + G + D + + IS+ S ++P+F
Sbjct: 145 YPPLSSTLGAPGINSDFWLIGITFVEISAIAAAVEITVTVLRYRAPGMSLSKMPIFAWYA 204
Query: 555 GITA 566
+TA
Sbjct: 205 LVTA 208
>UniRef50_P24010 Cluster: Cytochrome c oxidase subunit 1 (EC
1.9.3.1) (Cytochrome c oxidase polypeptide I)
(Cytochrome aa3 subunit 1) (Caa-3605 subunit 1) (Oxidase
aa(3) subunit 1); n=13; Bacillaceae|Rep: Cytochrome c
oxidase subunit 1 (EC 1.9.3.1) (Cytochrome c oxidase
polypeptide I) (Cytochrome aa3 subunit 1) (Caa-3605
subunit 1) (Oxidase aa(3) subunit 1) - Bacillus subtilis
Length = 622
Score = 44.0 bits (99), Expect = 0.003
Identities = 37/176 (21%), Positives = 59/176 (33%)
Frame = +3
Query: 15 TRKHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXX 194
T HK I LY +L P + Q YN ++T H
Sbjct: 21 TVDHKKIAILYLVAGGFFFLVGGIEAMFIRIQLAKPENAFLSAQAYNEVMTMHGTTMIFL 80
Query: 195 XXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TV 374
N +VPL +GA D++FP +N + F + G T
Sbjct: 81 AAMPLLFALM-NAVVPLQIGARDVSFPFLNALGFWLFFFGHIFLNLSWFLGGAPDAGWTS 139
Query: 375 YPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLF 542
Y LS + +G +D + L ++G+ + ++ +LPLF
Sbjct: 140 YASLS--LHSKGHGIDFFVLGLQISGLGTLIAGINFLATIINMRAPGMTYMRLPLF 193
>UniRef50_Q05FH1 Cluster: Cytochrome O ubiquinol oxidase subunit I;
n=1; Candidatus Carsonella ruddii PV|Rep: Cytochrome O
ubiquinol oxidase subunit I - Carsonella ruddii (strain
PV)
Length = 606
Score = 42.3 bits (95), Expect = 0.009
Identities = 24/78 (30%), Positives = 37/78 (47%)
Frame = +3
Query: 228 N*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHR 407
N ++PL +G+ D+AFP +N + F I+ A TG YPPLS
Sbjct: 119 NIIIPLQIGSKDVAFPSLNLLSFWLTFFSVLLINISLIIGEFAKTGWLGYPPLSEKTFSP 178
Query: 408 GRSVDLAIFSLHLAGISS 461
VD +S+ ++GI +
Sbjct: 179 WVGVDYWNWSIQISGIGT 196
>UniRef50_Q0AI64 Cluster: Cytochrome-c oxidase; n=3;
Proteobacteria|Rep: Cytochrome-c oxidase - Nitrosomonas
eutropha (strain C71)
Length = 703
Score = 41.9 bits (94), Expect = 0.012
Identities = 26/78 (33%), Positives = 38/78 (48%)
Frame = +3
Query: 228 N*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHR 407
N +VPL +GA D+AFP +N+I +V + G YPP + + +
Sbjct: 144 NYVVPLQIGARDVAFPILNSISLWLTAAGAALVMISLVVGAFSTGGWFGYPPYTETLYNP 203
Query: 408 GRSVDLAIFSLHLAGISS 461
G VD I+SL LA + S
Sbjct: 204 GIGVDYWIWSLTLASLGS 221
>UniRef50_Q5V018 Cluster: Cytochrome c oxidase subunit I; n=3;
Halobacteriaceae|Rep: Cytochrome c oxidase subunit I -
Haloarcula marismortui (Halobacterium marismortui)
Length = 854
Score = 41.9 bits (94), Expect = 0.012
Identities = 33/126 (26%), Positives = 45/126 (35%)
Frame = +3
Query: 15 TRKHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXX 194
T HKDIG LY EL + G+ + YN V+ H
Sbjct: 19 TTNHKDIGVLYLITALFFLVFGGVLALLFRLELISSGADLLGSMGYNQAVSTHGLLMVFW 78
Query: 195 XXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TV 374
N LVPL +GA D+AFPR+N + + G T+
Sbjct: 79 FISPFAFGFA-NYLVPLQIGADDLAFPRLNALSYWLYLFSGILMGVSFFQGTTFAGGWTM 137
Query: 375 YPPLSS 392
Y PL++
Sbjct: 138 YAPLNT 143
>UniRef50_Q9Z605 Cluster: Quinol oxidase subunit I; n=15;
Proteobacteria|Rep: Quinol oxidase subunit I -
Rhodobacter sphaeroides (Rhodopseudomonas sphaeroides)
Length = 825
Score = 41.1 bits (92), Expect = 0.020
Identities = 33/176 (18%), Positives = 60/176 (34%)
Frame = +3
Query: 15 TRKHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXX 194
T H D+G ++ A+L +P S + Y + T H
Sbjct: 26 TVNHTDLGRMFLGASVVFFLIGGILAMLIRAQLASPRSAFVGAETYAQLFTMHGTIMMFL 85
Query: 195 XXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TV 374
L+P +LG+ D+A+PR++ F + +G +
Sbjct: 86 FAIPMFEGLTIY-LLPKMLGSRDLAYPRLSAYGFWCYVLGGSMLIVALLAGIAPDSGWFM 144
Query: 375 YPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLF 542
YPPL+S + G + D + + IS+ S D++P++
Sbjct: 145 YPPLASTLGSPGINSDFWLLGITFVEISAIAAAVEIVVTVLRFRAPGMSLDRMPIY 200
>UniRef50_A0TRU9 Cluster: Cytochrome-c oxidase; n=30;
Proteobacteria|Rep: Cytochrome-c oxidase - Burkholderia
cenocepacia MC0-3
Length = 1004
Score = 39.5 bits (88), Expect = 0.062
Identities = 39/179 (21%), Positives = 60/179 (33%)
Frame = +3
Query: 9 IGTRKHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXX 188
+GT HK IG Y +L P + + Y+++ T H
Sbjct: 44 LGTVDHKRIGLRYIVTAFVFLLLGGVEALVMRIQLARPNATVLTPAQYDSLFTMHGVTMI 103
Query: 189 XXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG* 368
N L PL+LG+ D+AFPR+ + + G
Sbjct: 104 FLYALPVLSGFA-NYLWPLMLGSRDMAFPRLTAFSYWSFLFAGLFLYASFPLGAVPDGGW 162
Query: 369 TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV 545
Y PL+S G ++D+ + L GIS+ S D+LP+ V
Sbjct: 163 FNYVPLTSLDYSAGANIDIYGLGMILLGISTTGGAANFVVTLLRMRAHGMSIDRLPIIV 221
>UniRef50_Q94WV3 Cluster: Cytochrome oxidase subunit I; n=1;
Pachymerium ferrugineum|Rep: Cytochrome oxidase subunit
I - Pachymerium ferrugineum
Length = 219
Score = 39.5 bits (88), Expect = 0.062
Identities = 30/114 (26%), Positives = 37/114 (32%)
Frame = +2
Query: 272 PTNK*YKILTPTPLPYIINFKKNCRKWCRNRMNSLPPTFI*YRT*RKIRRSCYFFTTFSX 451
P NK +KIL TPL Y N C K C + +NSLP Y T R +F T
Sbjct: 79 PPNKQFKILIITPLTYTTNSIYGCSKRCSHSVNSLPAPCCKYLTLGPFRSYNHFCPTSCS 138
Query: 452 XXXXXXXXXXXXXXXXXTXXXXXXXXXXXXCMSCRDYSXXXXXXTTCFSWSYYN 613
CM +YS + S+YN
Sbjct: 139 SVFNSSLNQLYYNNHQYARYSNNPWTNPSVCMKSNNYSCTSTSFSPSIGSSHYN 192
>UniRef50_P98000 Cluster: Alternative cytochrome c oxidase subunit 1
(EC 1.9.3.1) (Alternative cytochrome c oxidase
polypeptide I) (Cytochrome BB3 subunit 1) (Oxidase BB(3)
subunit 1); n=25; Bacteria|Rep: Alternative cytochrome c
oxidase subunit 1 (EC 1.9.3.1) (Alternative cytochrome c
oxidase polypeptide I) (Cytochrome BB3 subunit 1)
(Oxidase BB(3) subunit 1) - Bradyrhizobium japonicum
Length = 591
Score = 39.5 bits (88), Expect = 0.062
Identities = 26/94 (27%), Positives = 37/94 (39%), Gaps = 2/94 (2%)
Frame = +3
Query: 108 ELGNPGSL-IGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRIN 284
+LG PG+ D Y +T H N L+PL++GA D+ FP +N
Sbjct: 66 QLGFPGTFSFIDANQYLQFITMHGMIMVIYLLTALFLGGFGNYLIPLMVGARDMVFPYVN 125
Query: 285 NIRFXXXXXXXXXXXXXXIVENG-AGTG*TVYPP 383
+ + V G G G T+YPP
Sbjct: 126 MLSYWVYLLAVLVLASAFFVPGGPTGAGWTLYPP 159
>UniRef50_Q9RR77 Cluster: Cytochrome c oxidase, subunit I; n=2;
Deinococcus|Rep: Cytochrome c oxidase, subunit I -
Deinococcus radiodurans
Length = 820
Score = 39.1 bits (87), Expect = 0.082
Identities = 34/146 (23%), Positives = 45/146 (30%)
Frame = +3
Query: 15 TRKHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXX 194
T HK IG LY +L P + YN ++T HA
Sbjct: 29 TTDHKKIGLLYIIVSILGFCLGGLLALAIRVQLALPEQTLLVGTTYNQVLTMHAAIMLFF 88
Query: 195 XXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TV 374
N +PL LG D+A PR+N G T
Sbjct: 89 FLIPLGLFGFGNYFLPLQLGVRDVALPRLNTFAVWLFIASLILVVLGLFNGGAPSVGWTF 148
Query: 375 YPPLSSNIAHRGRSVDLAIFSLHLAG 452
Y PL+ + G SV + L+ G
Sbjct: 149 YYPLTMDGNQTGVSVFMVAVILNGLG 174
>UniRef50_Q67ML1 Cluster: Cytochrome C oxidase subunit I; n=17;
Bacteria|Rep: Cytochrome C oxidase subunit I -
Symbiobacterium thermophilum
Length = 628
Score = 39.1 bits (87), Expect = 0.082
Identities = 24/92 (26%), Positives = 36/92 (39%)
Frame = +3
Query: 9 IGTRKHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXX 188
+ T HK IG +Y +L PG + + +N + T HA
Sbjct: 24 VATVDHKRIGIMYGVTGFFFFLVGGLEAWIMRLQLARPGLEVVTARTFNALFTMHATTMI 83
Query: 189 XXXXXXXXXXXXXN*LVPLILGAPDIAFPRIN 284
N +PL++GA D+AFPR+N
Sbjct: 84 FLGVMPLLSAFM-NYFLPLMIGARDVAFPRLN 114
>UniRef50_A0VUI8 Cluster: Cytochrome-c oxidase; n=1; Dinoroseobacter
shibae DFL 12|Rep: Cytochrome-c oxidase -
Dinoroseobacter shibae DFL 12
Length = 853
Score = 39.1 bits (87), Expect = 0.082
Identities = 26/112 (23%), Positives = 45/112 (40%)
Frame = +3
Query: 234 LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGR 413
L+PL++GA D+ FPR+ + + + G +Y PLS++ G
Sbjct: 124 LIPLMIGARDLVFPRLGAFGYYCYLFGGIIVLSSFLFDAAPDGGWFMYVPLSTSAYTEGL 183
Query: 414 SVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAF 569
S D + + LA I+S S ++P+ + + TAF
Sbjct: 184 SADFWLIGITLAEIASVTAAVEIIAAILCSRAPGMSLTKMPILMWYLLATAF 235
>UniRef50_A0RZ19 Cluster: Heme/copper-type cytochrome/quinol
oxidase, subunit 1; n=2; Thermoprotei|Rep:
Heme/copper-type cytochrome/quinol oxidase, subunit 1 -
Cenarchaeum symbiosum
Length = 508
Score = 38.7 bits (86), Expect = 0.11
Identities = 42/173 (24%), Positives = 59/173 (34%), Gaps = 1/173 (0%)
Frame = +3
Query: 24 HKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGS-LIGDDQIYNTIVTAHAXXXXXXXX 200
H D+G LY AEL PG+ I D +N + T H
Sbjct: 20 HTDVGLLYLISSLGFLFLGGALALLIRAELFFPGTQFIADSMTFNRMFTVHGTTLIFLFI 79
Query: 201 XXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYP 380
N VP+++ D+A+P++N I F + T P
Sbjct: 80 LPFASAVG-NYFVPIMVRYKDMAYPKLNAIAFWMIPPAGALVWLGFADFSWYAT-----P 133
Query: 381 PLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPL 539
P S I+ G + D+ IF L + GISS S Q+PL
Sbjct: 134 PYSV-ISAPGPAADMWIFGLKILGISSILGSINFIVTILKCKHPDMSLGQVPL 185
>UniRef50_A6C0L1 Cluster: Cytochrome c oxidase subunit I; n=1;
Planctomyces maris DSM 8797|Rep: Cytochrome c oxidase
subunit I - Planctomyces maris DSM 8797
Length = 606
Score = 37.9 bits (84), Expect = 0.19
Identities = 21/82 (25%), Positives = 32/82 (39%)
Frame = +3
Query: 144 QIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXX 323
+ Y + T HA N L+PL++GA D+AFP++N + +
Sbjct: 90 EFYTMLFTMHATVMIFLVIIPILAGMFGNFLIPLMIGADDMAFPKLNMLSYWFMWPAIAC 149
Query: 324 XXXXXIVENGAGTG*TVYPPLS 389
G G T YP L+
Sbjct: 150 FGMSFKYAGGPAAGWTSYPVLA 171
>UniRef50_P11947 Cluster: Cytochrome c oxidase subunit 1; n=48;
Oligohymenophorea|Rep: Cytochrome c oxidase subunit 1 -
Tetrahymena pyriformis
Length = 698
Score = 37.9 bits (84), Expect = 0.19
Identities = 22/65 (33%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Frame = +3
Query: 108 ELGNPGSLI--GDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRI 281
EL +P S GD Y +VTAH N L+P +G+ D+A+PR+
Sbjct: 88 ELAHPESPFFKGDSLRYLQVVTAHGLIMVFFVVVPILFGGFANFLIPYHVGSKDVAYPRL 147
Query: 282 NNIRF 296
N+I F
Sbjct: 148 NSIGF 152
>UniRef50_Q1H1C1 Cluster: Cytochrome-c oxidase; n=1; Methylobacillus
flagellatus KT|Rep: Cytochrome-c oxidase -
Methylobacillus flagellatus (strain KT / ATCC 51484 /
DSM 6875)
Length = 631
Score = 37.1 bits (82), Expect = 0.33
Identities = 25/112 (22%), Positives = 43/112 (38%)
Frame = +3
Query: 234 LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGR 413
++PL+LG D+ FPR+N + ++ G YPPL+ G
Sbjct: 105 IIPLMLGTRDMTFPRLNAFGYYIYLIAGVMMYAALLLRIAPDAGWFSYPPLAGASFSPGL 164
Query: 414 SVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAF 569
+D + IS+ S +++P+FV AV + +F
Sbjct: 165 GLDFYTTVVTFMEISALVAAIELIATIFKCKVPGMSLNRMPIFVWAVLVMSF 216
>UniRef50_A1ZL77 Cluster: Alternative Cytochrome c oxidase
polypeptide I (Cytochrome BB3 subunit 1) (Oxidase BB(3)
subunit 1); n=20; cellular organisms|Rep: Alternative
Cytochrome c oxidase polypeptide I (Cytochrome BB3
subunit 1) (Oxidase BB(3) subunit 1) - Microscilla
marina ATCC 23134
Length = 635
Score = 37.1 bits (82), Expect = 0.33
Identities = 35/147 (23%), Positives = 56/147 (38%), Gaps = 4/147 (2%)
Frame = +3
Query: 138 DDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXX 317
+ + Y +VT H N L+PL +GA D+A +N + +
Sbjct: 98 EPEFYLALVTMHGTIMVFFVLTAGLSGTFSNFLIPLQIGARDMASGFMNMLSYWFFFGSS 157
Query: 318 XXXXXXXIVENGAGTG-*TVYPPLSS---NIAHRGRSVDLAIFSLHLAGISSXXXXXXXX 485
+E G +G +YPPLS+ ++ G + + + S+ L IS
Sbjct: 158 VIMFASIFLETGPASGSWVIYPPLSALPQAMSGSGAGMTMWLISMALFIISVLLGGINYI 217
Query: 486 XXXXXXXXXXXSFDQLPLFV*AVGITA 566
SF +LPL + A ITA
Sbjct: 218 TTVINLRVKGMSFTRLPLTIWAFFITA 244
>UniRef50_Q6KZG3 Cluster: Cytochrome c oxidase polypeptide I/III;
n=2; Thermoplasmatales|Rep: Cytochrome c oxidase
polypeptide I/III - Picrophilus torridus
Length = 841
Score = 36.7 bits (81), Expect = 0.44
Identities = 30/108 (27%), Positives = 42/108 (38%), Gaps = 1/108 (0%)
Frame = +3
Query: 234 LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENG-AGTG*TVYPPLSSNIAHRG 410
L+PL +G+ D+ +PR+N + + + G TG TVY PLSS
Sbjct: 111 LIPLAIGSRDMIYPRMNALGYWLFLFSGIMLWSGFFLPGGNLDTGWTVYEPLSSFKFTPY 170
Query: 411 RSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AV 554
D A ++ L GI + LPLFV AV
Sbjct: 171 LGADTAAAAVVLRGIGTIIASTEILATIFKARAKGYRMMNLPLFVWAV 218
>UniRef50_Q1IUK7 Cluster: Cytochrome-c oxidase; n=2;
Acidobacteria|Rep: Cytochrome-c oxidase - Acidobacteria
bacterium (strain Ellin345)
Length = 595
Score = 33.1 bits (72), Expect = 5.4
Identities = 23/94 (24%), Positives = 38/94 (40%), Gaps = 1/94 (1%)
Frame = +3
Query: 114 GNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIR 293
G PG ++ + Y +++T H N +P+ +GA D+AFPR N +
Sbjct: 75 GAPGDVM-TPEYYLSLLTMHGTLMVFFVLTNAPFAAFGNYFLPIQIGAEDMAFPRFNMMS 133
Query: 294 FXXXXXXXXXXXXXXIVENGAG-TG*TVYPPLSS 392
F + +G +G T Y LS+
Sbjct: 134 FWTTFAAFCVLIAAFFIPDGPPISGWTAYATLSA 167
>UniRef50_Q2ABI9 Cluster: NADH-ubiquinone oxidoreductase chain 2;
n=21; Neocoleoidea|Rep: NADH-ubiquinone oxidoreductase
chain 2 - Sepia officinalis (Common cuttlefish)
Length = 375
Score = 32.7 bits (71), Expect = 7.1
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = +2
Query: 32 YWNIIFYFWYLIRNNWNIFKTFNS 103
YWNI+F+FWYLI ++ K NS
Sbjct: 348 YWNIMFHFWYLISFISHLAKINNS 371
>UniRef50_Q8ID15 Cluster: Putative uncharacterized protein
MAL13P1.352; n=2; Plasmodium|Rep: Putative
uncharacterized protein MAL13P1.352 - Plasmodium
falciparum (isolate 3D7)
Length = 1106
Score = 32.3 bits (70), Expect = 9.4
Identities = 12/19 (63%), Positives = 14/19 (73%)
Frame = +2
Query: 305 TPLPYIINFKKNCRKWCRN 361
T L Y + KK+CRKWCRN
Sbjct: 697 TKLMYCVIKKKHCRKWCRN 715
>UniRef50_P39481 Cluster: Quinol oxidase subunit 1/3; n=5;
Sulfolobaceae|Rep: Quinol oxidase subunit 1/3 -
Sulfolobus acidocaldarius
Length = 788
Score = 32.3 bits (70), Expect = 9.4
Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
Frame = +3
Query: 228 N*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLS-SNIAH 404
N LVP ++GA D+ +P+IN + F ++ G +Y PLS +
Sbjct: 80 NYLVPRMIGAHDLYWPKINALSFWMLVPAVILAAISPLL-GAVDLGWYMYAPLSVETTVN 138
Query: 405 RGRSVDLAIFSLHLAGISS 461
G +L +L L+G+SS
Sbjct: 139 YGLGTNLIQIALILSGLSS 157
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 437,589,148
Number of Sequences: 1657284
Number of extensions: 7035021
Number of successful extensions: 15027
Number of sequences better than 10.0: 92
Number of HSP's better than 10.0 without gapping: 14289
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14912
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 44392209541
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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