Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0311
         (676 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A7FT14 Cluster: Conserved domain protein; n=4; Clostrid...    33   4.8  
UniRef50_Q0W4G2 Cluster: Putative uncharacterized protein; n=1; ...    33   8.4  

>UniRef50_A7FT14 Cluster: Conserved domain protein; n=4; Clostridium
           botulinum|Rep: Conserved domain protein - Clostridium
           botulinum (strain ATCC 19397 / Type A)
          Length = 259

 Score = 33.5 bits (73), Expect = 4.8
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = -3

Query: 545 HMLTSSINEKYKRWDKRVSKKDSYNWND 462
           H +  S+N+K   W +++SK+   NW+D
Sbjct: 84  HTINKSLNQKIYMWSRKISKEGMINWSD 111


>UniRef50_Q0W4G2 Cluster: Putative uncharacterized protein; n=1;
           uncultured methanogenic archaeon RC-I|Rep: Putative
           uncharacterized protein - Uncultured methanogenic
           archaeon RC-I
          Length = 742

 Score = 32.7 bits (71), Expect = 8.4
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = -3

Query: 572 STYLPI*YTHMLTSSINEKYKRWDKRVSKKDSYNWNDCTCYII 444
           S Y+P+   +  +  I+ K  RWD       SYNW+D   Y++
Sbjct: 639 SGYIPVYSDYYRSLLISGKNGRWDYTSGGITSYNWSDANIYVL 681


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 529,723,125
Number of Sequences: 1657284
Number of extensions: 9069991
Number of successful extensions: 19960
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 19333
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19955
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 52066120554
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)