Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0311
         (676 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56741| Best HMM Match : 7tm_1 (HMM E-Value=7.2e-07)                 34   0.091
SB_29363| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.5  
SB_44193| Best HMM Match : 7tm_1 (HMM E-Value=4.4e-12)                 29   2.6  
SB_25119| Best HMM Match : Ribosomal_S27 (HMM E-Value=9.4)             29   2.6  
SB_24040| Best HMM Match : Extensin_2 (HMM E-Value=0.009)              29   4.5  
SB_19884| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.5  
SB_20844| Best HMM Match : Ion_trans (HMM E-Value=0)                   29   4.5  

>SB_56741| Best HMM Match : 7tm_1 (HMM E-Value=7.2e-07)
          Length = 276

 Score = 34.3 bits (75), Expect = 0.091
 Identities = 16/38 (42%), Positives = 21/38 (55%)
 Frame = +1

Query: 541 MCVYYIGRYVDIYDAIRFEESVTMKITYLLYKKSLPLC 654
           +C+  I RY+ I   +R+   VTM  TY   K SLP C
Sbjct: 144 LCLITIDRYISITRPLRYHTIVTMDRTYTAIKVSLPGC 181


>SB_29363| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 142

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 4/39 (10%)
 Frame = -3

Query: 359 YLLSCTKLHQQSGHQY----KTLTKVHDKGHLNYKCNRQ 255
           YLLS TK  + S +QY    ++  +V D+ +L  +CN+Q
Sbjct: 9   YLLSVTKKRRPSCYQYTASTESFAQVSDQDYLGVRCNKQ 47


>SB_44193| Best HMM Match : 7tm_1 (HMM E-Value=4.4e-12)
          Length = 863

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 12/42 (28%), Positives = 23/42 (54%)
 Frame = +1

Query: 538 NMCVYYIGRYVDIYDAIRFEESVTMKITYLLYKKSLPLCNSI 663
           ++C+  + RY+ I   +R+   VT + TY   K S+  C ++
Sbjct: 206 SLCLITVDRYISITRPLRYFAIVTKRRTYAAIKTSIAGCGTL 247


>SB_25119| Best HMM Match : Ribosomal_S27 (HMM E-Value=9.4)
          Length = 443

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 4/39 (10%)
 Frame = -3

Query: 359 YLLSCTKLHQQSGHQYKTLT----KVHDKGHLNYKCNRQ 255
           YLLS TK  + S +QY   T    +V D+ +L  +CN Q
Sbjct: 93  YLLSVTKKRRPSCYQYTASTEFFAQVSDQDYLGVRCNEQ 131


>SB_24040| Best HMM Match : Extensin_2 (HMM E-Value=0.009)
          Length = 530

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 12/26 (46%), Positives = 19/26 (73%)
 Frame = +3

Query: 450 ITSAIVPIIAIFFTHALIPSFVLFIN 527
           +TSA +PII++ FT A+IP   + +N
Sbjct: 483 VTSAPIPIISMGFTSAIIPIISMGVN 508


>SB_19884| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3486

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 17/40 (42%), Positives = 23/40 (57%)
 Frame = +3

Query: 414 RL*SRLNKCNNNITSAIVPIIAIFFTHALIPSFVLFINAT 533
           RL S L + ++N+T AIV  I+  FT A +P   L   AT
Sbjct: 293 RLTSELKRLDHNVTLAIVDQISSVFTCAELPIHNLVTTAT 332


>SB_20844| Best HMM Match : Ion_trans (HMM E-Value=0)
          Length = 2675

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -3

Query: 176  RYDRAFVRFFFIINCVFLEI 117
            RY  AFV F  ++NCVFL +
Sbjct: 1038 RYFEAFVIFIILVNCVFLAL 1057


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,676,909
Number of Sequences: 59808
Number of extensions: 296774
Number of successful extensions: 784
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 662
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 783
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1733301648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)