Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0310
         (682 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.05 |cob1|cob|cytochrome b, Cob1|Schizosaccharomyces pombe|...   109   5e-25
SPBC418.02 |||NatA N-acetyltransferase complex subunit |Schizosa...    27   1.9  
SPBC713.04c |||U3 snoRNP-associated protein Utp1|Schizosaccharom...    27   2.5  
SPBC776.18c |pmh1|mcr1|transcription factor TFIIH complex subuni...    26   5.8  
SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1 |Schizosacc...    26   5.8  
SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual      25   7.7  

>SPMIT.05 |cob1|cob|cytochrome b, Cob1|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 387

 Score =  109 bits (261), Expect = 5e-25
 Identities = 57/142 (40%), Positives = 76/142 (53%), Gaps = 2/142 (1%)
 Frame = +3

Query: 261 FFICIYLHIGLGIYYESFNLKYV*LXXXXXXXXXXXXXXXX--YVLP*GQISFWGATVIT 434
           FFI +YLHIG G+YY S+                         Y LP  Q+SFWGATVIT
Sbjct: 89  FFIFLYLHIGRGLYYGSYKYPRTMTWNIGVIIFLLTIITAFLGYCLPANQMSFWGATVIT 148

Query: 435 NLLSAIPYLGTILVN*I*GGFAVDNATLTRFYTXXXXXXXXXXXXXXXXXXXXXQTGSNN 614
           NLLSA+P++G  LV+ + GGF+V N TL RF++                       GS+N
Sbjct: 149 NLLSAVPFIGDDLVHLLWGGFSVSNPTLNRFFSLHYLMPFVIAALSVMHLIALHTNGSSN 208

Query: 615 PLGLNRNLDKIPFHPFFTFKDL 680
           PLG+  N+D+IP +P++  KDL
Sbjct: 209 PLGVTANMDRIPMNPYYLIKDL 230



 Score = 68.5 bits (160), Expect = 8e-13
 Identities = 34/92 (36%), Positives = 48/92 (52%)
 Frame = +1

Query: 10  KNTPIFKIINNXXXXXXXXXXXXXXXXXXXXXALCLIIQIITGLFLTIYYTANIEIAFYR 189
           K+ P   + NN                     A  L+IQI+ G+ L  +Y  N+++AF  
Sbjct: 5   KSNPFLALANNYMIDAPEPSNISYFWNFGSLLACVLVIQIVIGILLACFYIPNMDLAFLS 64

Query: 190 VNYICRNVNYG*IIRTLHANGASFFLFAFIYI 285
           V  I R+VNYG ++R  HANGASFF F F+Y+
Sbjct: 65  VERIVRDVNYGFLLRAFHANGASFF-FIFLYL 95


>SPBC418.02 |||NatA N-acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = +2

Query: 335 NWNYNFIYTNSNCFHRLCLTLRSNIFLGGN 424
           NWN      +SN  +RLC TL  + FL GN
Sbjct: 132 NWNRLLQLDSSNLEYRLCFTL--SAFLSGN 159


>SPBC713.04c |||U3 snoRNP-associated protein
           Utp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 854

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 13/52 (25%), Positives = 24/52 (46%)
 Frame = +2

Query: 335 NWNYNFIYTNSNCFHRLCLTLRSNIFLGGNRNYKSIICNPLFRNYISKLNLR 490
           N +Y F + N      + L+  S + L  +   + I+CN L R+ +   N +
Sbjct: 45  NTSYTFPFENHKNISHIALSPTSTLLLSVDEEGRCILCNFLRRSVLHYFNFK 96


>SPBC776.18c |pmh1|mcr1|transcription factor TFIIH complex subunit
           Pmh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 318

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 10/34 (29%), Positives = 16/34 (47%)
 Frame = +2

Query: 362 NSNCFHRLCLTLRSNIFLGGNRNYKSIICNPLFR 463
           N  C+H++C +    IF  G     +  CN + R
Sbjct: 31  NPECYHKMCESCVDRIFTTGPAQCPTPGCNKILR 64


>SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1072

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = +3

Query: 207 KCKLWLNNSNITC*WSFIFFICIYLHIGLGIYYE 308
           K   W++  +ITC  SF   +C+ +  GL +++E
Sbjct: 480 KLHSWISPMSITCGSSFADNVCVAVAGGLILFFE 513


>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 188

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
 Frame = +1

Query: 130 ITGLFLTIYYTANIEIAFYRVNYICR---NVNYG*IIRTLHANGASFFLFAFIYIS 288
           +TG+F      ++ E  F+R+ ++C     + Y  I  TLH   A  FLF+   +S
Sbjct: 1   MTGMFFFASLFSSFESLFFRLFFVCSFFFPLLYSFIFATLH---AFVFLFSHTLVS 53


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,318,282
Number of Sequences: 5004
Number of extensions: 41570
Number of successful extensions: 71
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 70
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)