Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0310
         (682 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12207| Best HMM Match : Cytochrom_B_N (HMM E-Value=2.3e-07)         47   1e-05
SB_27597| Best HMM Match : Cytochrom_B_N (HMM E-Value=0)               47   2e-05
SB_22524| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.6  

>SB_12207| Best HMM Match : Cytochrom_B_N (HMM E-Value=2.3e-07)
          Length = 102

 Score = 47.2 bits (107), Expect = 1e-05
 Identities = 21/46 (45%), Positives = 34/46 (73%), Gaps = 1/46 (2%)
 Frame = +1

Query: 151 IYYTANIEIAFYRVNYICRNVNYG*IIRTLHANGAS-FFLFAFIYI 285
           ++Y A++ +AF  V++I R+VNYG ++R  HANGAS FF+  + +I
Sbjct: 1   MHYCADVSLAFASVDHIMRDVNYGFLLRYAHANGASMFFICLYAHI 46



 Score = 35.5 bits (78), Expect = 0.040
 Identities = 12/20 (60%), Positives = 17/20 (85%)
 Frame = +3

Query: 258 IFFICIYLHIGLGIYYESFN 317
           +FFIC+Y HIG G+YY S++
Sbjct: 37  MFFICLYAHIGRGLYYGSYS 56


>SB_27597| Best HMM Match : Cytochrom_B_N (HMM E-Value=0)
          Length = 135

 Score = 46.8 bits (106), Expect = 2e-05
 Identities = 21/50 (42%), Positives = 31/50 (62%)
 Frame = +3

Query: 384 YVLP*GQISFWGATVITNLLSAIPYLGTILVN*I*GGFAVDNATLTRFYT 533
           Y LP  QI +W   ++T +  AIP +G+ LV  + G  +V  +TLTRFY+
Sbjct: 64  YSLPRDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSASVGQSTLTRFYS 113


>SB_22524| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 353

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +3

Query: 198 YLPKCKLWLNNSNITC*WSFIFFICIYLHIGLGIYY 305
           Y P  K   N+S+ +     IFF+  +LHI + IYY
Sbjct: 226 YRPAYKALKNDSSFSY---IIFFLIFFLHISINIYY 258


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,575,674
Number of Sequences: 59808
Number of extensions: 259261
Number of successful extensions: 411
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 385
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 411
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1757375282
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)