Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0309
(624 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro... 31 0.18
SPAC23H3.10 |ssr2||SWI/SNF and RSC complex subunit Ssr2|Schizosa... 29 0.55
SPBC1289.16c ||SPBC8E4.06|copper amine oxidase |Schizosaccharomy... 27 2.2
SPAC105.01c |||potassium ion/proton antiporter|Schizosaccharomyc... 27 2.9
SPBC8D2.19 |mde3||serine/threonine protein kinase Mde3|Schizosac... 26 5.1
SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces p... 25 6.7
SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable element|Schizosa... 25 6.7
SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyc... 25 6.7
SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyce... 25 6.7
SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable element|Schiz... 25 6.7
SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomy... 25 6.7
SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyc... 25 6.7
SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyc... 25 6.7
SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable element|Schizo... 25 6.7
SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomy... 25 6.7
SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable element|Schizos... 25 6.7
SPBC13G1.07 |||palmitoyltransferase|Schizosaccharomyces pombe|ch... 25 8.9
SPBC530.06c |||translation initiation factor eIF3 alpha subunit ... 25 8.9
SPBC29A10.07 |||nucleoporin Pom152|Schizosaccharomyces pombe|chr... 25 8.9
SPAC29E6.09 ||SPAC30.13|sequence orphan|Schizosaccharomyces pomb... 25 8.9
>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting
protein 3 homolog Bud6|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1385
Score = 30.7 bits (66), Expect = 0.18
Identities = 19/62 (30%), Positives = 29/62 (46%)
Frame = -2
Query: 332 NYNKSLNVSMLNNNVKLVCNNFPNCYFIDYFGSSYNKNKYIICQKINYIIDSIDYDTKYL 153
N + + V +N + F N Y I + G SY N KI+Y+++ + D KY
Sbjct: 798 NQTRKVKVESPLSNANELGELFSNVYKISFSGDSYELNIEDPDTKISYLLEDLS-DLKYK 856
Query: 152 SL 147
SL
Sbjct: 857 SL 858
>SPAC23H3.10 |ssr2||SWI/SNF and RSC complex subunit
Ssr2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 503
Score = 29.1 bits (62), Expect = 0.55
Identities = 23/87 (26%), Positives = 40/87 (45%), Gaps = 2/87 (2%)
Frame = -2
Query: 266 PNCYFIDYFGSSYNKNKYIICQKINYIIDSIDYDTKYLSLKNNKNS--TLHTIEIKNDTL 93
PNCY F SS+N + + +C +D+ID++ +N+ + L IE D
Sbjct: 217 PNCYKQGRFSSSFNSSDF-LC------MDAIDFNHDEEKPWSNQETLLLLEAIETYGDDW 269
Query: 92 GNLTKNNSRYTQRTILDYFKKINIQTP 12
+ + T+ L +F +I I+ P
Sbjct: 270 NQIALHVGSRTKEQCLIHFLQIPIEDP 296
>SPBC1289.16c ||SPBC8E4.06|copper amine oxidase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 794
Score = 27.1 bits (57), Expect = 2.2
Identities = 15/61 (24%), Positives = 28/61 (45%)
Frame = -2
Query: 233 SYNKNKYIICQKINYIIDSIDYDTKYLSLKNNKNSTLHTIEIKNDTLGNLTKNNSRYTQR 54
S ++++ C +IN ++D + + +KN TL + I +T+ N T R
Sbjct: 441 SAENHEHLFCLRINPMLDGLRNSVATVDALRDKNGTLVSKYIIPETVTEAISNYDSSTGR 500
Query: 53 T 51
T
Sbjct: 501 T 501
>SPAC105.01c |||potassium ion/proton antiporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 898
Score = 26.6 bits (56), Expect = 2.9
Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Frame = +1
Query: 1 LVQLGVCIFIFLK*SSIVL*VYLELFLVK-LPKVSFFISIVCNVLFLLFFND 153
L+ LG C+F+F+ +V + ++ +K P SF ++ VL FF D
Sbjct: 228 LLALGWCLFLFIAIKPLVYLLAVKTRSLKDKPSESFICIVLSMVLVSAFFTD 279
>SPBC8D2.19 |mde3||serine/threonine protein kinase
Mde3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 559
Score = 25.8 bits (54), Expect = 5.1
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = -2
Query: 203 QKINYIIDSIDYDTKYLSLKNNKNSTLHTIEIKNDTLGN 87
++I+Y++ SIDY Y N N ++ N+T+G+
Sbjct: 435 EQIDYLLTSIDYLPSYKPPSNGSNIAINAF---NETVGD 470
>SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 6.7
Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 6/61 (9%)
Frame = -2
Query: 194 NYIIDSIDYDTKYLSLKNNKNSTL-HTIEIKNDTLGN-----LTKNNSRYTQRTILDYFK 33
N ++ DTK L+L NN++ + I++K+ L N L N+++ T+ I Y +
Sbjct: 862 NQVVTEYTNDTKLLNLLNNEDKRVEENIQLKDGLLINSKDQILLPNDTQLTRTIIKKYHE 921
Query: 32 K 30
+
Sbjct: 922 E 922
>SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 6.7
Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 6/61 (9%)
Frame = -2
Query: 194 NYIIDSIDYDTKYLSLKNNKNSTL-HTIEIKNDTLGN-----LTKNNSRYTQRTILDYFK 33
N ++ DTK L+L NN++ + I++K+ L N L N+++ T+ I Y +
Sbjct: 862 NQVVTEYTNDTKLLNLLNNEDKRVEENIQLKDGLLINSKDQILLPNDTQLTRTIIKKYHE 921
Query: 32 K 30
+
Sbjct: 922 E 922
>SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 6.7
Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 6/61 (9%)
Frame = -2
Query: 194 NYIIDSIDYDTKYLSLKNNKNSTL-HTIEIKNDTLGN-----LTKNNSRYTQRTILDYFK 33
N ++ DTK L+L NN++ + I++K+ L N L N+++ T+ I Y +
Sbjct: 862 NQVVTEYTNDTKLLNLLNNEDKRVEENIQLKDGLLINSKDQILLPNDTQLTRTIIKKYHE 921
Query: 32 K 30
+
Sbjct: 922 E 922
>SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 6.7
Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 6/61 (9%)
Frame = -2
Query: 194 NYIIDSIDYDTKYLSLKNNKNSTL-HTIEIKNDTLGN-----LTKNNSRYTQRTILDYFK 33
N ++ DTK L+L NN++ + I++K+ L N L N+++ T+ I Y +
Sbjct: 862 NQVVTEYTNDTKLLNLLNNEDKRVEENIQLKDGLLINSKDQILLPNDTQLTRTIIKKYHE 921
Query: 32 K 30
+
Sbjct: 922 E 922
>SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 6.7
Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 6/61 (9%)
Frame = -2
Query: 194 NYIIDSIDYDTKYLSLKNNKNSTL-HTIEIKNDTLGN-----LTKNNSRYTQRTILDYFK 33
N ++ DTK L+L NN++ + I++K+ L N L N+++ T+ I Y +
Sbjct: 862 NQVVTEYTNDTKLLNLLNNEDKRVEENIQLKDGLLINSKDQILLPNDTQLTRTIIKKYHE 921
Query: 32 K 30
+
Sbjct: 922 E 922
>SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 6.7
Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 6/61 (9%)
Frame = -2
Query: 194 NYIIDSIDYDTKYLSLKNNKNSTL-HTIEIKNDTLGN-----LTKNNSRYTQRTILDYFK 33
N ++ DTK L+L NN++ + I++K+ L N L N+++ T+ I Y +
Sbjct: 862 NQVVTEYTNDTKLLNLLNNEDKRVEENIQLKDGLLINSKDQILLPNDTQLTRTIIKKYHE 921
Query: 32 K 30
+
Sbjct: 922 E 922
>SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 6.7
Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 6/61 (9%)
Frame = -2
Query: 194 NYIIDSIDYDTKYLSLKNNKNSTL-HTIEIKNDTLGN-----LTKNNSRYTQRTILDYFK 33
N ++ DTK L+L NN++ + I++K+ L N L N+++ T+ I Y +
Sbjct: 862 NQVVTEYTNDTKLLNLLNNEDKRVEENIQLKDGLLINSKDQILLPNDTQLTRTIIKKYHE 921
Query: 32 K 30
+
Sbjct: 922 E 922
>SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 6.7
Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 6/61 (9%)
Frame = -2
Query: 194 NYIIDSIDYDTKYLSLKNNKNSTL-HTIEIKNDTLGN-----LTKNNSRYTQRTILDYFK 33
N ++ DTK L+L NN++ + I++K+ L N L N+++ T+ I Y +
Sbjct: 862 NQVVTEYTNDTKLLNLLNNEDKRVEENIQLKDGLLINSKDQILLPNDTQLTRTIIKKYHE 921
Query: 32 K 30
+
Sbjct: 922 E 922
>SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 6.7
Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 6/61 (9%)
Frame = -2
Query: 194 NYIIDSIDYDTKYLSLKNNKNSTL-HTIEIKNDTLGN-----LTKNNSRYTQRTILDYFK 33
N ++ DTK L+L NN++ + I++K+ L N L N+++ T+ I Y +
Sbjct: 862 NQVVTEYTNDTKLLNLLNNEDKRVEENIQLKDGLLINSKDQILLPNDTQLTRTIIKKYHE 921
Query: 32 K 30
+
Sbjct: 922 E 922
>SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 6.7
Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 6/61 (9%)
Frame = -2
Query: 194 NYIIDSIDYDTKYLSLKNNKNSTL-HTIEIKNDTLGN-----LTKNNSRYTQRTILDYFK 33
N ++ DTK L+L NN++ + I++K+ L N L N+++ T+ I Y +
Sbjct: 862 NQVVTEYTNDTKLLNLLNNEDKRVEENIQLKDGLLINSKDQILLPNDTQLTRTIIKKYHE 921
Query: 32 K 30
+
Sbjct: 922 E 922
>SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 6.7
Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 6/61 (9%)
Frame = -2
Query: 194 NYIIDSIDYDTKYLSLKNNKNSTL-HTIEIKNDTLGN-----LTKNNSRYTQRTILDYFK 33
N ++ DTK L+L NN++ + I++K+ L N L N+++ T+ I Y +
Sbjct: 862 NQVVTEYTNDTKLLNLLNNEDKRVEENIQLKDGLLINSKDQILLPNDTQLTRTIIKKYHE 921
Query: 32 K 30
+
Sbjct: 922 E 922
>SPBC13G1.07 |||palmitoyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 356
Score = 25.0 bits (52), Expect = 8.9
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = +2
Query: 62 YILNYF*LNYLKYHFLFQLCVTYYFYCFSMTSISYH 169
+I N LN +Y FLF LC T S+ + YH
Sbjct: 190 WINNCVGLNNARYFFLFLLC-TIQLLFHSILRLGYH 224
>SPBC530.06c |||translation initiation factor eIF3 alpha subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1173
Score = 25.0 bits (52), Expect = 8.9
Identities = 25/87 (28%), Positives = 36/87 (41%), Gaps = 1/87 (1%)
Frame = -2
Query: 470 ENLNLNKDDKLVIGVGENDTNPFKLLIELSATLKRL-YEVTVIVLRINYNKSLNVSMLNN 294
E + L + KL V N P K L+ +LK + E I L K+ + N+
Sbjct: 589 ELVQLFYEMKLQAFVNANHNAPKKK--NLNDSLKSVELEGNGIKLSSEKGKNNVNKVRND 646
Query: 293 NVKLVCNNFPNCYFIDYFGSSYNKNKY 213
N + C P+C+ DY NK Y
Sbjct: 647 NARFDCGFNPDCFRSDYIFPPDNKELY 673
>SPBC29A10.07 |||nucleoporin Pom152|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1250
Score = 25.0 bits (52), Expect = 8.9
Identities = 14/69 (20%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Frame = -2
Query: 575 AAKLLKTR*YTNYEKYRITAVTKP-FASSEEVFKCCENLNLNKDDKLVIGVGENDTNPFK 399
A ++ + Y R+ ++ K F + E+++ C N ++ + + +I + +PF
Sbjct: 939 AVTIVNNQSYQAVVLQRVNSLPKASFMNVEKLYTFCINTDVTQSNAQLIAIQLQGASPFS 998
Query: 398 LLIELSATL 372
L+I + L
Sbjct: 999 LVIGIKNEL 1007
>SPAC29E6.09 ||SPAC30.13|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 339
Score = 25.0 bits (52), Expect = 8.9
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = -2
Query: 215 YIICQKINYIIDSIDYDTKYLSLKNNKNSTLH 120
Y+ Q +YI D+ LSLKN+ N T++
Sbjct: 168 YVERQLRSYISDTSSSKQSLLSLKNSSNGTVY 199
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,111,500
Number of Sequences: 5004
Number of extensions: 39850
Number of successful extensions: 138
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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