Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0309
         (624 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1411 + 37127098-37128279                                         33   0.18 
07_03_0039 - 12718972-12720699                                         30   1.7  
02_05_0039 + 25335690-25335883,25335984-25336131,25337292-253373...    29   2.3  
04_04_1312 + 32565447-32565585,32566008-32566060,32566139-325667...    29   3.0  
04_04_1311 - 32559549-32559674,32559761-32560078,32560158-325602...    29   3.0  
06_02_0346 - 14837982-14838122,14838208-14838327,14838411-148385...    28   6.9  
04_04_0723 - 27572697-27572793,27572842-27572903,27573229-27573414     28   6.9  

>01_06_1411 + 37127098-37128279
          Length = 393

 Score = 33.1 bits (72), Expect = 0.18
 Identities = 21/70 (30%), Positives = 32/70 (45%)
 Frame = -2

Query: 395 LIELSATLKRLYEVTVIVLRINYNKSLNVSMLNNNVKLVCNNFPNCYFIDYFGSSYNKNK 216
           LI+  A + RL    +     N     N+S +N+NV  +C   PNC F   +G       
Sbjct: 185 LIDSHAAVFRLNNARISGFAANVGAKTNLSFINSNVLHLCARRPNC-FCHPYGDGVPILL 243

Query: 215 YIICQKINYI 186
           Y ICQ  +++
Sbjct: 244 Y-ICQAAHFL 252


>07_03_0039 - 12718972-12720699
          Length = 575

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = -2

Query: 260 CYFIDYFGSSYNKNKYIICQKINYIIDSIDYDTKYLSL 147
           C  +  F    N+ K ++  K+NY+   + Y  +YL L
Sbjct: 452 CQIVSVFPKILNQGKKMLNDKLNYMTKELGYSVEYLEL 489


>02_05_0039 +
           25335690-25335883,25335984-25336131,25337292-25337349,
           25337652-25338116,25338435-25338575,25338694-25339934
          Length = 748

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
 Frame = -2

Query: 299 NNNVKLVCNNFPNCYFIDYFGSSYNKNKYIICQ-KINYIIDSIDYDTKYLSLKNNK-NST 126
           N NV         CY ++ F  +    K  + +  ++Y++ +I  D  Y+S+ N + NST
Sbjct: 149 NTNVPFPFGLEEGCYALEKFRLNCRAGKLFLDRGDVDYLVRNISVDNGYMSVTNEQNNST 208

Query: 125 LHTIEI 108
            +  EI
Sbjct: 209 SNGTEI 214


>04_04_1312 + 32565447-32565585,32566008-32566060,32566139-32566771,
            32566844-32566972,32567052-32567144,32567220-32567336,
            32567412-32567512,32567603-32567870,32568236-32568265,
            32568361-32568572,32568650-32568731,32568804-32569555,
            32569640-32569811,32570412-32570498,32570578-32570895,
            32570982-32571107
          Length = 1103

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 22/82 (26%), Positives = 37/82 (45%)
 Frame = -2

Query: 311  VSMLNNNVKLVCNNFPNCYFIDYFGSSYNKNKYIICQKINYIIDSIDYDTKYLSLKNNKN 132
            V+    N+K+  + F + YFI+ FG+S   +     +K + + D    D K   L    N
Sbjct: 1022 VAYTGTNIKVNDSAFASMYFIENFGTSGEIHFNRFLEKNDEVKDEFIKDVKLGLLPYLLN 1081

Query: 131  STLHTIEIKNDTLGNLTKNNSR 66
               +T  + N+ +  L K N R
Sbjct: 1082 HKNNTGTVPNE-ISELIKKNKR 1102


>04_04_1311 - 32559549-32559674,32559761-32560078,32560158-32560244,
            32560845-32561016,32561101-32561852,32561925-32562006,
            32562084-32562295,32562391-32562420,32562786-32563074,
            32563143-32563243,32563319-32563435,32563511-32563603,
            32563683-32563811,32563884-32564516,32564765-32564844,
            32565152-32565164
          Length = 1077

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 22/82 (26%), Positives = 37/82 (45%)
 Frame = -2

Query: 311  VSMLNNNVKLVCNNFPNCYFIDYFGSSYNKNKYIICQKINYIIDSIDYDTKYLSLKNNKN 132
            V+    N+K+  + F + YFI+ FG+S   +     +K + + D    D K   L    N
Sbjct: 996  VAYTGTNIKVNDSAFASMYFIENFGTSGEIHFNRFLEKNDEVKDEFIKDVKLGLLPYLLN 1055

Query: 131  STLHTIEIKNDTLGNLTKNNSR 66
               +T  + N+ +  L K N R
Sbjct: 1056 HKNNTGTVPNE-ISELIKKNKR 1076


>06_02_0346 -
           14837982-14838122,14838208-14838327,14838411-14838564,
           14838793-14838866,14838962-14839095,14839207-14839326,
           14843174-14843308,14843842-14843976,14844343-14845003,
           14845103-14845264,14845348-14845510,14880834-14881021
          Length = 728

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 11/31 (35%), Positives = 21/31 (67%)
 Frame = -2

Query: 506 PFASSEEVFKCCENLNLNKDDKLVIGVGEND 414
           P A +E + KC + +NL+K ++L++ +  ND
Sbjct: 661 PRALAEHLSKCLKGVNLSKAEQLLLPIINND 691


>04_04_0723 - 27572697-27572793,27572842-27572903,27573229-27573414
          Length = 114

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -2

Query: 509 KPFASSEEVFKCCENLNLNKDDKLVIGVGENDTNPFK 399
           +P +S   +  C E+LN+ K  +   G G  DTN  K
Sbjct: 23  QPKSSLSIIVSCKEHLNIRKSKEKKAGSGSKDTNKRK 59


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,181,677
Number of Sequences: 37544
Number of extensions: 175926
Number of successful extensions: 376
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 371
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 376
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1513903616
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)