Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0309
(624 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_58047| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.015
SB_30916| Best HMM Match : C2 (HMM E-Value=1.2e-17) 34 0.082
SB_51895| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.19
SB_54733| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.8
SB_22570| Best HMM Match : Filament (HMM E-Value=0.1) 30 1.8
SB_39751| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.3
SB_34774| Best HMM Match : DUF1610 (HMM E-Value=1.4) 29 2.3
SB_11187| Best HMM Match : F5_F8_type_C (HMM E-Value=3.7e-10) 29 2.3
SB_24400| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.3
SB_21701| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_28794| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_22639| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.1
SB_41436| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
>SB_58047| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 542
Score = 36.7 bits (81), Expect = 0.015
Identities = 18/52 (34%), Positives = 30/52 (57%)
Frame = -2
Query: 209 ICQKINYIIDSIDYDTKYLSLKNNKNSTLHTIEIKNDTLGNLTKNNSRYTQR 54
+C NY + D + L +++NKN+TLH + +N+TL ++N YT R
Sbjct: 75 MCDNENYTLHMRDNENYTLRMRDNKNNTLHMRDNENNTL--RMRDNENYTLR 124
Score = 31.5 bits (68), Expect = 0.57
Identities = 17/64 (26%), Positives = 30/64 (46%)
Frame = -2
Query: 194 NYIIDSIDYDTKYLSLKNNKNSTLHTIEIKNDTLGNLTKNNSRYTQRTILDYFKKINIQT 15
NY + D + L +++N+N TL + KN+TL N+ R +Y ++
Sbjct: 70 NYTLHMCDNENYTLHMRDNENYTLRMRDNKNNTLHMRDNENNTLRMRDNENYTLRMKRLC 129
Query: 14 PNCT 3
NC+
Sbjct: 130 ANCS 133
Score = 29.9 bits (64), Expect = 1.8
Identities = 16/50 (32%), Positives = 27/50 (54%)
Frame = -2
Query: 209 ICQKINYIIDSIDYDTKYLSLKNNKNSTLHTIEIKNDTLGNLTKNNSRYT 60
+C NY + + + L +++NKN+TL E +N TL ++N YT
Sbjct: 25 MCNNENYTLRMRENENYTLHMRDNKNNTLRMRENENYTLH--MRDNENYT 72
>SB_30916| Best HMM Match : C2 (HMM E-Value=1.2e-17)
Length = 809
Score = 34.3 bits (75), Expect = 0.082
Identities = 29/108 (26%), Positives = 55/108 (50%), Gaps = 3/108 (2%)
Frame = -2
Query: 356 VTVIVL-RINYNKSLNVSMLNNNVKLVCNNFPNCYFIDYFGSSYNKNKYIICQKINYIID 180
V +I++ IN N + +S++ NN K++ NN+ Y D N N II I+
Sbjct: 601 VVIIIIFIINNNDIIIISLIFNNNKII-NNYDIIYNNDTIVIDSNNNNDII------IVI 653
Query: 179 SIDYDTKYLSLKNNKNSTLHTIE--IKNDTLGNLTKNNSRYTQRTILD 42
+ T + N NS++H I+ ++ + +G + + S+Y +T++D
Sbjct: 654 ISNTTTSCQQQQQNCNSSIHIIDPYVEVEIIG-IPADTSKYRTKTVID 700
>SB_51895| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1368
Score = 33.1 bits (72), Expect = 0.19
Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Frame = -2
Query: 236 SSYNKNKYIICQKINYIIDSIDYDTKYLSLKNNKNSTLHTIEIKNDT--LGNLTKNNSRY 63
+S K+ I Q+ + YDT Y + +NK+ST HT + NDT + TK+ +
Sbjct: 1258 ASDTKHTTIDTQQTTSVTQQATYDT-YHTANDNKHSTSHTKHLTNDTYHTASDTKHTASD 1316
Query: 62 TQRTILD 42
T+ T D
Sbjct: 1317 TKHTASD 1323
>SB_54733| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 303
Score = 29.9 bits (64), Expect = 1.8
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = -2
Query: 194 NYIIDSIDYDTKYLSLKNNKNSTLHTIEIKNDTLGNLTKNNS 69
N ID++D D L + N+TL T+E+ N T L +N+
Sbjct: 200 NTTIDALDPDNTTLDALDPDNTTLDTLELDNMTRDGLDPDNT 241
>SB_22570| Best HMM Match : Filament (HMM E-Value=0.1)
Length = 601
Score = 29.9 bits (64), Expect = 1.8
Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Frame = -2
Query: 251 IDYFGSSYNKNKYIICQKINYIIDSIDYDTKYLSLKNNKNSTLHTIEIKNDTL-GNLTKN 75
++Y Y K KY++ + + D Y + + S + +IE +N++L L K
Sbjct: 79 LEYLDKEYTKQKYVLDELQERLNDLTQERENYETREKTLQSKITSIEKENNSLRDELNKT 138
Query: 74 NSRYTQRT 51
S TQ T
Sbjct: 139 VSELTQTT 146
>SB_39751| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 128
Score = 29.5 bits (63), Expect = 2.3
Identities = 28/91 (30%), Positives = 39/91 (42%), Gaps = 5/91 (5%)
Frame = -2
Query: 374 LKRLYEVTVIVLRINYNKSLNVSMLNNNVKLVCNNFPNCYFIDYFGSSYNKNKYIICQK- 198
L+ + + VI + N N S+N N N + NN N + S N N II
Sbjct: 18 LEEISSILVINIMTNNNNSIN----NKNSEKSSNNINNDFNYKNINKSNNINNIIINNNN 73
Query: 197 -INYIIDSIDYDT---KYLSLKNNKNSTLHT 117
IN+ I+S+ T K S+K ST T
Sbjct: 74 YINHDINSLSTTTINNKITSIKTTSLSTSST 104
>SB_34774| Best HMM Match : DUF1610 (HMM E-Value=1.4)
Length = 576
Score = 29.5 bits (63), Expect = 2.3
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +1
Query: 64 YLELFLVKLPKVSFFISIVCNVLFLLFFN 150
+ ++ L KLPKV F + C F +FFN
Sbjct: 338 FFQMALAKLPKVFGFEDVACKGAFPIFFN 366
>SB_11187| Best HMM Match : F5_F8_type_C (HMM E-Value=3.7e-10)
Length = 1163
Score = 29.5 bits (63), Expect = 2.3
Identities = 16/56 (28%), Positives = 33/56 (58%)
Frame = +2
Query: 53 FFEYILNYF*LNYLKYHFLFQLCVTYYFYCFSMTSISYHNLYYL*CSLFFGILYTY 220
FF I ++F + + +HF F + +T++F+ FS+ I++H + + FF + T+
Sbjct: 965 FFSIITHHFFFSIITHHFFFSI-ITHHFF-FSI--ITHHYFFSIITHHFFFSIITH 1016
Score = 29.5 bits (63), Expect = 2.3
Identities = 16/59 (27%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Frame = +2
Query: 53 FFEYILNYF*LNYLKYHFLFQLCVTYYFYCFSMTSISYHNLYYL*CS--LFFGILYTYF 223
FF I ++F + + +HF F + +YF+ SI H+ +++ + FF I+ +F
Sbjct: 1001 FFSIITHHFFFSIITHHFFFSIITHHYFF-----SIITHHYFFVIITHHYFFSIITHHF 1054
Score = 29.1 bits (62), Expect = 3.1
Identities = 14/56 (25%), Positives = 29/56 (51%)
Frame = +2
Query: 53 FFEYILNYF*LNYLKYHFLFQLCVTYYFYCFSMTSISYHNLYYL*CSLFFGILYTY 220
FF I ++F + + +HF F + +YF+ + I++H + + FF + T+
Sbjct: 974 FFSIITHHFFFSIITHHFFFSIITHHYFF----SIITHHFFFSIITHHFFFSIITH 1025
>SB_24400| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 813
Score = 29.5 bits (63), Expect = 2.3
Identities = 20/59 (33%), Positives = 31/59 (52%)
Frame = -2
Query: 305 MLNNNVKLVCNNFPNCYFIDYFGSSYNKNKYIICQKINYIIDSIDYDTKYLSLKNNKNS 129
++NNN NN + + SS N K+ C K N +++ID DT + K+NKN+
Sbjct: 654 VINNNNDNSNNNNNSSSNNNNNSSSNNNVKFCRCIKNNNDMNNIDTDTINNNSKSNKNN 712
>SB_21701| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1906
Score = 29.1 bits (62), Expect = 3.1
Identities = 24/89 (26%), Positives = 39/89 (43%), Gaps = 1/89 (1%)
Frame = -2
Query: 332 NYNKSLNVSMLNNNVKLVCNNFPNCYFIDYFGSSYNKNKYIICQKINYIIDSIDYDTKYL 153
N N + +++ NNN + N N I+ SS N N I + II++
Sbjct: 1749 NCNNNNSINNRNNNNSINNRNNTNNNSINNNNSSINNNNSSINNNNSSIINNNSSINNNN 1808
Query: 152 SLKNNKNST-LHTIEIKNDTLGNLTKNNS 69
S NN NS+ ++ N+ ++ NNS
Sbjct: 1809 SSINNNNSSIINNNSSNNNNNSSINNNNS 1837
>SB_28794| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 167
Score = 28.7 bits (61), Expect = 4.1
Identities = 11/45 (24%), Positives = 20/45 (44%)
Frame = +2
Query: 89 YLKYHFLFQLCVTYYFYCFSMTSISYHNLYYL*CSLFFGILYTYF 223
Y Y++ + YY+Y + YH+ YY ++ Y Y+
Sbjct: 105 YYYYYYYYYYYYYYYYYYYYYYYYYYHHYYYYYYYYYYYYYYYYY 149
Score = 28.3 bits (60), Expect = 5.4
Identities = 12/57 (21%), Positives = 24/57 (42%)
Frame = +2
Query: 53 FFEYILNYF*LNYLKYHFLFQLCVTYYFYCFSMTSISYHNLYYL*CSLFFGILYTYF 223
++ Y Y+ Y Y++ + YY+Y + Y+ YY ++ Y Y+
Sbjct: 108 YYYYYYYYYYYYYYYYYYYYYYYHHYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYY 164
Score = 27.5 bits (58), Expect = 9.4
Identities = 12/54 (22%), Positives = 22/54 (40%)
Frame = +2
Query: 62 YILNYF*LNYLKYHFLFQLCVTYYFYCFSMTSISYHNLYYL*CSLFFGILYTYF 223
Y Y+ Y Y++ + YY+Y + Y+ YY ++ Y Y+
Sbjct: 103 YYYYYYYYYYYYYYYYYYYYYYYYYYYYHHYYYYYYYYYYYYYYYYYYYYYYYY 156
>SB_22639| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 956
Score = 27.9 bits (59), Expect = 7.1
Identities = 32/120 (26%), Positives = 54/120 (45%), Gaps = 4/120 (3%)
Frame = -2
Query: 443 KLVIGVGENDTNPFKLLIELSATLKRLYEVTVIVLRINYNKSLNVSMLNNNVKLVCNNFP 264
KL + E N + L E+S T+K E T I +R + + + +N +LVC
Sbjct: 296 KLKVKEAEQLKN-MRYLEEMSCTMKTSAEDTKIKVRQAAERLIEF-IEQSNRELVCQLDR 353
Query: 263 NCYFIDYFGSSYNKNKYIICQKIN---YIIDSIDYDTKYLSLKNNKNSTLHTIE-IKNDT 96
+ G+ ++ + ++ Q + YI +DY + YL + NNK E I +DT
Sbjct: 354 E---VSMVGTKRDEQESLLHQTRSASEYIARLVDYGSAYLIMSNNKTVQTRCEELITSDT 410
>SB_41436| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 151
Score = 27.5 bits (58), Expect = 9.4
Identities = 26/110 (23%), Positives = 47/110 (42%)
Frame = -2
Query: 332 NYNKSLNVSMLNNNVKLVCNNFPNCYFIDYFGSSYNKNKYIICQKINYIIDSIDYDTKYL 153
N+N N++ NNN ++ NN + S N K+ QK + ++I+ +++
Sbjct: 23 NHNNGHNITNNNNNNNIIINN-------NNDNSKNNIKKHKAYQKHGHYQNNININSEIK 75
Query: 152 SLKNNKNSTLHTIEIKNDTLGNLTKNNSRYTQRTILDYFKKINIQTPNCT 3
K++ N+ + I ND N K++ + D K I T T
Sbjct: 76 DTKDSINNNNNI--INNDNDNNNHKHSHLHNNNNNNDDEKTTTITTARIT 123
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,197,188
Number of Sequences: 59808
Number of extensions: 246584
Number of successful extensions: 918
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 692
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 843
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1548368000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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