Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0309
(624 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF000265-7|AAB52941.1| 893|Caenorhabditis elegans Hypothetical ... 31 0.51
Z93339-1|CAB07544.1| 2105|Caenorhabditis elegans Hypothetical pr... 29 2.0
Z70203-7|CAA94110.1| 2105|Caenorhabditis elegans Hypothetical pr... 29 2.0
AL023825-2|CAA19443.1| 2105|Caenorhabditis elegans Hypothetical ... 29 2.0
AC006722-1|AAK68420.1| 401|Caenorhabditis elegans Hypothetical ... 29 2.0
AC006645-6|AAF39847.1| 462|Caenorhabditis elegans Hypothetical ... 29 2.0
Z71186-3|CAA94914.1| 222|Caenorhabditis elegans Hypothetical pr... 29 2.7
U97408-1|AAB93344.2| 360|Caenorhabditis elegans Trypsin-like pr... 28 4.7
AF039716-7|AAB96735.3| 617|Caenorhabditis elegans Sodium:neurot... 28 4.7
AC087081-6|AAG37976.1| 301|Caenorhabditis elegans Hypothetical ... 28 4.7
U80845-1|AAK39181.1| 1217|Caenorhabditis elegans Prion-like-(q/n... 28 6.2
Z71264-2|CAA95830.1| 1202|Caenorhabditis elegans Hypothetical pr... 27 8.2
AF100305-8|AAC68919.1| 179|Caenorhabditis elegans Hypothetical ... 27 8.2
AF099915-1|AAC68771.1| 460|Caenorhabditis elegans Hypothetical ... 27 8.2
>AF000265-7|AAB52941.1| 893|Caenorhabditis elegans Hypothetical
protein C18E3.3 protein.
Length = 893
Score = 31.5 bits (68), Expect = 0.51
Identities = 25/103 (24%), Positives = 45/103 (43%), Gaps = 7/103 (6%)
Frame = -2
Query: 293 NVKLVCNNFPNCYFIDYFGSSYNKNKYIICQKINYIIDSIDYDTKYLSLKNNKNST---- 126
+V V N+F F DY+ + ++ + + K+N + +D + Y LK +
Sbjct: 690 DVGTVKNDFKRKLFGDYY-RDWMRSGHFMRHKVNSVCSQLDANCPYFILKEETRDSPALM 748
Query: 125 --LHTIEIKNDTLGNLTKNNS-RYTQRTILDYFKKINIQTPNC 6
+ + K L L+K R R +DYF +++ TP C
Sbjct: 749 LQIEELRDKPIPLELLSKMVCIRMNARFFIDYFDQVSCLTPAC 791
>Z93339-1|CAB07544.1| 2105|Caenorhabditis elegans Hypothetical protein
Y16B4A.2 protein.
Length = 2105
Score = 29.5 bits (63), Expect = 2.0
Identities = 33/157 (21%), Positives = 65/157 (41%), Gaps = 9/157 (5%)
Frame = -2
Query: 458 LNKDD---KLVIGVGENDTNPFKLLIELSATLKRLYEVTVIVLRI---NYNKSLNVSML- 300
LN+DD L I F + + +E+ ++ RI Y K N+ +L
Sbjct: 786 LNRDDVRNALHIPTTVQQWQSFNQTVNAQLYNRSYFELDAVLNRILSSYYYKQNNMKILI 845
Query: 299 -NNNVKLVCNNFPNCYFIDYFGSSYNKNKYIICQKINYIIDSIDYDTKYLSLKNNKNSTL 123
N +V +VCN+ + + I+ S+ Q NY++ +Y + +S L
Sbjct: 846 YNGDVDMVCNHLGDQWLIEQVASNAGLKTVSPRQPWNYVMAGENYLPQLAGYVKVFDSNL 905
Query: 122 HTIEIKNDTLGNLT-KNNSRYTQRTILDYFKKINIQT 15
+ + +K G+L ++ + I ++ +N+ T
Sbjct: 906 NLVTVKGS--GHLVPQDRPGPALQMIFNFISGVNLNT 940
>Z70203-7|CAA94110.1| 2105|Caenorhabditis elegans Hypothetical protein
Y16B4A.2 protein.
Length = 2105
Score = 29.5 bits (63), Expect = 2.0
Identities = 33/157 (21%), Positives = 65/157 (41%), Gaps = 9/157 (5%)
Frame = -2
Query: 458 LNKDD---KLVIGVGENDTNPFKLLIELSATLKRLYEVTVIVLRI---NYNKSLNVSML- 300
LN+DD L I F + + +E+ ++ RI Y K N+ +L
Sbjct: 786 LNRDDVRNALHIPTTVQQWQSFNQTVNAQLYNRSYFELDAVLNRILSSYYYKQNNMKILI 845
Query: 299 -NNNVKLVCNNFPNCYFIDYFGSSYNKNKYIICQKINYIIDSIDYDTKYLSLKNNKNSTL 123
N +V +VCN+ + + I+ S+ Q NY++ +Y + +S L
Sbjct: 846 YNGDVDMVCNHLGDQWLIEQVASNAGLKTVSPRQPWNYVMAGENYLPQLAGYVKVFDSNL 905
Query: 122 HTIEIKNDTLGNLT-KNNSRYTQRTILDYFKKINIQT 15
+ + +K G+L ++ + I ++ +N+ T
Sbjct: 906 NLVTVKGS--GHLVPQDRPGPALQMIFNFISGVNLNT 940
>AL023825-2|CAA19443.1| 2105|Caenorhabditis elegans Hypothetical
protein Y16B4A.2 protein.
Length = 2105
Score = 29.5 bits (63), Expect = 2.0
Identities = 33/157 (21%), Positives = 65/157 (41%), Gaps = 9/157 (5%)
Frame = -2
Query: 458 LNKDD---KLVIGVGENDTNPFKLLIELSATLKRLYEVTVIVLRI---NYNKSLNVSML- 300
LN+DD L I F + + +E+ ++ RI Y K N+ +L
Sbjct: 786 LNRDDVRNALHIPTTVQQWQSFNQTVNAQLYNRSYFELDAVLNRILSSYYYKQNNMKILI 845
Query: 299 -NNNVKLVCNNFPNCYFIDYFGSSYNKNKYIICQKINYIIDSIDYDTKYLSLKNNKNSTL 123
N +V +VCN+ + + I+ S+ Q NY++ +Y + +S L
Sbjct: 846 YNGDVDMVCNHLGDQWLIEQVASNAGLKTVSPRQPWNYVMAGENYLPQLAGYVKVFDSNL 905
Query: 122 HTIEIKNDTLGNLT-KNNSRYTQRTILDYFKKINIQT 15
+ + +K G+L ++ + I ++ +N+ T
Sbjct: 906 NLVTVKGS--GHLVPQDRPGPALQMIFNFISGVNLNT 940
>AC006722-1|AAK68420.1| 401|Caenorhabditis elegans Hypothetical
protein Y19D10A.7 protein.
Length = 401
Score = 29.5 bits (63), Expect = 2.0
Identities = 18/43 (41%), Positives = 21/43 (48%)
Frame = -2
Query: 338 RINYNKSLNVSMLNNNVKLVCNNFPNCYFIDYFGSSYNKNKYI 210
RI N L MLNNN ++ NF NC I + Y K K I
Sbjct: 317 RIYTNSLLTAIMLNNNSDILSPNFKNCDLI-HAQFKYLKTKSI 358
>AC006645-6|AAF39847.1| 462|Caenorhabditis elegans Hypothetical
protein F56A4.9 protein.
Length = 462
Score = 29.5 bits (63), Expect = 2.0
Identities = 18/43 (41%), Positives = 21/43 (48%)
Frame = -2
Query: 338 RINYNKSLNVSMLNNNVKLVCNNFPNCYFIDYFGSSYNKNKYI 210
RI N L MLNNN ++ NF NC I + Y K K I
Sbjct: 362 RIYTNSLLTAIMLNNNSDILSPNFKNCDLI-HAQFKYLKTKSI 403
>Z71186-3|CAA94914.1| 222|Caenorhabditis elegans Hypothetical
protein F23D12.4 protein.
Length = 222
Score = 29.1 bits (62), Expect = 2.7
Identities = 20/85 (23%), Positives = 42/85 (49%), Gaps = 3/85 (3%)
Frame = -2
Query: 269 FPNCYFIDYFGSSYNKNKYII---CQKINYIIDSIDYDTKYLSLKNNKNSTLHTIEIKND 99
FP+C + +G+ KY+I + I + +D + ++ + + ++ ++IK D
Sbjct: 119 FPSCCAKNTYGTRVETVKYLIKYFSKTFKMISMELTFDKQPDAVILDIINLVNHLKIKMD 178
Query: 98 TLGNLTKNNSRYTQRTILDYFKKIN 24
TL KNNS + I+D +++
Sbjct: 179 TLAVAGKNNSDEVFKCIIDEVSRVS 203
>U97408-1|AAB93344.2| 360|Caenorhabditis elegans Trypsin-like
protease protein 6 protein.
Length = 360
Score = 28.3 bits (60), Expect = 4.7
Identities = 16/55 (29%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Frame = -2
Query: 398 LLIELSATLKRLYEVTVIVLRINYNKSLNVSML-NNNVKLVCNNFPNCYFIDYFG 237
++IELS ++ E+ + + ++KS+ + + NNN+ +N PN + +D FG
Sbjct: 170 MIIELSEDVEYSSELKPVCVAGKFHKSVFIKLFNNNNLGSTDDNAPNSH-LDLFG 223
>AF039716-7|AAB96735.3| 617|Caenorhabditis elegans
Sodium:neurotransmitter symporterfamily protein 1
protein.
Length = 617
Score = 28.3 bits (60), Expect = 4.7
Identities = 14/49 (28%), Positives = 21/49 (42%), Gaps = 2/49 (4%)
Frame = +2
Query: 83 LNYLKYHFLF--QLCVTYYFYCFSMTSISYHNLYYL*CSLFFGILYTYF 223
+ Y +F+ +L T +FYC HN+ C FG + YF
Sbjct: 448 IKYCTIYFILTAELFATAWFYCAHKLGKDLHNMMRSRCCSCFGHFFLYF 496
>AC087081-6|AAG37976.1| 301|Caenorhabditis elegans Hypothetical
protein Y82E9BL.11 protein.
Length = 301
Score = 28.3 bits (60), Expect = 4.7
Identities = 18/63 (28%), Positives = 33/63 (52%)
Frame = -2
Query: 209 ICQKINYIIDSIDYDTKYLSLKNNKNSTLHTIEIKNDTLGNLTKNNSRYTQRTILDYFKK 30
+C+ + +D+I ++ +SL +KN H +E++ D TK S T+L+Y +K
Sbjct: 30 VCRNLRTAVDNIGFNFDKISLTFSKN---HKVELELDKF--QTKYYSAIDGSTVLNYNEK 84
Query: 29 INI 21
I
Sbjct: 85 EKI 87
>U80845-1|AAK39181.1| 1217|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 15
protein.
Length = 1217
Score = 27.9 bits (59), Expect = 6.2
Identities = 22/80 (27%), Positives = 40/80 (50%), Gaps = 9/80 (11%)
Frame = -2
Query: 452 KDDKLVIGVGENDTNPFKLLIELSATLKRLYEVTVIVLRINYNKSL--NVSMLNNNVK-- 285
K D +++ EN ++ +S TLK + V ++ R+ N L NV + +N+K
Sbjct: 278 KYDVIIVDACENKKT--NVMCPVSETLK-IKTVQLLKKRLTLNGILAVNVFVTQDNIKSE 334
Query: 284 -----LVCNNFPNCYFIDYF 240
L N F +C++++YF
Sbjct: 335 KEIFELFSNEFNSCFYLEYF 354
>Z71264-2|CAA95830.1| 1202|Caenorhabditis elegans Hypothetical protein
K07G5.3 protein.
Length = 1202
Score = 27.5 bits (58), Expect = 8.2
Identities = 10/17 (58%), Positives = 15/17 (88%)
Frame = -2
Query: 374 LKRLYEVTVIVLRINYN 324
LK YE+TVI++R+NY+
Sbjct: 1135 LKEGYELTVIIIRVNYS 1151
>AF100305-8|AAC68919.1| 179|Caenorhabditis elegans Hypothetical
protein W04B5.6 protein.
Length = 179
Score = 27.5 bits (58), Expect = 8.2
Identities = 14/46 (30%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Frame = +1
Query: 7 QLGVCIFIFLK*SSIVL*VYLELFLVKLPKVSFFISIVC--NVLFL 138
+L CIF+F++ S ++ ++ E+ +K+ IS +C +VLF+
Sbjct: 75 ELAYCIFVFVRISIYLVTIFSEVVFLKMGSDDAPISFLCFTSVLFV 120
>AF099915-1|AAC68771.1| 460|Caenorhabditis elegans Hypothetical
protein E02H9.6 protein.
Length = 460
Score = 27.5 bits (58), Expect = 8.2
Identities = 14/46 (30%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Frame = +1
Query: 7 QLGVCIFIFLK*SSIVL*VYLELFLVKLPKVSFFISIVC--NVLFL 138
+L CIF+F++ S ++ ++ E+ +K+ IS +C +VLF+
Sbjct: 75 ELAYCIFVFVRISIYLVTIFSEVVFLKMGSDDAPISFLCFTSVLFV 120
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,209,156
Number of Sequences: 27780
Number of extensions: 208963
Number of successful extensions: 652
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 637
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 651
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1363963182
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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