Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0309
         (624 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g13810.1 68416.m01744 zinc finger (C2H2 type) family protein ...    26   1.4  
At5g48310.1 68418.m05968 expressed protein                             29   2.5  
At4g21150.1 68417.m03057 ribophorin II (RPN2) family protein con...    28   4.4  
At1g03150.1 68414.m00292 GCN5-related N-acetyltransferase (GNAT)...    28   4.4  
At3g44800.1 68416.m04826 meprin and TRAF homology domain-contain...    27   7.7  

>At3g13810.1 68416.m01744 zinc finger (C2H2 type) family protein
           similar to finger protein pcp1 GB:S48856 from [Solanum
           tuberosum]  contains Pfam domain, PF00096: Zinc finger,
           C2H2 type
          Length = 513

 Score = 25.8 bits (54), Expect(2) = 1.4
 Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
 Frame = -2

Query: 188 IIDSIDYDTKY--LSLKNNKNSTLHTIEIKNDTLGN 87
           II+S+ +DT     +  NN N+ LHT  +K +   N
Sbjct: 282 IINSLHFDTNNGNTNNSNNSNNHLHTFPMKKEQQSN 317



 Score = 22.6 bits (46), Expect(2) = 1.4
 Identities = 17/62 (27%), Positives = 29/62 (46%)
 Frame = -2

Query: 473 CENLNLNKDDKLVIGVGENDTNPFKLLIELSATLKRLYEVTVIVLRINYNKSLNVSMLNN 294
           CE L      ++VI   +N+  P  LLI  SA+    +  T   + ++ + S   S  N+
Sbjct: 224 CEALAEETAREVVIPQNQNNNQPNPLLIHQSASHPHHHHQTQPTINVSSSSS---SSHNH 280

Query: 293 NV 288
           N+
Sbjct: 281 NI 282


>At5g48310.1 68418.m05968 expressed protein
          Length = 1156

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = -2

Query: 221 NKYIICQKINYIIDSIDYDTKYLSLKN 141
           ++Y+ C    +++DS+   T YL +KN
Sbjct: 709 DEYVSCNSEGFLLDSVTISTAYLKMKN 735


>At4g21150.1 68417.m03057 ribophorin II (RPN2) family protein
           contains Pfam domain PF05817: Ribophorin II (RPN2)
          Length = 691

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 25/100 (25%), Positives = 46/100 (46%), Gaps = 2/100 (2%)
 Frame = -2

Query: 326 NKSLNVSMLNNNVKLVCNNFPNCYFIDYFGSSYNKNKYIICQKINYIIDSIDYDTKYLSL 147
           +KS++ S++NN  +L  +     YF+D F  +++  KY    KI  ++D   ++  Y++ 
Sbjct: 354 SKSVDSSVINNQ-ELKFDADSATYFLDSFPKNFDIGKYTFVFKI--VLDESAHEKVYITE 410

Query: 146 KNNKNSTLHT--IEIKNDTLGNLTKNNSRYTQRTILDYFK 33
              K     T  I I+N  +  L  +      +  LD  K
Sbjct: 411 AQTKVPIAATGAISIENAEIAVLDSDIGSVESQKKLDLTK 450


>At1g03150.1 68414.m00292 GCN5-related N-acetyltransferase (GNAT)
           family protein similar to SP|P07347 N-terminal
           acetyltransferase complex ARD1 subunit (Arrest-defective
           protein 1) {Saccharomyces cerevisiae}; contains Pfam
           profile PF00583: acetyltransferase, GNAT family
          Length = 174

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 14/58 (24%), Positives = 26/58 (44%)
 Frame = -2

Query: 356 VTVIVLRINYNKSLNVSMLNNNVKLVCNNFPNCYFIDYFGSSYNKNKYIICQKINYII 183
           VT + +   Y +      L N ++ + +     YF+D F  + N     + +K+ YII
Sbjct: 72  VTAVTVSPEYRRQQLAKKLMNLLEDISDKIDKAYFVDLFVRASNTPAIKMYEKLGYII 129


>At3g44800.1 68416.m04826 meprin and TRAF homology domain-containing
           protein / MATH domain-containing protein
          Length = 564

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 23/89 (25%), Positives = 40/89 (44%), Gaps = 6/89 (6%)
 Frame = -2

Query: 494 SEEVFKCCENLNLNKDDKLVIGVGENDTNPFKLLIELSATLKRLYE---VTVIVLRINYN 324
           S+EV +  + + LN D      +   D N F +L     ++KR++E      +  R N N
Sbjct: 387 SQEVTQPLKRIRLNDDGAASTHLQTIDVNGFLVLASQVESVKRIFESHPEMTLTFRAN-N 445

Query: 323 KSLNVSMLN---NNVKLVCNNFPNCYFID 246
           + L  S +N   N ++ +C +  N    D
Sbjct: 446 QQLRTSCINVLLNLIETMCMSPQNLSIAD 474


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,973,417
Number of Sequences: 28952
Number of extensions: 171004
Number of successful extensions: 448
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 444
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 448
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1265787216
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)