Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0308
         (527 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g09490.1 68418.m01098 40S ribosomal protein S15 (RPS15B) ribo...   222   1e-58
At5g09510.1 68418.m01100 40S ribosomal protein S15 (RPS15D) ribo...   222   1e-58
At1g04270.1 68414.m00418 40S ribosomal protein S15 (RPS15A) Stro...   222   1e-58
At5g09500.1 68418.m01099 40S ribosomal protein S15 (RPS15C) ribo...   216   7e-57
At5g43640.1 68418.m05334 40S ribosomal protein S15 (RPS15E)           215   2e-56
At5g63070.1 68418.m07914 40S ribosomal protein S15, putative          165   2e-41
At1g33850.1 68414.m04194 40S ribosomal protein S15, putative sim...    66   1e-11
At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondria...    47   7e-06
At3g22380.1 68416.m02825 expressed protein                             29   1.9  
At5g17370.1 68418.m02036 WD-40 repeat family protein contains 1 ...    29   2.6  
At3g13090.1 68416.m01639 ABC transporter, putative similar to MR...    27   7.8  
At3g09270.1 68416.m01101 glutathione S-transferase, putative sim...    27   7.8  

>At5g09490.1 68418.m01098 40S ribosomal protein S15 (RPS15B)
           ribosomal protein S15 - Arabidopsis thaliana,
           EMBL:Z23161
          Length = 152

 Score =  222 bits (543), Expect = 1e-58
 Identities = 98/140 (70%), Positives = 118/140 (84%)
 Frame = +3

Query: 9   LKKKRIFRKFTYRGVDLDQLLDMPNEQLMELMHXXXXXXXXXGLKRKPMALVKKLRRAKK 188
           L KKR F+KF+++GVDLD LLDMP + L+EL           GL RKPMAL+KKLR+AK 
Sbjct: 13  LAKKRTFKKFSFKGVDLDALLDMPTDDLVELFPSRIRRRMSRGLTRKPMALIKKLRKAKL 72

Query: 189 EAPPNEKPEIVKTHLRNMIIVPEMVGSIVGIYNGKTFNQVEIKPEMIGHYLGEFSVTYKP 368
           +AP  EKPE+V+THLRNM+I+PEM+GSI+G+YNGKTFNQ+EIKPEMIGHYL EFS+TYKP
Sbjct: 73  DAPAGEKPEVVRTHLRNMVIMPEMIGSIIGVYNGKTFNQIEIKPEMIGHYLAEFSITYKP 132

Query: 369 VKHGRPGIGATHSSRFIPLK 428
           V+HG+PG GATHSSRFIPLK
Sbjct: 133 VRHGKPGHGATHSSRFIPLK 152


>At5g09510.1 68418.m01100 40S ribosomal protein S15 (RPS15D)
           ribosomal protein S15 - Arabidopsis thaliana,
           EMBL:Z23161
          Length = 152

 Score =  222 bits (542), Expect = 1e-58
 Identities = 100/138 (72%), Positives = 116/138 (84%)
 Frame = +3

Query: 15  KKRIFRKFTYRGVDLDQLLDMPNEQLMELMHXXXXXXXXXGLKRKPMALVKKLRRAKKEA 194
           KKR F+KF ++GVDLD LLDM  + L++L           GL RKPMAL+KKLR+AK+EA
Sbjct: 15  KKRTFKKFAFKGVDLDALLDMSTDDLVKLFSSRIRRRFSRGLTRKPMALIKKLRKAKREA 74

Query: 195 PPNEKPEIVKTHLRNMIIVPEMVGSIVGIYNGKTFNQVEIKPEMIGHYLGEFSVTYKPVK 374
           P  EKPE V+THLRNMIIVPEM+GSI+G+YNGKTFNQVEIKPEMIGHYL EFS++YKPVK
Sbjct: 75  PAGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVK 134

Query: 375 HGRPGIGATHSSRFIPLK 428
           HGRPG+GATHSSRFIPLK
Sbjct: 135 HGRPGVGATHSSRFIPLK 152


>At1g04270.1 68414.m00418 40S ribosomal protein S15 (RPS15A) Strong
           similarity to Oryza 40S ribosomal protein S15. ESTs
           gb|R29788,gb|ATTS0365 come from this gene
          Length = 152

 Score =  222 bits (542), Expect = 1e-58
 Identities = 100/138 (72%), Positives = 116/138 (84%)
 Frame = +3

Query: 15  KKRIFRKFTYRGVDLDQLLDMPNEQLMELMHXXXXXXXXXGLKRKPMALVKKLRRAKKEA 194
           KKR F+KF ++GVDLD LLDM  + L++L           GL RKPMAL+KKLR+AK+EA
Sbjct: 15  KKRTFKKFAFKGVDLDALLDMSTDDLVKLFSSRIRRRFSRGLTRKPMALIKKLRKAKREA 74

Query: 195 PPNEKPEIVKTHLRNMIIVPEMVGSIVGIYNGKTFNQVEIKPEMIGHYLGEFSVTYKPVK 374
           P  EKPE V+THLRNMIIVPEM+GSI+G+YNGKTFNQVEIKPEMIGHYL EFS++YKPVK
Sbjct: 75  PQGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVK 134

Query: 375 HGRPGIGATHSSRFIPLK 428
           HGRPG+GATHSSRFIPLK
Sbjct: 135 HGRPGVGATHSSRFIPLK 152


>At5g09500.1 68418.m01099 40S ribosomal protein S15 (RPS15C)
           ribosomal protein S15 - Arabidopsis thaliana,
           EMBL:Z23161
          Length = 150

 Score =  216 bits (528), Expect = 7e-57
 Identities = 98/138 (71%), Positives = 115/138 (83%)
 Frame = +3

Query: 15  KKRIFRKFTYRGVDLDQLLDMPNEQLMELMHXXXXXXXXXGLKRKPMALVKKLRRAKKEA 194
           KKR F+KF++RGVDLD LLDM  + L++L           GL RKPMAL+KKLR+AK EA
Sbjct: 13  KKRTFKKFSFRGVDLDALLDMSTDDLVKLFPSRIRRRFSRGLTRKPMALIKKLRKAKIEA 72

Query: 195 PPNEKPEIVKTHLRNMIIVPEMVGSIVGIYNGKTFNQVEIKPEMIGHYLGEFSVTYKPVK 374
           P  EKP  V+THLRNMIIVPEM+GS++G+YNGKTFNQVEIKPEMIGHYL EFS++YKPVK
Sbjct: 73  PAGEKPAAVRTHLRNMIIVPEMIGSVIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVK 132

Query: 375 HGRPGIGATHSSRFIPLK 428
           HGRPG+GAT+SSRFIPLK
Sbjct: 133 HGRPGVGATNSSRFIPLK 150


>At5g43640.1 68418.m05334 40S ribosomal protein S15 (RPS15E) 
          Length = 149

 Score =  215 bits (524), Expect = 2e-56
 Identities = 99/138 (71%), Positives = 114/138 (82%)
 Frame = +3

Query: 15  KKRIFRKFTYRGVDLDQLLDMPNEQLMELMHXXXXXXXXXGLKRKPMALVKKLRRAKKEA 194
           KKR F+KF++RGVDLD LLDM  E L++            GL RKPMAL+KKLR+AK EA
Sbjct: 12  KKRTFKKFSFRGVDLDALLDMSIEDLVKHFSSRIRRRFSRGLTRKPMALIKKLRKAKMEA 71

Query: 195 PPNEKPEIVKTHLRNMIIVPEMVGSIVGIYNGKTFNQVEIKPEMIGHYLGEFSVTYKPVK 374
           P  EKP  V+THLRNMIIVPEM+GSI+G+YNGKTFNQVEIKPEMIGHYL EFS++YKPVK
Sbjct: 72  PAGEKPASVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVK 131

Query: 375 HGRPGIGATHSSRFIPLK 428
           HGRPG+GAT+SSRFIPLK
Sbjct: 132 HGRPGVGATNSSRFIPLK 149


>At5g63070.1 68418.m07914 40S ribosomal protein S15, putative
          Length = 160

 Score =  165 bits (401), Expect = 2e-41
 Identities = 82/144 (56%), Positives = 103/144 (71%), Gaps = 6/144 (4%)
 Frame = +3

Query: 15  KKRIFRKFTYRGVDLDQLLDMPNEQLMELMHXXXXXXXXXGLKRKPMALVKKLRRAKKEA 194
           KKR F+KF++RG ++D LL M N  L +L +         GLK++P+ L+KKLRRAKKEA
Sbjct: 17  KKRTFKKFSFRGFNVDALLKMSNVDLAKLFNARVRRRFYRGLKKQPLILIKKLRRAKKEA 76

Query: 195 PPNEK--PEIVKTHLRNMIIVPEMVGSIVGIYNGKTFNQVEIKPEMIGHYLGEFSVTYKP 368
               K  PE+VKTHLRNMIIVPEM+GS+VG++NGK FN++ IKPEMIGHYL EFS+T K 
Sbjct: 77  SDENKMKPEVVKTHLRNMIIVPEMIGSVVGVHNGKKFNEIVIKPEMIGHYLAEFSMTCKK 136

Query: 369 VKHGRPGIGA----THSSRFIPLK 428
           V H RP I        S+RFIPL+
Sbjct: 137 VNHHRPRICGCCCFRRSTRFIPLR 160


>At1g33850.1 68414.m04194 40S ribosomal protein S15, putative
           similar to SP|Q08112 40S ribosomal protein S15
           {Arabidopsis thaliana}
          Length = 70

 Score = 66.1 bits (154), Expect = 1e-11
 Identities = 32/58 (55%), Positives = 39/58 (67%)
 Frame = +3

Query: 15  KKRIFRKFTYRGVDLDQLLDMPNEQLMELMHXXXXXXXXXGLKRKPMALVKKLRRAKK 188
           KKRIF+KF++RGVDLD LLDM  E L++            G  RKPMAL+KKLR+A K
Sbjct: 12  KKRIFKKFSFRGVDLDALLDMSTEDLVKHFSSRIRRRFSRGFTRKPMALIKKLRKAVK 69


>At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondrial
           (RPS19)
          Length = 212

 Score = 47.2 bits (107), Expect = 7e-06
 Identities = 23/50 (46%), Positives = 29/50 (58%)
 Frame = +3

Query: 234 RNMIIVPEMVGSIVGIYNGKTFNQVEIKPEMIGHYLGEFSVTYKPVKHGR 383
           R   I+PE V S V IYNGKT  + +I    +GH  GEF+ T K  KH +
Sbjct: 161 RRSTILPEYVDSAVRIYNGKTHVRCKITEGKVGHKFGEFAFTRKVKKHAK 210


>At3g22380.1 68416.m02825 expressed protein
          Length = 1550

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
 Frame = +2

Query: 167 EAASRQERGSSE*EARDREDSLEKHDHRSRD---GRFNCRHLQRK 292
           EAA  ++RG S  + RDRE   ++   R RD    R N R  +R+
Sbjct: 43  EAARLRDRGGSNKKDRDRERDRDRERERERDRERDRLNSRSKRRR 87


>At5g17370.1 68418.m02036 WD-40 repeat family protein contains 1
           significant, 2 weak WD-40 repeats (PF00400); similar to
           transducin beta-like 1 protein.(SP:O60907) [Homo
           sapiens]
          Length = 467

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +3

Query: 312 IKPEMIGHYLGEFSVTYKPVKHGRPGIGATHSSR 413
           +KPE+ G Y  E    Y P+K   PG  ++ SSR
Sbjct: 20  MKPELPGFYYDEEKNRYFPIKGPIPGAKSSSSSR 53


>At3g13090.1 68416.m01639 ABC transporter, putative similar to
           MRP-like ABC transporter [Arabidopsis thaliana]
           GI:2316016; contains Pfam profile: PF00005 ABC
           transporter
          Length = 1466

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
 Frame = -1

Query: 119 ARTGMH*FHELLIGHI--KELIEINSPVSELPENTLFL 12
           A TG H F E+L+G +  K +I +   V  LPE  L L
Sbjct: 758 AHTGSHLFKEVLLGLLRHKTVIYVTHQVEFLPEADLIL 795


>At3g09270.1 68416.m01101 glutathione S-transferase, putative
           similar to glutathione transferase GB:CAA71784 [Glycine
           max]
          Length = 224

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 18/65 (27%), Positives = 35/65 (53%), Gaps = 3/65 (4%)
 Frame = +3

Query: 165 KKLRRAKKEA---PPNEKPEIVKTHLRNMIIVPEMVGSIVGIYNGKTFNQVEIKPEMIGH 335
           +K+  A K+A   P +E+ + VK     +  + + +G  +  + G+T   V+I  + IG+
Sbjct: 107 EKVMLAVKKACWGPESEREKEVKEAYEGLKCLEKELGDKL-FFGGETIGFVDIAADFIGY 165

Query: 336 YLGEF 350
           +LG F
Sbjct: 166 WLGIF 170


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,981,229
Number of Sequences: 28952
Number of extensions: 187294
Number of successful extensions: 499
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 490
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 498
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 977150592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)