Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0305
         (710 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A10.01 |ccr1|SPBC365.17|NADPH-cytochrome p450 reductase |S...    27   2.6  
SPBC1703.07 |||ATP citrate synthase subunit 1 |Schizosaccharomyc...    27   2.6  
SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr 1||...    27   3.5  
SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor eIF...    26   6.1  

>SPBC29A10.01 |ccr1|SPBC365.17|NADPH-cytochrome p450 reductase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 678

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 10/15 (66%), Positives = 13/15 (86%)
 Frame = +1

Query: 583 VIILVHSMCNFVYNN 627
           VIIL+ S+C F+YNN
Sbjct: 10  VIILILSLCYFIYNN 24


>SPBC1703.07 |||ATP citrate synthase subunit 1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 615

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 16/41 (39%), Positives = 21/41 (51%)
 Frame = -1

Query: 182 NNYKITKLLNVSRVRRYGKCLQITFSLYNIISHSTRGVREG 60
           +N   +KL     V    K   ++  L NIISH+T GV EG
Sbjct: 164 DNIVASKLYRPGSVAYVSKSGGMSNELNNIISHTTDGVYEG 204


>SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1101

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 15/51 (29%), Positives = 24/51 (47%)
 Frame = -2

Query: 361 ILADACFLKPVSSIDKTKQNKLNKCHLNKNSDEILIS*TYGDCVIFVNNFS 209
           IL   C  + V ++D+  Q+      +NK+    L      D V+F NN+S
Sbjct: 561 ILKFRCDFENVRTMDRFYQSFQKALSMNKSQPSCLSFSKLNDFVVFFNNYS 611


>SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor
           eIF3c|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 918

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 8/13 (61%), Positives = 12/13 (92%)
 Frame = +1

Query: 589 ILVHSMCNFVYNN 627
           IL+HS+C ++YNN
Sbjct: 555 ILIHSLCVYLYNN 567


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,474,925
Number of Sequences: 5004
Number of extensions: 44498
Number of successful extensions: 80
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)