Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0304
(672 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCPJ732.01 |vps5||retromer complex subunit Vps5|Schizosaccharom... 42 1e-04
SPBC1711.11 |||autophagy associated protein |Schizosaccharomyces... 29 0.81
SPAPB1A10.09 |ase1||microtubule-associated protein Ase1 |Schizos... 27 3.3
SPBC2F12.08c |ceg1|pce1|mRNA guanylyltransferase Ceg1|Schizosacc... 27 3.3
SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces... 26 5.7
SPAC10F6.11c |||kinase activator |Schizosaccharomyces pombe|chr ... 26 5.7
SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1 |Schizosacc... 26 5.7
SPCC594.02c |||conserved fungal protein|Schizosaccharomyces pomb... 25 7.5
SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces p... 25 9.9
SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synth... 25 9.9
SPBC13A2.02 |||nucleoporin Nup82|Schizosaccharomyces pombe|chr 2... 25 9.9
>SPCPJ732.01 |vps5||retromer complex subunit
Vps5|Schizosaccharomyces pombe|chr 3|||Manual
Length = 576
Score = 41.5 bits (93), Expect = 1e-04
Identities = 31/91 (34%), Positives = 36/91 (39%), Gaps = 1/91 (1%)
Frame = +2
Query: 101 ETEKKFVAYMVQVN-RETDLADQDPANVERRYTHFLDLYNGLKKEQPTLLNNLSFPRKTV 277
E K Y V E + V+RRY F LY L P + P K V
Sbjct: 214 EITKSHTVYSVSTRLEEHNQPSVSNVTVQRRYNDFAFLYQLLSNNHPGCIIP-PIPEKQV 272
Query: 278 VGNFDANLISTRCAAFESLLDLMSNDSRLRD 370
VG FD I R AA E +L +S LRD
Sbjct: 273 VGRFDDEFIEQRRAALEVMLRKISAHPVLRD 303
>SPBC1711.11 |||autophagy associated protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 390
Score = 28.7 bits (61), Expect = 0.81
Identities = 18/78 (23%), Positives = 34/78 (43%)
Frame = +2
Query: 74 ISSRTVDSSETEKKFVAYMVQVNRETDLADQDPANVERRYTHFLDLYNGLKKEQPTLLNN 253
I + +++ + FV+Y ++ + + + +V RRY F L+N L +
Sbjct: 6 IKNEQIETLRSGDTFVSYEIETESDLPVFEDKKFSVRRRYKDFEMLHNILSHDYNGYAIP 65
Query: 254 LSFPRKTVVGNFDANLIS 307
PRK V +F +S
Sbjct: 66 -PLPRKYTVSSFSGGSLS 82
>SPAPB1A10.09 |ase1||microtubule-associated protein Ase1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 731
Score = 26.6 bits (56), Expect = 3.3
Identities = 35/163 (21%), Positives = 70/163 (42%), Gaps = 3/163 (1%)
Frame = +2
Query: 38 CNKRLKMLRFKIISSRTVDSSETEKKFVAYMVQVNRETDLADQDPANVERRYTHFLDLYN 217
C +R+ +RF + S + D + + K + +NR + + Q A +++ + ++Y+
Sbjct: 86 CQQRIDSIRFLVSSLKLTDDTSSLKIESPLIQCLNRLSMVEGQYMAQYDQKLSTIKEMYH 145
Query: 218 GLKKEQPTLLNNLSFPRKTVVGNFDANLISTRCAAF-ESLLDLMSNDSRLRDCP-AAITF 391
L+ + N L P V+ +F+ + +S AF ESL ++ + D I
Sbjct: 146 KLE----SYCNRLGSP--FVLPDFENSFLSDVSDAFTESLRGRINEAEKEIDARLEVINS 199
Query: 392 FQDVELSEAKRL-INEGKFDQALSILETSFKLLNKVYTDRSRV 517
F++ L L + Q +LE+ N VY + +
Sbjct: 200 FEEEILGLWSELGVEPADVPQYEQLLESHTNRPNDVYVTQELI 242
>SPBC2F12.08c |ceg1|pce1|mRNA guanylyltransferase
Ceg1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 402
Score = 26.6 bits (56), Expect = 3.3
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Frame = +2
Query: 290 DANLISTRCAAFESLLDLMSNDSRLRDCP-AAITFFQDVELSEAKRLINEGKFDQALSI 463
DAN IST + +S+ D +S + L++ P ++ + S KR ++E D A +I
Sbjct: 333 DANHISTVKSVLQSIEDGVSKEDLLKEMPIIREAYYNRKKPSVTKRKLDETSNDDAPAI 391
>SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 967
Score = 25.8 bits (54), Expect = 5.7
Identities = 22/94 (23%), Positives = 45/94 (47%)
Frame = -1
Query: 591 RSTGPANVPSLAPAHATIRQRAQSTTLDLSV*TLFNNLKLVSSMDSAWSNLPSLISLLAS 412
+S+ + +A AH+ R S +L L + NNL+ +S ++A N+ S + ++
Sbjct: 132 QSSAVSEADDMASAHSAHPSRKASRSLRLFESSTSNNLETGNSTNTALHNVSSPLESVSE 191
Query: 411 LNSTSWKNVIAAGQSRSLESLLIKSNSDSNAAQR 310
S S + G L+ ++ S D++ ++R
Sbjct: 192 RLSKSGSP--SVGAQHDLDEVI--SEKDTSLSRR 221
>SPAC10F6.11c |||kinase activator |Schizosaccharomyces pombe|chr
1|||Manual
Length = 481
Score = 25.8 bits (54), Expect = 5.7
Identities = 12/33 (36%), Positives = 15/33 (45%)
Frame = +2
Query: 134 QVNRETDLADQDPANVERRYTHFLDLYNGLKKE 232
Q E Q+ +ER YTHF Y L +E
Sbjct: 353 QTGLEIPQLAQELVQLERHYTHFAKAYTALLQE 385
>SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1072
Score = 25.8 bits (54), Expect = 5.7
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = +3
Query: 525 VLFVGLWHALELVMVH*QGQWNGGHSLHYEDTKQSVI 635
V++VGLW A +++ + Q + HSL D +S++
Sbjct: 537 VVYVGLWSADIIMLTYCQDGISLTHSLKLTDIPRSIV 573
>SPCC594.02c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 489
Score = 25.4 bits (53), Expect = 7.5
Identities = 16/64 (25%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Frame = +2
Query: 428 INEGK--FDQALSILETSFKLLNKVYTDRSRVVLCALCRIVACAGASDGTLAGPVERWAQ 601
IN G+ FD+ LSI E SF + ++ R ++ C G + +A + + +
Sbjct: 34 INRGRQPFDEGLSINEDSFFYRHNIHVPRIVYLIIVACGSFIITGGIEFAIAYGMYKKTE 93
Query: 602 LALR 613
++R
Sbjct: 94 TSVR 97
>SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 749
Score = 25.0 bits (52), Expect = 9.9
Identities = 17/58 (29%), Positives = 30/58 (51%)
Frame = +2
Query: 59 LRFKIISSRTVDSSETEKKFVAYMVQVNRETDLADQDPANVERRYTHFLDLYNGLKKE 232
L ++ + ++++ +KK + +++ V R L P V RRY F LY LKK+
Sbjct: 311 LHYQFLKEASLNTLIKDKKMLKFIITV-RPVHL-HVSPWVVYRRYRGFKTLYYLLKKQ 366
>SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synthase
Ade3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1323
Score = 25.0 bits (52), Expect = 9.9
Identities = 19/65 (29%), Positives = 26/65 (40%), Gaps = 2/65 (3%)
Frame = +2
Query: 437 GKFDQALSILETSFKLLNKVYTD--RSRVVLCALCRIVACAGASDGTLAGPVERWAQLAL 610
G + A + + F ++ TD RV L I AC G S G + G WA L
Sbjct: 1072 GYLEMAYAFYASGFTAVDVHMTDILSGRVHLDDFVGIAACGGFSYGDVLGSGNGWATSIL 1131
Query: 611 RRYEA 625
+A
Sbjct: 1132 LHEDA 1136
>SPBC13A2.02 |||nucleoporin Nup82|Schizosaccharomyces pombe|chr
2|||Manual
Length = 803
Score = 25.0 bits (52), Expect = 9.9
Identities = 9/28 (32%), Positives = 17/28 (60%)
Frame = +2
Query: 38 CNKRLKMLRFKIISSRTVDSSETEKKFV 121
C KR+ + +++ R D S+ EK+F+
Sbjct: 694 CEKRIDQVLQRVMDLRVPDLSDKEKQFI 721
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,929,662
Number of Sequences: 5004
Number of extensions: 63361
Number of successful extensions: 189
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 189
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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