Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0304
(672 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0516 + 3727742-3727936,3729115-3729192,3729292-3729552,372... 31 0.84
06_03_1062 - 27293119-27293313,27293390-27293548,27293877-272941... 31 1.1
02_05_0577 - 30100084-30100251,30100474-30100548,30100631-301007... 31 1.1
07_01_0125 - 944207-945778 30 1.5
08_01_0998 - 10136050-10138356 30 1.9
02_04_0063 - 19372222-19372296,19373474-19373554,19373698-193738... 30 1.9
10_08_0875 + 21212413-21212758,21215931-21217357 29 2.6
03_06_0011 - 30995083-30995108,30995850-30996038,30996063-30998856 29 3.4
11_01_0458 + 3536162-3537794,3537905-3538272 29 4.5
05_07_0224 + 28500745-28500978,28501933-28502332,28502416-285024... 29 4.5
08_02_0138 - 13052183-13052784,13053019-13053337 28 5.9
04_03_0841 - 20230920-20230994,20231084-20231164,20231410-202315... 28 5.9
11_04_0423 - 17498569-17498932,17499217-17499992,17503439-17504617 28 7.8
07_01_0101 - 752935-753223,753311-753408,753674-753764,753844-75... 28 7.8
01_06_1127 - 34699119-34699360,34699446-34699689,34699773-346998... 28 7.8
>02_01_0516 +
3727742-3727936,3729115-3729192,3729292-3729552,
3729921-3730238,3730527-3730685,3730768-3730961,
3731644-3731647
Length = 402
Score = 31.1 bits (67), Expect = 0.84
Identities = 21/83 (25%), Positives = 39/83 (46%)
Frame = +2
Query: 221 LKKEQPTLLNNLSFPRKTVVGNFDANLISTRCAAFESLLDLMSNDSRLRDCPAAITFFQD 400
++KE L+ ++ P+K + +ST+ ESLL + D + TF++
Sbjct: 176 MQKELDYLVGAVANPKKPFAAIVGGSKVSTKIGVIESLLAKV--DVLILGGGMIFTFYKA 233
Query: 401 VELSEAKRLINEGKFDQALSILE 469
+ K L+ E K + A S++E
Sbjct: 234 QGYAVGKSLVEEDKLELATSLIE 256
>06_03_1062 -
27293119-27293313,27293390-27293548,27293877-27294194,
27294535-27294795,27294901-27294978,27295707-27295901
Length = 401
Score = 30.7 bits (66), Expect = 1.1
Identities = 21/83 (25%), Positives = 39/83 (46%)
Frame = +2
Query: 221 LKKEQPTLLNNLSFPRKTVVGNFDANLISTRCAAFESLLDLMSNDSRLRDCPAAITFFQD 400
++KE L+ ++ P+K + +ST+ ESLL + D + TF++
Sbjct: 176 MQKELDYLVGAVANPKKPFAAIVGGSKVSTKIGVIESLLAKV--DILILGGGMIYTFYKA 233
Query: 401 VELSEAKRLINEGKFDQALSILE 469
+ K L+ E K + A S++E
Sbjct: 234 QGYAVGKSLVEEDKLELATSLIE 256
>02_05_0577 -
30100084-30100251,30100474-30100548,30100631-30100755,
30101538-30101609,30102016-30102108,30102333-30102419,
30103049-30103135,30103448-30103522,30104142-30104238
Length = 292
Score = 30.7 bits (66), Expect = 1.1
Identities = 17/63 (26%), Positives = 33/63 (52%)
Frame = -1
Query: 471 VSSMDSAWSNLPSLISLLASLNSTSWKNVIAAGQSRSLESLLIKSNSDSNAAQRVDIKLA 292
++ ++S +NLP L+S SL +T+W+N + +S ++ D N +IK
Sbjct: 21 INRLNSTKTNLPGLVSERESLKNTNWQNKETMKKEQSGIKSDGQNKKDMNLQNLENIKRR 80
Query: 291 SKL 283
+K+
Sbjct: 81 TKM 83
>07_01_0125 - 944207-945778
Length = 523
Score = 30.3 bits (65), Expect = 1.5
Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Frame = +2
Query: 218 GLKKEQPTLLNNLSFPRKTVVGNFDA-NLISTRCAAFESLLDLMSNDSRLRDCPAAITFF 394
G + E ++ L P FD ++I +L++ + ND R+R+ + I F
Sbjct: 183 GRQMEMEHIIKFLLHPETPYSDIFDVLSIIGPAKVGKSTLVEHVCNDERVRNHFSRIIFL 242
Query: 395 QDVELSEAKRLI 430
D +LSE K L+
Sbjct: 243 SDSDLSEQKSLL 254
>08_01_0998 - 10136050-10138356
Length = 768
Score = 29.9 bits (64), Expect = 1.9
Identities = 17/42 (40%), Positives = 26/42 (61%), Gaps = 4/42 (9%)
Frame = -1
Query: 483 NLKLVSSMDSAWSNL----PSLISLLASLNSTSWKNVIAAGQ 370
NLK++ S+D +W+ L PS IS L SL+S + N +G+
Sbjct: 619 NLKILESLDFSWNELSGSIPSSISNLMSLSSLNLSNNHLSGE 660
>02_04_0063 -
19372222-19372296,19373474-19373554,19373698-19373808,
19373901-19374158
Length = 174
Score = 29.9 bits (64), Expect = 1.9
Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
Frame = +2
Query: 44 KRLKMLR--FKIISSRTVDSSETEKKFVAYMVQVNRETDLADQDPANVERRYTHFLDLYN 217
KRL +R +++S T ET +K + +VNR+ ++ E+ Y L+ YN
Sbjct: 79 KRLAFIRQELEVMSDPTRREVETIRKRID---KVNRQLKPLGKNCLKKEKEYKACLEAYN 135
Query: 218 GLKKEQPTLLNNL 256
E+ TL+N L
Sbjct: 136 EKSNEKATLVNRL 148
>10_08_0875 + 21212413-21212758,21215931-21217357
Length = 590
Score = 29.5 bits (63), Expect = 2.6
Identities = 14/40 (35%), Positives = 24/40 (60%)
Frame = +2
Query: 257 SFPRKTVVGNFDANLISTRCAAFESLLDLMSNDSRLRDCP 376
S P++T++GN D + C A E+L+ + S+ + DCP
Sbjct: 434 SSPQETLIGNCDKMV----CIAAETLVSIFSSSACTTDCP 469
>03_06_0011 - 30995083-30995108,30995850-30996038,30996063-30998856
Length = 1002
Score = 29.1 bits (62), Expect = 3.4
Identities = 25/79 (31%), Positives = 38/79 (48%)
Frame = -1
Query: 474 LVSSMDSAWSNLPSLISLLASLNSTSWKNVIAAGQSRSLESLLIKSNSDSNAAQRVDIKL 295
L + S++ L SL L + N+ S G+ RSLE L + SNS S R + L
Sbjct: 549 LEGQIPSSFKELKSLKFLSLAENNLSGTIPSCLGKLRSLEVLDLSSNSLSGKIPRNLVTL 608
Query: 294 ASKLPTTVFLGNDKLLSSV 238
T++ L N+KL ++
Sbjct: 609 T--YLTSLLLNNNKLSGNI 625
>11_01_0458 + 3536162-3537794,3537905-3538272
Length = 666
Score = 28.7 bits (61), Expect = 4.5
Identities = 20/53 (37%), Positives = 30/53 (56%)
Frame = -1
Query: 492 LFNNLKLVSSMDSAWSNLPSLISLLASLNSTSWKNVIAAGQSRSLESLLIKSN 334
L+NNL V + +A +LPSLI + S N+ + I G ++ L SL + SN
Sbjct: 123 LYNNLHGV--IPNAIFSLPSLIQVDLSYNNLHGQLPIDIGNAKQLVSLKLSSN 173
>05_07_0224 +
28500745-28500978,28501933-28502332,28502416-28502480,
28502633-28502692,28502865-28503014,28503386-28503541,
28503648-28503785,28503874-28503947,28504172-28504273,
28505415-28505604,28505756-28505830
Length = 547
Score = 28.7 bits (61), Expect = 4.5
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
Frame = +2
Query: 170 PANVERRYTHFLDLYNGL---KKEQPTLLNNLSFPRKTVVGN 286
P+ V+R F L G+ +K P L N S PR+ +GN
Sbjct: 425 PSGVDRFKRQFAHLEEGVSKGEKSSPQLRQNASLPRERAIGN 466
>08_02_0138 - 13052183-13052784,13053019-13053337
Length = 306
Score = 28.3 bits (60), Expect = 5.9
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = -2
Query: 167 LDQPNPFLDSPVPCRLQISSRSQNYPLSVTK 75
+D+ N + +P+P RLQ++ S YP +T+
Sbjct: 258 IDKLNFTVLAPIPMRLQLADSSVRYPAGITE 288
>04_03_0841 -
20230920-20230994,20231084-20231164,20231410-20231520,
20232050-20232268
Length = 161
Score = 28.3 bits (60), Expect = 5.9
Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
Frame = +2
Query: 41 NKRLKMLRFKIISSRTVDSSETEKKFVAYMVQV-NRETDLADQDPANVERRYTHFLDLYN 217
+KRL +R ++ D + E + + + V NR+ + E+ Y L+ YN
Sbjct: 65 SKRLAFIRQEL--EGMADPTRKEVEVIRKRIDVVNRQLKPLGKTCVKKEKEYKEILEAYN 122
Query: 218 GLKKEQPTLLNNL 256
KE+ L+N L
Sbjct: 123 EKNKEKALLVNRL 135
>11_04_0423 - 17498569-17498932,17499217-17499992,17503439-17504617
Length = 772
Score = 27.9 bits (59), Expect = 7.8
Identities = 30/101 (29%), Positives = 42/101 (41%), Gaps = 10/101 (9%)
Frame = +2
Query: 356 SRLRD-CPAAITFFQDVELSEAKRLINEGKFDQALSILETSFKLLNKVY----TDRSRVV 520
S +RD P IT + + G+F +AL F L+ + T R +V
Sbjct: 625 SMIRDQAPKIITLVEQEAAHNGPYFL--GRFLEALHYYSAIFDSLDATFPAESTARMKVE 682
Query: 521 LCALC----RIVACAGASDGTLAGPVERWAQLAL-RRYEAV 628
C L +VAC GA +ERW +L R +EAV
Sbjct: 683 QCLLAPEIRNVVACEGAERVARHERLERWRRLMEGRGFEAV 723
>07_01_0101 -
752935-753223,753311-753408,753674-753764,753844-753882,
754019-754110,754535-754634,754742-754828,754949-755250,
756036-756242,756319-756405,756978-757058,757257-757365,
758037-758093,758188-758258,758414-758521,758874-758974,
759111-759177,759434-759535,759618-759662,759916-760511,
761956-762065,762165-762280
Length = 984
Score = 27.9 bits (59), Expect = 7.8
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +2
Query: 398 DVELSEAKRLINEGKFDQALSILE 469
D LS +NEG++DQA+SI +
Sbjct: 265 DFRLSRGIAQVNEGRYDQAISIFD 288
>01_06_1127 - 34699119-34699360,34699446-34699689,34699773-34699844,
34700123-34700218,34700322-34700438,34700520-34700676,
34700770-34700867,34700940-34701098,34701169-34701339,
34701402-34701479,34701548-34701667,34701968-34702085,
34702216-34702346,34702452-34702528,34702858-34702969,
34703057-34703239,34703416-34703517,34703617-34703718,
34703817-34703912,34704481-34704558,34704652-34704744,
34704817-34704938,34705035-34705116,34705204-34705278,
34705385-34705645,34705730-34705854,34705956-34706031,
34706128-34706277,34706359-34706454,34706707-34706814,
34706956-34707056,34707727-34707814,34707894-34708006,
34708278-34708383,34709143-34709247,34709356-34709427,
34709931-34709971,34710067-34710175,34710252-34710317,
34710404-34710540,34710788-34710890,34711416-34711535,
34711707-34711820,34711923-34712008,34712088-34712170,
34713283-34713347,34713444-34713621,34713697-34713776,
34714926-34715049,34715140-34715245,34715399-34715561
Length = 1966
Score = 27.9 bits (59), Expect = 7.8
Identities = 23/85 (27%), Positives = 44/85 (51%), Gaps = 3/85 (3%)
Frame = -1
Query: 483 NLKLVSSMDSA--WSNLPSLISLLASLNSTSWKNVIAAGQSRSLESLLIKSNSDSNAAQR 310
N+ ++ +D+A S+ LI+LL L+ + W + ESL +K+ S+ +
Sbjct: 1565 NVLMLKILDNAERTSSFVVLINLLRPLDPSRWPSPTPP------ESLAVKNQKFSDLVVK 1618
Query: 309 VDIKLASKLPTTVF-LGNDKLLSSV 238
IKL L +T++ + D++L S+
Sbjct: 1619 CLIKLTKVLQSTIYEVDLDRILQSI 1643
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,312,034
Number of Sequences: 37544
Number of extensions: 387793
Number of successful extensions: 1090
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1054
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1090
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1703141568
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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