Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0304
(672 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_31221| Best HMM Match : No HMM Matches (HMM E-Value=.) 84 1e-16
SB_5274| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.003
SB_38344| Best HMM Match : PX (HMM E-Value=8.1e-21) 37 0.017
SB_13906| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.64
SB_28454| Best HMM Match : SDA1 (HMM E-Value=1.7) 31 1.1
SB_56522| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.6e-30) 30 1.5
SB_8897| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.0
SB_31091| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.6
SB_11138| Best HMM Match : Yippee (HMM E-Value=6.1) 29 2.6
SB_6572| Best HMM Match : Xan_ur_permease (HMM E-Value=0.17) 29 3.4
SB_18632| Best HMM Match : Nitrophorin (HMM E-Value=0.67) 28 7.9
SB_52058| Best HMM Match : Pneumovirus_M2 (HMM E-Value=9.4) 28 7.9
SB_10987| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.9
>SB_31221| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 335
Score = 83.8 bits (198), Expect = 1e-16
Identities = 56/150 (37%), Positives = 83/150 (55%), Gaps = 2/150 (1%)
Frame = +2
Query: 53 KMLRFKIISSRTVDSSETEKKFVAYMVQVNRETDLADQDPANVERRYTHFLDLYNGLKKE 232
K LRF+IIS+R + ++ +K V+Y V V R TD D D A V+RRY+ F+ LY GL+K
Sbjct: 88 KTLRFEIISTRICEVAK--QKHVSYAVAVMR-TDRVDVDKAVVDRRYSDFVKLYKGLRKL 144
Query: 233 QPTLLNNLSFPRKTVVG--NFDANLISTRCAAFESLLDLMSNDSRLRDCPAAITFFQDVE 406
P L++ + P K V+G NF+ ++ R AFE+ L + + + FF +
Sbjct: 145 FPRLMSKVQLPSK-VIGSKNFNIEVLQLRSHAFETFLQYIYSQDEICTSEPFKEFFYLPD 203
Query: 407 LSEAKRLINEGKFDQALSILETSFKLLNKV 496
L +A I GKF ALS+L + L K+
Sbjct: 204 LKQACSDIRGGKFTDALSLLLNALHLQQKL 233
>SB_5274| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 246
Score = 39.1 bits (87), Expect = 0.003
Identities = 45/158 (28%), Positives = 69/158 (43%), Gaps = 3/158 (1%)
Frame = -1
Query: 663 NGMYIRSKSESLTASYLRNASCAHRSTGPANVPSLAPAHATIRQRAQSTTLDLSV*TLFN 484
N Y+ + S + AS L+NASC S+ NVP ++ ++R S LS L +
Sbjct: 92 NASYLMNASYLMNASDLKNASCLKNSSYLINVP-ISEVRLLSKERLLSKERLLSKVRLLS 150
Query: 483 NLKLVSSMDSAWSNLPSLISLLASLNSTSWKNVIAAGQSRSLESLLIKSNSDSNAAQRVD 304
+L+S L S LL+ S + +++ + S E LL K SN
Sbjct: 151 KERLLSK-----ERLLSKERLLSKERLLSKERLLSKVRLLSKERLLSKERLLSNERLLSK 205
Query: 303 IKLASK---LPTTVFLGNDKLLSSVGCSFFKPLYRSKK 199
++L SK L L N++LLS K L +K+
Sbjct: 206 VRLLSKERLLSNERLLSNERLLSKERLLSKKRLLSNKR 243
Score = 30.3 bits (65), Expect = 1.5
Identities = 37/142 (26%), Positives = 61/142 (42%)
Frame = -1
Query: 663 NGMYIRSKSESLTASYLRNASCAHRSTGPANVPSLAPAHATIRQRAQSTTLDLSV*TLFN 484
N Y+++ S ASYL NAS ++ N L A + ++ + + +S L +
Sbjct: 74 NASYLKNASYLKNASYLMNASYLMNASYLMNASDLKNA-SCLKNSSYLINVPISEVRLLS 132
Query: 483 NLKLVSSMDSAWSNLPSLISLLASLNSTSWKNVIAAGQSRSLESLLIKSNSDSNAAQRVD 304
+L+S L S + LL+ S + +++ + S E LL K S
Sbjct: 133 KERLLSK-----ERLLSKVRLLSKERLLSKERLLSKERLLSKERLLSKERLLSKVRLLSK 187
Query: 303 IKLASKLPTTVFLGNDKLLSSV 238
+L SK L N++LLS V
Sbjct: 188 ERLLSK---ERLLSNERLLSKV 206
>SB_38344| Best HMM Match : PX (HMM E-Value=8.1e-21)
Length = 632
Score = 36.7 bits (81), Expect = 0.017
Identities = 27/83 (32%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
Frame = +2
Query: 110 KKFVAYMVQVNRETDLADQDPANVERRYTHFLDLYNGLKKEQPTLLNNLSFPRKTVVGNF 289
K + Y + V R T + + RRY+ F DL+ LK + L NL P K N
Sbjct: 350 KTYAVYAISVFRATQ-EGTNSWTIYRRYSDFDDLHMHLKNKFGP-LPNLLLPGKRTFRNM 407
Query: 290 DANLISTRCAAFESLLD-LMSND 355
D + + R AA +S + L+S D
Sbjct: 408 DKDFLEKRRAALDSYIQTLLSTD 430
>SB_13906| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1067
Score = 31.5 bits (68), Expect = 0.64
Identities = 33/122 (27%), Positives = 51/122 (41%), Gaps = 4/122 (3%)
Frame = -1
Query: 627 TASYLRNASCAHRSTGPANVPSLAPAHATIRQRAQSTT----LDLSV*TLFNNLKLVSSM 460
TA+ L A S P L + + STT L+ S+ T LV ++
Sbjct: 356 TATTLAEAVAISSSVSPTTTSVLTSSMESSSMATTSTTSTPSLESSMTTNSTTSTLVEAV 415
Query: 459 DSAWSNLPSLISLLASLNSTSWKNVIAAGQSRSLESLLIKSNSDSNAAQRVDIKLASKLP 280
+ S LP+ S+L S +S + + SLES + +N+ A+ V + LP
Sbjct: 416 ALSSSVLPTTTSVLTSSMESSSMATTSTTSTPSLESSMTSNNTTLTLAEAVATS-SPVLP 474
Query: 279 TT 274
TT
Sbjct: 475 TT 476
Score = 29.1 bits (62), Expect = 3.4
Identities = 35/139 (25%), Positives = 56/139 (40%), Gaps = 4/139 (2%)
Frame = -1
Query: 645 SKSESLTASYLRNASCAHRSTGPANVPSLAPAHATIRQRAQSTT----LDLSV*TLFNNL 478
S + + T S L A S P L + STT L+ S+ T
Sbjct: 705 SMTTNSTTSTLAQAVAISSSVSPTTTSVLTSSMEFSSMATTSTTTTPSLESSMTTNSTTS 764
Query: 477 KLVSSMDSAWSNLPSLISLLASLNSTSWKNVIAAGQSRSLESLLIKSNSDSNAAQRVDIK 298
L ++ + LP+ S+L S +S + + SLES + +++ S A+ V I
Sbjct: 765 TLAEAVAISSPVLPTTTSVLTSSMESSSIATTSTTSTPSLESSMTTNSTTSTLAEAVAIS 824
Query: 297 LASKLPTTVFLGNDKLLSS 241
+ LPTT + + SS
Sbjct: 825 -SPVLPTTTSVLTSSMESS 842
Score = 27.9 bits (59), Expect = 7.9
Identities = 30/136 (22%), Positives = 55/136 (40%)
Frame = -1
Query: 645 SKSESLTASYLRNASCAHRSTGPANVPSLAPAHATIRQRAQSTTLDLSV*TLFNNLKLVS 466
+ + S A + +S ST S+ + + +L+ S+ T L
Sbjct: 607 NSTTSTPAEAVAISSLVLPSTTSVLTSSMESSSMATTSTTSTPSLESSMTTNSTTSTLAE 666
Query: 465 SMDSAWSNLPSLISLLASLNSTSWKNVIAAGQSRSLESLLIKSNSDSNAAQRVDIKLASK 286
++ + LP+ S+L S +S + + SLES + +++ S AQ V I +
Sbjct: 667 AVAISSPVLPTTTSVLTSSMESSSMATTSTTSAPSLESSMTTNSTTSTLAQAVAISSSVS 726
Query: 285 LPTTVFLGNDKLLSSV 238
TT L + SS+
Sbjct: 727 PTTTSVLTSSMEFSSM 742
>SB_28454| Best HMM Match : SDA1 (HMM E-Value=1.7)
Length = 383
Score = 30.7 bits (66), Expect = 1.1
Identities = 31/147 (21%), Positives = 61/147 (41%)
Frame = +2
Query: 74 ISSRTVDSSETEKKFVAYMVQVNRETDLADQDPANVERRYTHFLDLYNGLKKEQPTLLNN 253
+ TVD+SETE+K +++ TD D A E + G+ +E+ T N
Sbjct: 50 VDQSTVDNSETERK-NGTSLEIQDTTD--QPDAAQNEGS-----ENKGGVTREKDTRTEN 101
Query: 254 LSFPRKTVVGNFDANLISTRCAAFESLLDLMSNDSRLRDCPAAITFFQDVELSEAKRLIN 433
+ R + D+ ++ + + + R + +S+ K+
Sbjct: 102 RTPDRTSDEEESDSTILDDTSDSDHKSSVISRGSAASRKLSRHSQESANEHVSQTKKTEQ 161
Query: 434 EGKFDQALSILETSFKLLNKVYTDRSR 514
+G FD LS ++ + K L +++ D S+
Sbjct: 162 QGPFDDPLSSIKLTPKALKEIFADDSK 188
>SB_56522| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.6e-30)
Length = 3071
Score = 30.3 bits (65), Expect = 1.5
Identities = 24/65 (36%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Frame = +2
Query: 86 TVDSSETEKKFVAYMVQVNRETDLADQDPANVERRYTHFLDLYN-GLKKEQPTLLNNLSF 262
+V + E+ +YM V+RE DLA Q ER FL + N LKK TL N +S
Sbjct: 817 SVIQMKVEEVESSYMDAVDREKDLAGQ--LEDEREKNQFLQMDNEELKKTIKTLTNKVSE 874
Query: 263 PRKTV 277
++ V
Sbjct: 875 KQREV 879
>SB_8897| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 183
Score = 29.9 bits (64), Expect = 2.0
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +2
Query: 512 RVVLCALCRIVACAGASDGTLAGPVERWAQL 604
R+VL CRIV+ G ++ P RW L
Sbjct: 151 RIVLYLRCRIVSACGGQGSSVVSPRHRWQML 181
>SB_31091| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 607
Score = 29.5 bits (63), Expect = 2.6
Identities = 25/93 (26%), Positives = 35/93 (37%), Gaps = 4/93 (4%)
Frame = +2
Query: 179 VERRYTHFLDLYNGLKKEQPTLLNNLSFPRKTVVGNFDANLISTRCAAFESLLDLMSNDS 358
V RR+ HF LYN L ++ TL+ P K + G F + + R E + +
Sbjct: 197 VSRRFKHFDWLYNRL-VDKYTLIAIPPLPDKQITGRFGEDFVEKRREKLEKWVGRLCQHP 255
Query: 359 RLRDCPAAITFF----QDVELSEAKRLINEGKF 445
L P F + E KR KF
Sbjct: 256 VLSKSPVVNHFLTCADSEKEWKAGKRKAENDKF 288
>SB_11138| Best HMM Match : Yippee (HMM E-Value=6.1)
Length = 336
Score = 29.5 bits (63), Expect = 2.6
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +2
Query: 365 RDCPAAITFFQDVELSEAKRLINEGKFDQALSI 463
+DCP T V+L + R +N+G FDQ +I
Sbjct: 142 QDCPKFTTATGHVDLYDGSRCVNKGFFDQCNTI 174
>SB_6572| Best HMM Match : Xan_ur_permease (HMM E-Value=0.17)
Length = 258
Score = 29.1 bits (62), Expect = 3.4
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = -3
Query: 196 GVSSFNVRRILI-SQIRFSIHLYHVGYKFLLGLRTIHCP 83
GV+ V I I SQI +I + +GY+F G +HCP
Sbjct: 214 GVAFMTVALITIFSQILTNIKVPLLGYRFKKGFFVVHCP 252
>SB_18632| Best HMM Match : Nitrophorin (HMM E-Value=0.67)
Length = 258
Score = 27.9 bits (59), Expect = 7.9
Identities = 19/56 (33%), Positives = 25/56 (44%)
Frame = +2
Query: 119 VAYMVQVNRETDLADQDPANVERRYTHFLDLYNGLKKEQPTLLNNLSFPRKTVVGN 286
+ +M Q +++D A D A T L LY GLK E L F +K GN
Sbjct: 141 ILFMPQTKQKSDAAKNDIAAAGE--TALLCLYKGLKDETLDSLRYARFCQKISTGN 194
>SB_52058| Best HMM Match : Pneumovirus_M2 (HMM E-Value=9.4)
Length = 199
Score = 27.9 bits (59), Expect = 7.9
Identities = 13/60 (21%), Positives = 27/60 (45%)
Frame = +2
Query: 77 SSRTVDSSETEKKFVAYMVQVNRETDLADQDPANVERRYTHFLDLYNGLKKEQPTLLNNL 256
+ T + K +MV+ ++ +++DQ V ++ + G+ K L+NNL
Sbjct: 97 AKETFQMGKVHKDIAMFMVEASKNEEMSDQAFIKVHAYIHQDINPHVGINKHNEDLVNNL 156
>SB_10987| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 47
Score = 27.9 bits (59), Expect = 7.9
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +2
Query: 365 RDCPAAITFFQDVELSEAKRLINEGKFDQALSI 463
+DCP + V+L + R +N+G FDQ +I
Sbjct: 9 QDCPKFTSATGHVDLYDGSRCVNKGFFDQCNTI 41
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,525,401
Number of Sequences: 59808
Number of extensions: 456722
Number of successful extensions: 971
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 912
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 967
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1721264831
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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