Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0304
(672 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006832-7|AAF39999.1| 505|Caenorhabditis elegans Hypothetical ... 34 0.080
U58750-6|AAB00646.1| 2049|Caenorhabditis elegans Rod (drosophila... 34 0.11
Z82275-3|CAL44962.1| 478|Caenorhabditis elegans Hypothetical pr... 32 0.43
Z82265-8|CAB05169.2| 478|Caenorhabditis elegans Hypothetical pr... 32 0.43
AL021474-4|CAD54164.1| 445|Caenorhabditis elegans Hypothetical ... 31 0.75
Z81044-12|CAB02811.2| 527|Caenorhabditis elegans Hypothetical p... 30 1.3
Z47809-6|CAD57700.1| 1124|Caenorhabditis elegans Hypothetical pr... 30 1.3
Z47809-5|CAD57699.1| 1019|Caenorhabditis elegans Hypothetical pr... 30 1.3
Z47809-4|CAA87782.1| 1016|Caenorhabditis elegans Hypothetical pr... 30 1.3
Z36719-10|CAD57686.1| 1124|Caenorhabditis elegans Hypothetical p... 30 1.3
Z36719-9|CAD57685.1| 1019|Caenorhabditis elegans Hypothetical pr... 30 1.3
Z36719-8|CAA85318.1| 1016|Caenorhabditis elegans Hypothetical pr... 30 1.3
U86640-1|AAB47273.1| 1016|Caenorhabditis elegans MEL-11 protein. 30 1.3
AL021492-7|CAE17999.1| 282|Caenorhabditis elegans Hypothetical ... 29 3.0
Z83113-4|CAB05546.2| 1020|Caenorhabditis elegans Hypothetical pr... 29 4.0
AF180730-1|AAF06159.1| 1020|Caenorhabditis elegans RNA interfere... 29 4.0
Z81589-9|CAJ85769.1| 926|Caenorhabditis elegans Hypothetical pr... 28 5.3
Z81589-8|CAB04720.1| 923|Caenorhabditis elegans Hypothetical pr... 28 5.3
Z81132-10|CAB03433.1| 320|Caenorhabditis elegans Hypothetical p... 28 5.3
AF040661-18|AAG24217.1| 336|Caenorhabditis elegans Serpentine r... 28 5.3
AF040644-5|AAD34647.1| 1032|Caenorhabditis elegans Hypothetical ... 28 5.3
Z73972-4|CAA98260.1| 666|Caenorhabditis elegans Hypothetical pr... 28 6.9
U41508-3|AAN39664.1| 317|Caenorhabditis elegans Set (trithorax/... 28 6.9
U41508-2|AAN39665.2| 552|Caenorhabditis elegans Set (trithorax/... 28 6.9
M23078-1|AAA28125.1| 170|Caenorhabditis elegans protein ( C.ele... 28 6.9
AC024810-18|ABC71796.1| 787|Caenorhabditis elegans Abnormal cel... 28 6.9
AB212859-1|BAE66674.1| 787|Caenorhabditis elegans COGC-1 protein. 28 6.9
>AC006832-7|AAF39999.1| 505|Caenorhabditis elegans Hypothetical
protein ZK355.5 protein.
Length = 505
Score = 34.3 bits (75), Expect = 0.080
Identities = 33/126 (26%), Positives = 59/126 (46%), Gaps = 1/126 (0%)
Frame = +2
Query: 74 ISSRTVDSSETEKKFVAYMVQVNRETDLADQDPANVERRYTHFLDLYNGLKKEQPTLLNN 253
ISS+T+D + ++ +N TDL++ D +E + + +Y G+K E + L N
Sbjct: 52 ISSKTIDFFPRNCSKICGILVINSNTDLSEND---LEDLFENVNGIYGGVKMENSS-LTN 107
Query: 254 LSFPRKTVVGNFDANLISTRCAAFESLLDLMSNDSRLRDCPAAITFFQDVELSEAK-RLI 430
+SF K+ NF+ + C + + N+S+L + A FF + E ++
Sbjct: 108 ISF-LKSYPNNFNIS-----CTVYGVSI---INNSQLINLDAVKEFFFSIPFDECSFQVK 158
Query: 431 NEGKFD 448
N K D
Sbjct: 159 NNPKLD 164
>U58750-6|AAB00646.1| 2049|Caenorhabditis elegans Rod (drosophila
roughdeal) homologprotein 1 protein.
Length = 2049
Score = 33.9 bits (74), Expect = 0.11
Identities = 20/56 (35%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Frame = -1
Query: 447 SNLPSLISLLASLNSTSW-KNVIAAGQSRSLESLLIKSNSDSNAAQRVDIKLASKL 283
S + SLISLL +ST+W +N I A S + ++ +N ++ A Q + + SKL
Sbjct: 610 SLITSLISLLEYRDSTNWPENAIKAASSYDTMTKILSNNGNTPATQCILVMYGSKL 665
>Z82275-3|CAL44962.1| 478|Caenorhabditis elegans Hypothetical
protein F02H6.2 protein.
Length = 478
Score = 31.9 bits (69), Expect = 0.43
Identities = 15/63 (23%), Positives = 31/63 (49%)
Frame = +2
Query: 41 NKRLKMLRFKIISSRTVDSSETEKKFVAYMVQVNRETDLADQDPANVERRYTHFLDLYNG 220
+ L+ +R +++ + + ++F+ ++R L D+DP N +R F D N
Sbjct: 160 SSHLQSIRKEMVEQEKHEIKKLYEEFLLRTEVMDRAIKLCDEDPVNFQRELKFFRDEQNR 219
Query: 221 LKK 229
+KK
Sbjct: 220 IKK 222
>Z82265-8|CAB05169.2| 478|Caenorhabditis elegans Hypothetical
protein F02H6.2 protein.
Length = 478
Score = 31.9 bits (69), Expect = 0.43
Identities = 15/63 (23%), Positives = 31/63 (49%)
Frame = +2
Query: 41 NKRLKMLRFKIISSRTVDSSETEKKFVAYMVQVNRETDLADQDPANVERRYTHFLDLYNG 220
+ L+ +R +++ + + ++F+ ++R L D+DP N +R F D N
Sbjct: 160 SSHLQSIRKEMVEQEKHEIKKLYEEFLLRTEVMDRAIKLCDEDPVNFQRELKFFRDEQNR 219
Query: 221 LKK 229
+KK
Sbjct: 220 IKK 222
>AL021474-4|CAD54164.1| 445|Caenorhabditis elegans Hypothetical
protein Y32F6A.5 protein.
Length = 445
Score = 31.1 bits (67), Expect = 0.75
Identities = 14/50 (28%), Positives = 26/50 (52%)
Frame = -1
Query: 456 SAWSNLPSLISLLASLNSTSWKNVIAAGQSRSLESLLIKSNSDSNAAQRV 307
+ W N+ +LIS+ N SW N++ G + S ++SN + +R+
Sbjct: 242 NCWGNMENLISV--ETNDVSWYNILKKGDTDDWSSSAMRSNRVMTSTRRL 289
>Z81044-12|CAB02811.2| 527|Caenorhabditis elegans Hypothetical
protein C30H6.5 protein.
Length = 527
Score = 30.3 bits (65), Expect = 1.3
Identities = 15/39 (38%), Positives = 24/39 (61%)
Frame = -2
Query: 212 IDPKNGCIFFQRSQDLDQPNPFLDSPVPCRLQISSRSQN 96
+DPKNG + F ++ DQP+P P+P R + R++N
Sbjct: 233 LDPKNGNVIFSKTVYADQPSP----PLPQRF-VDRRNRN 266
>Z47809-6|CAD57700.1| 1124|Caenorhabditis elegans Hypothetical protein
C06C3.1c protein.
Length = 1124
Score = 30.3 bits (65), Expect = 1.3
Identities = 30/101 (29%), Positives = 46/101 (45%), Gaps = 1/101 (0%)
Frame = -1
Query: 666 SNGMYIRSKSESLTASYLRNASCAHRSTGPANVPSLAPAHATIRQRAQSTTLDLSV*TLF 487
SN +R KS+ L+ S R+TGP N LAPA ++R SV +
Sbjct: 864 SNSANVRRKSQGLSISRSNR-----RATGPVNPEDLAPA-MSLRLATAQPYSPASVRSNA 917
Query: 486 NNLKLVSSMDSAWS-NLPSLISLLASLNSTSWKNVIAAGQS 367
L ++S S + +LP + ++S S ++ I AG S
Sbjct: 918 GTLPTMTSRFSEKAQSLPPASNGMSSTQPLSTRSAIVAGLS 958
>Z47809-5|CAD57699.1| 1019|Caenorhabditis elegans Hypothetical protein
C06C3.1b protein.
Length = 1019
Score = 30.3 bits (65), Expect = 1.3
Identities = 30/101 (29%), Positives = 46/101 (45%), Gaps = 1/101 (0%)
Frame = -1
Query: 666 SNGMYIRSKSESLTASYLRNASCAHRSTGPANVPSLAPAHATIRQRAQSTTLDLSV*TLF 487
SN +R KS+ L+ S R+TGP N LAPA ++R SV +
Sbjct: 759 SNSANVRRKSQGLSISRSNR-----RATGPVNPEDLAPA-MSLRLATAQPYSPASVRSNA 812
Query: 486 NNLKLVSSMDSAWS-NLPSLISLLASLNSTSWKNVIAAGQS 367
L ++S S + +LP + ++S S ++ I AG S
Sbjct: 813 GTLPTMTSRFSEKAQSLPPASNGMSSTQPLSTRSAIVAGLS 853
>Z47809-4|CAA87782.1| 1016|Caenorhabditis elegans Hypothetical protein
C06C3.1a protein.
Length = 1016
Score = 30.3 bits (65), Expect = 1.3
Identities = 30/101 (29%), Positives = 46/101 (45%), Gaps = 1/101 (0%)
Frame = -1
Query: 666 SNGMYIRSKSESLTASYLRNASCAHRSTGPANVPSLAPAHATIRQRAQSTTLDLSV*TLF 487
SN +R KS+ L+ S R+TGP N LAPA ++R SV +
Sbjct: 756 SNSANVRRKSQGLSISRSNR-----RATGPVNPEDLAPA-MSLRLATAQPYSPASVRSNA 809
Query: 486 NNLKLVSSMDSAWS-NLPSLISLLASLNSTSWKNVIAAGQS 367
L ++S S + +LP + ++S S ++ I AG S
Sbjct: 810 GTLPTMTSRFSEKAQSLPPASNGMSSTQPLSTRSAIVAGLS 850
>Z36719-10|CAD57686.1| 1124|Caenorhabditis elegans Hypothetical
protein C06C3.1c protein.
Length = 1124
Score = 30.3 bits (65), Expect = 1.3
Identities = 30/101 (29%), Positives = 46/101 (45%), Gaps = 1/101 (0%)
Frame = -1
Query: 666 SNGMYIRSKSESLTASYLRNASCAHRSTGPANVPSLAPAHATIRQRAQSTTLDLSV*TLF 487
SN +R KS+ L+ S R+TGP N LAPA ++R SV +
Sbjct: 864 SNSANVRRKSQGLSISRSNR-----RATGPVNPEDLAPA-MSLRLATAQPYSPASVRSNA 917
Query: 486 NNLKLVSSMDSAWS-NLPSLISLLASLNSTSWKNVIAAGQS 367
L ++S S + +LP + ++S S ++ I AG S
Sbjct: 918 GTLPTMTSRFSEKAQSLPPASNGMSSTQPLSTRSAIVAGLS 958
>Z36719-9|CAD57685.1| 1019|Caenorhabditis elegans Hypothetical protein
C06C3.1b protein.
Length = 1019
Score = 30.3 bits (65), Expect = 1.3
Identities = 30/101 (29%), Positives = 46/101 (45%), Gaps = 1/101 (0%)
Frame = -1
Query: 666 SNGMYIRSKSESLTASYLRNASCAHRSTGPANVPSLAPAHATIRQRAQSTTLDLSV*TLF 487
SN +R KS+ L+ S R+TGP N LAPA ++R SV +
Sbjct: 759 SNSANVRRKSQGLSISRSNR-----RATGPVNPEDLAPA-MSLRLATAQPYSPASVRSNA 812
Query: 486 NNLKLVSSMDSAWS-NLPSLISLLASLNSTSWKNVIAAGQS 367
L ++S S + +LP + ++S S ++ I AG S
Sbjct: 813 GTLPTMTSRFSEKAQSLPPASNGMSSTQPLSTRSAIVAGLS 853
>Z36719-8|CAA85318.1| 1016|Caenorhabditis elegans Hypothetical protein
C06C3.1a protein.
Length = 1016
Score = 30.3 bits (65), Expect = 1.3
Identities = 30/101 (29%), Positives = 46/101 (45%), Gaps = 1/101 (0%)
Frame = -1
Query: 666 SNGMYIRSKSESLTASYLRNASCAHRSTGPANVPSLAPAHATIRQRAQSTTLDLSV*TLF 487
SN +R KS+ L+ S R+TGP N LAPA ++R SV +
Sbjct: 756 SNSANVRRKSQGLSISRSNR-----RATGPVNPEDLAPA-MSLRLATAQPYSPASVRSNA 809
Query: 486 NNLKLVSSMDSAWS-NLPSLISLLASLNSTSWKNVIAAGQS 367
L ++S S + +LP + ++S S ++ I AG S
Sbjct: 810 GTLPTMTSRFSEKAQSLPPASNGMSSTQPLSTRSAIVAGLS 850
>U86640-1|AAB47273.1| 1016|Caenorhabditis elegans MEL-11 protein.
Length = 1016
Score = 30.3 bits (65), Expect = 1.3
Identities = 30/101 (29%), Positives = 46/101 (45%), Gaps = 1/101 (0%)
Frame = -1
Query: 666 SNGMYIRSKSESLTASYLRNASCAHRSTGPANVPSLAPAHATIRQRAQSTTLDLSV*TLF 487
SN +R KS+ L+ S R+TGP N LAPA ++R SV +
Sbjct: 756 SNSANVRRKSQGLSISRSNR-----RATGPVNPEDLAPA-MSLRLATAQPYSPASVRSNA 809
Query: 486 NNLKLVSSMDSAWS-NLPSLISLLASLNSTSWKNVIAAGQS 367
L ++S S + +LP + ++S S ++ I AG S
Sbjct: 810 GTLPTMTSRFSEKAQSLPPASNGMSSTQPLSTRSAIVAGLS 850
>AL021492-7|CAE17999.1| 282|Caenorhabditis elegans Hypothetical
protein Y45F10D.14 protein.
Length = 282
Score = 29.1 bits (62), Expect = 3.0
Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Frame = +2
Query: 62 RFKIISSRTVDSSETEKKFVAYMVQVNRETDLADQDPA----NVERRYTHFLDLYNGLKK 229
+F +S + D +E E +++ E + AD++PA NV R +H L N +K+
Sbjct: 218 KFIEATSESNDLNENESLEEFIPIEIGNEPEFADEEPAGPPPNVRNRLSHDPVLVNNIKR 277
Query: 230 EQ 235
+
Sbjct: 278 RR 279
>Z83113-4|CAB05546.2| 1020|Caenorhabditis elegans Hypothetical
protein K08H10.7 protein.
Length = 1020
Score = 28.7 bits (61), Expect = 4.0
Identities = 27/98 (27%), Positives = 42/98 (42%), Gaps = 3/98 (3%)
Frame = +2
Query: 8 VLNAYIFYY*CNKRLKMLRFKIISSRTVDSSETEKKFVAYMVQVNRETD---LADQDPAN 178
V N +I K L LR + S R + K A + +N+E D +A+ P
Sbjct: 645 VANQHITSETVTKALASLRHEKGSKRIF--YQIALKINAKLGGINQELDWSEIAEISPEE 702
Query: 179 VERRYTHFLDLYNGLKKEQPTLLNNLSFPRKTVVGNFD 292
ERR T L +Y G+ PT + + + VV + +
Sbjct: 703 KERRKTMPLTMYVGIDVTHPTSYSGIDYSIAAVVASIN 740
>AF180730-1|AAF06159.1| 1020|Caenorhabditis elegans RNA interference
promoting factorRDE-1 protein.
Length = 1020
Score = 28.7 bits (61), Expect = 4.0
Identities = 27/98 (27%), Positives = 42/98 (42%), Gaps = 3/98 (3%)
Frame = +2
Query: 8 VLNAYIFYY*CNKRLKMLRFKIISSRTVDSSETEKKFVAYMVQVNRETD---LADQDPAN 178
V N +I K L LR + S R + K A + +N+E D +A+ P
Sbjct: 645 VANQHITSETVTKALASLRHEKGSKRIF--YQIALKINAKLGGINQELDWSEIAEISPEE 702
Query: 179 VERRYTHFLDLYNGLKKEQPTLLNNLSFPRKTVVGNFD 292
ERR T L +Y G+ PT + + + VV + +
Sbjct: 703 KERRKTMPLTMYVGIDVTHPTSYSGIDYSIAAVVASIN 740
>Z81589-9|CAJ85769.1| 926|Caenorhabditis elegans Hypothetical
protein T08G5.5b protein.
Length = 926
Score = 28.3 bits (60), Expect = 5.3
Identities = 32/114 (28%), Positives = 51/114 (44%), Gaps = 5/114 (4%)
Frame = +2
Query: 149 TDLADQDPANVERRYTHFLDLYNGLKKEQPTLLNNLSFPRKTVVGNFDANLISTRCAAFE 328
TD+ Q PANV F ++ + + P L+ LS R V FD L+ T +
Sbjct: 237 TDIWGQRPANVLSDEYKFSEVPMQIVYDSPYLVGMLSKGRVEVRSIFDGQLVQT--MSLP 294
Query: 329 SLLDLMSNDSRLRDCPAAITFFQDVELSEAKR-----LINEGKFDQALSILETS 475
+ L S +R + AA++ ++ S+ R LI E F+ A+ + E S
Sbjct: 295 KAMTLCSG-ARGQVFVAALSDIWILDTSQNLRKNVSHLIQERHFELAIQLAENS 347
>Z81589-8|CAB04720.1| 923|Caenorhabditis elegans Hypothetical
protein T08G5.5a protein.
Length = 923
Score = 28.3 bits (60), Expect = 5.3
Identities = 32/114 (28%), Positives = 51/114 (44%), Gaps = 5/114 (4%)
Frame = +2
Query: 149 TDLADQDPANVERRYTHFLDLYNGLKKEQPTLLNNLSFPRKTVVGNFDANLISTRCAAFE 328
TD+ Q PANV F ++ + + P L+ LS R V FD L+ T +
Sbjct: 237 TDIWGQRPANVLSDEYKFSEVPMQIVYDSPYLVGMLSKGRVEVRSIFDGQLVQT--MSLP 294
Query: 329 SLLDLMSNDSRLRDCPAAITFFQDVELSEAKR-----LINEGKFDQALSILETS 475
+ L S +R + AA++ ++ S+ R LI E F+ A+ + E S
Sbjct: 295 KAMTLCSG-ARGQVFVAALSDIWILDTSQNLRKNVSHLIQERHFELAIQLAENS 347
>Z81132-10|CAB03433.1| 320|Caenorhabditis elegans Hypothetical
protein T26E4.12 protein.
Length = 320
Score = 28.3 bits (60), Expect = 5.3
Identities = 27/89 (30%), Positives = 41/89 (46%), Gaps = 2/89 (2%)
Frame = -1
Query: 435 SLISLLASLNSTSWKNVIAAGQSRS-LESLLIKSNSDSNAAQRVDIKLASKLPTTVFLGN 259
S ++L+ L TS +IA R+ L S +K SD N ++++ +L + VFL +
Sbjct: 174 SALTLIIQLFITSILVLIAYAWIRNTLLSFAVKMGSDKNDVKKLNTRLVKVINFQVFLPS 233
Query: 258 DKLLS-SVGCSFFKPLYRSKKWVYLLSTF 175
L V F L K YL+S F
Sbjct: 234 FIFLGVFVFVGMFTQLIDPKISQYLVSVF 262
>AF040661-18|AAG24217.1| 336|Caenorhabditis elegans Serpentine
receptor, class h protein60 protein.
Length = 336
Score = 28.3 bits (60), Expect = 5.3
Identities = 18/64 (28%), Positives = 33/64 (51%)
Frame = -2
Query: 626 LLRIFVMQAVPTVPLALLMYHH*LQRMPQSDKEHKAPPLICLYKPYLII*NLFLVWTVPG 447
L + + A+ TVPL++L ++ L++ P K K P LI + + +F V++ P
Sbjct: 24 LRNAYHVTAIFTVPLSILTFYIILKKTPSRMKTMKVPLLIS-HASSTNLDLMFTVYSAPY 82
Query: 446 QIYP 435
+P
Sbjct: 83 AFFP 86
>AF040644-5|AAD34647.1| 1032|Caenorhabditis elegans Hypothetical
protein H04J21.1 protein.
Length = 1032
Score = 28.3 bits (60), Expect = 5.3
Identities = 17/54 (31%), Positives = 25/54 (46%)
Frame = +2
Query: 344 MSNDSRLRDCPAAITFFQDVELSEAKRLINEGKFDQALSILETSFKLLNKVYTD 505
+ N + L+D + + + L AK K Q+L L+TSF LNK D
Sbjct: 777 LPNSALLKDLEPILDELESIGLDFAKHSDAYSKAKQSLQELDTSFASLNKKIED 830
>Z73972-4|CAA98260.1| 666|Caenorhabditis elegans Hypothetical
protein F15H10.7 protein.
Length = 666
Score = 27.9 bits (59), Expect = 6.9
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = +2
Query: 197 HFLDLYNGLKKEQPTLLNNLSFPRKTVVGNFDAN 298
H + + +G+KK+ P ++ NL K + FD N
Sbjct: 431 HSIRIPDGIKKKYPQIVENLMVNSKLMTTQFDVN 464
>U41508-3|AAN39664.1| 317|Caenorhabditis elegans Set
(trithorax/polycomb) domaincontaining protein 20,
isoform a protein.
Length = 317
Score = 27.9 bits (59), Expect = 6.9
Identities = 17/72 (23%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
Frame = +2
Query: 101 ETEKKFVAYMVQVNRETDLADQDPANVERRYT-HFLDLYNGLKKEQPTLLNNLS-FPRKT 274
+T+K +A ++ N++ + P V ++YT L+L+ P + N+ F +
Sbjct: 142 DTDKYQLAAIIDTNKKQKSVKKYPPFVNKKYTSSILELHETPLSLNPRYVGNVGRFVSSS 201
Query: 275 VVGNFDANLIST 310
+GN N + T
Sbjct: 202 CMGNVKLNFVHT 213
>U41508-2|AAN39665.2| 552|Caenorhabditis elegans Set
(trithorax/polycomb) domaincontaining protein 20,
isoform b protein.
Length = 552
Score = 27.9 bits (59), Expect = 6.9
Identities = 17/72 (23%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
Frame = +2
Query: 101 ETEKKFVAYMVQVNRETDLADQDPANVERRYT-HFLDLYNGLKKEQPTLLNNLS-FPRKT 274
+T+K +A ++ N++ + P V ++YT L+L+ P + N+ F +
Sbjct: 377 DTDKYQLAAIIDTNKKQKSVKKYPPFVNKKYTSSILELHETPLSLNPRYVGNVGRFVSSS 436
Query: 275 VVGNFDANLIST 310
+GN N + T
Sbjct: 437 CMGNVKLNFVHT 448
>M23078-1|AAA28125.1| 170|Caenorhabditis elegans protein (
C.elegans dpy-20 to unc-22 region mRNA encoding a
conserved ORF, clone pCesC5.).
Length = 170
Score = 27.9 bits (59), Expect = 6.9
Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 3/84 (3%)
Frame = +2
Query: 173 ANVERRYTHFLDLYNGLKKEQPTLLNNLSFPRKTVVGNFDANLISTRCAAFESLLDLMSN 352
A + R+++HF+ Y L K TLL + F + G+ D+ L T +L ++N
Sbjct: 77 ALISRQFSHFVIGYIQLFKSSATLLEPVLFSLLVLPGSEDSELSWTSYFLIHALTLTVAN 136
Query: 353 DSRL---RDCPAAITFFQDVELSE 415
+ R PA ++ELS+
Sbjct: 137 TVYVLLARSEPADFVLNAELELSK 160
>AC024810-18|ABC71796.1| 787|Caenorhabditis elegans Abnormal cell
migration protein 30 protein.
Length = 787
Score = 27.9 bits (59), Expect = 6.9
Identities = 17/56 (30%), Positives = 28/56 (50%)
Frame = +2
Query: 329 SLLDLMSNDSRLRDCPAAITFFQDVELSEAKRLINEGKFDQALSILETSFKLLNKV 496
+LLD+ +D AAI Q ++S+ L E +F+ ++E S +LN V
Sbjct: 159 TLLDISRSDWATNQL-AAIALLQGKDISQLLELYLEKRFEHVTHLIEDSATILNIV 213
>AB212859-1|BAE66674.1| 787|Caenorhabditis elegans COGC-1 protein.
Length = 787
Score = 27.9 bits (59), Expect = 6.9
Identities = 17/56 (30%), Positives = 28/56 (50%)
Frame = +2
Query: 329 SLLDLMSNDSRLRDCPAAITFFQDVELSEAKRLINEGKFDQALSILETSFKLLNKV 496
+LLD+ +D AAI Q ++S+ L E +F+ ++E S +LN V
Sbjct: 159 TLLDISRSDWATNQL-AAIALLQGKDISQLLELYLEKRFEHVTHLIEDSATILNIV 213
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,158,061
Number of Sequences: 27780
Number of extensions: 358494
Number of successful extensions: 908
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 882
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 908
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1518563232
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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