Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0304
         (672 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    26   0.28 
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    26   0.28 
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    22   6.1  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               21   8.1  
AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective...    21   8.1  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            21   8.1  

>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 26.2 bits (55), Expect = 0.28
 Identities = 13/68 (19%), Positives = 35/68 (51%)
 Frame = +2

Query: 227 KEQPTLLNNLSFPRKTVVGNFDANLISTRCAAFESLLDLMSNDSRLRDCPAAITFFQDVE 406
           K QPT  ++     +++ G  +  L++   +++ +L   ++N+S   +    IT  Q ++
Sbjct: 34  KLQPTYFHHTYIIYESLCGRHEKRLLNELLSSYNTLERPVANESEPLEVKFGITLQQIID 93

Query: 407 LSEAKRLI 430
           + E  +++
Sbjct: 94  VDEKNQIL 101


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 26.2 bits (55), Expect = 0.28
 Identities = 13/68 (19%), Positives = 35/68 (51%)
 Frame = +2

Query: 227 KEQPTLLNNLSFPRKTVVGNFDANLISTRCAAFESLLDLMSNDSRLRDCPAAITFFQDVE 406
           K QPT  ++     +++ G  +  L++   +++ +L   ++N+S   +    IT  Q ++
Sbjct: 34  KLQPTYFHHTYIIYESLCGRHEKRLLNELLSSYNTLERPVANESEPLEVKFGITLQQIID 93

Query: 407 LSEAKRLI 430
           + E  +++
Sbjct: 94  VDEKNQIL 101


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 10/36 (27%), Positives = 18/36 (50%)
 Frame = +2

Query: 287 FDANLISTRCAAFESLLDLMSNDSRLRDCPAAITFF 394
           FD   ++T    FE+L + +   +   +  +AIT F
Sbjct: 138 FDCRYVTTTSGMFEALCNHIKYSTNKGNIRSAITIF 173


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = +2

Query: 137 VNRETDLADQDPANVERRYTHFLDLYNGLKKEQPTL 244
           +N   D+ +QD    +RR  H  D    L+ E+  L
Sbjct: 323 LNILVDMCEQDIIQNDRRTRHLSDRVVALEAEKKNL 358


>AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective
           protein-1 protein.
          Length = 128

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 8/23 (34%), Positives = 11/23 (47%)
 Frame = +2

Query: 515 VVLCALCRIVACAGASDGTLAGP 583
           + + + C IV CA   D    GP
Sbjct: 50  IAMSSACGIVQCAKGPDELCGGP 72


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -1

Query: 486 NNLKLVSSMDSAWSNLPSLISLL 418
           NNLK + +    W  LPS  SL+
Sbjct: 281 NNLKWLVNWGEQWGFLPSKDSLV 303


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 196,893
Number of Sequences: 438
Number of extensions: 4311
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20343105
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)