Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0304
(672 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g79550.2 68414.m09274 phosphoglycerate kinase, putative simil... 36 0.025
At1g79550.1 68414.m09273 phosphoglycerate kinase, putative simil... 36 0.025
At1g24460.1 68414.m03081 myosin-related contains TIGRFAM TIGR016... 31 0.53
At3g47890.1 68416.m05222 ubiquitin carboxyl-terminal hydrolase-r... 31 0.92
At3g15920.1 68416.m02013 phox (PX) domain-containing protein wea... 30 1.6
At5g60710.1 68418.m07618 zinc finger (C3HC4-type RING finger) fa... 29 2.1
At4g16900.1 68417.m02551 disease resistance protein (TIR-NBS-LRR... 29 2.1
At3g18310.1 68416.m02330 expressed protein 29 2.8
At1g28610.2 68414.m03523 GDSL-motif lipase, putative similar to ... 29 2.8
At1g28610.1 68414.m03524 GDSL-motif lipase, putative similar to ... 29 2.8
At2g46560.1 68415.m05808 transducin family protein / WD-40 repea... 29 3.7
At5g42920.2 68418.m05233 expressed protein 28 4.9
At5g42920.1 68418.m05232 expressed protein 28 4.9
At4g32400.1 68417.m04613 mitochondrial substrate carrier family ... 28 6.5
At3g46370.1 68416.m05022 leucine-rich repeat protein kinase, put... 28 6.5
At5g45060.1 68418.m05525 disease resistance protein (TIR-NBS-LRR... 27 8.6
At1g15240.1 68414.m01824 phox (PX) domain-containing protein wea... 27 8.6
>At1g79550.2 68414.m09274 phosphoglycerate kinase, putative similar
to SP|P41758 Phosphoglycerate kinase, chloroplast
precursor (EC 2.7.2.3) {Chlamydomonas reinhardtii};
contains Pfam profile PF00162: phosphoglycerate kinase
Length = 401
Score = 35.9 bits (79), Expect = 0.025
Identities = 24/83 (28%), Positives = 40/83 (48%)
Frame = +2
Query: 221 LKKEQPTLLNNLSFPRKTVVGNFDANLISTRCAAFESLLDLMSNDSRLRDCPAAITFFQD 400
++KE L+ ++ P+K + +ST+ ESLL+ + D L TF++
Sbjct: 176 MQKELDYLVGAVANPKKPFAAIVGGSKVSTKIGVIESLLNTV--DILLLGGGMIFTFYKA 233
Query: 401 VELSEAKRLINEGKFDQALSILE 469
LS L+ E K D A S++E
Sbjct: 234 QGLSVGSSLVEEDKLDLAKSLME 256
>At1g79550.1 68414.m09273 phosphoglycerate kinase, putative similar
to SP|P41758 Phosphoglycerate kinase, chloroplast
precursor (EC 2.7.2.3) {Chlamydomonas reinhardtii};
contains Pfam profile PF00162: phosphoglycerate kinase
Length = 401
Score = 35.9 bits (79), Expect = 0.025
Identities = 24/83 (28%), Positives = 40/83 (48%)
Frame = +2
Query: 221 LKKEQPTLLNNLSFPRKTVVGNFDANLISTRCAAFESLLDLMSNDSRLRDCPAAITFFQD 400
++KE L+ ++ P+K + +ST+ ESLL+ + D L TF++
Sbjct: 176 MQKELDYLVGAVANPKKPFAAIVGGSKVSTKIGVIESLLNTV--DILLLGGGMIFTFYKA 233
Query: 401 VELSEAKRLINEGKFDQALSILE 469
LS L+ E K D A S++E
Sbjct: 234 QGLSVGSSLVEEDKLDLAKSLME 256
>At1g24460.1 68414.m03081 myosin-related contains TIGRFAM TIGR01612:
reticulocyte binding protein; similar to Myosin heavy
chain, non-muscle (Zipper protein) (Myosin II)
(SP:Q99323) {Drosophila melanogaster} similar to EST
gb|T76116
Length = 1730
Score = 31.5 bits (68), Expect = 0.53
Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Frame = -1
Query: 528 AQSTTLDLSV*TLFNNL-KLVSSMDSAWSNLPSLISLLASLNSTSWKNVIAAGQSRSLES 352
A+STT +L + N L KL+S ++ L S ++ S SW V A + + S
Sbjct: 1507 AESTT-ELELVKAKNELSKLISGLEKLLGILASNNPVVDPNFSESWTLVQAL--EKKITS 1563
Query: 351 LLIKSNSDSNAAQRVDIKLA 292
LL++S S + AQ + +KLA
Sbjct: 1564 LLLESESSKSRAQELGLKLA 1583
>At3g47890.1 68416.m05222 ubiquitin carboxyl-terminal
hydrolase-related contains Pfam profiles PF00443:
Ubiquitin carboxyl-terminal hydrolase, PF04780: Protein
of unknown function (DUF629), PF04781: Protein of unknown
function (DUF627)
Length = 1568
Score = 30.7 bits (66), Expect = 0.92
Identities = 23/110 (20%), Positives = 50/110 (45%)
Frame = +2
Query: 215 NGLKKEQPTLLNNLSFPRKTVVGNFDANLISTRCAAFESLLDLMSNDSRLRDCPAAITFF 394
N L++E+ L L + R+ + I+ + + + ++ DC FF
Sbjct: 981 NELEEEERKLAKTLEYQRR-IENEAKEKHIAEQKKKYSCSDPMNVTEAVYDDCIE--NFF 1037
Query: 395 QDVELSEAKRLINEGKFDQALSILETSFKLLNKVYTDRSRVVLCALCRIV 544
D +L E ++ IN+ K+++ L LE + +N V+ + V+ +++
Sbjct: 1038 DDADLQEQEKPINQEKWNKQLDDLEGAKVNINGVFPSTNHCVISDTAKVL 1087
>At3g15920.1 68416.m02013 phox (PX) domain-containing protein weak
similarity to myosin heavy chain [Rana catesbeiana]
GI:4249699; contains Pfam profile PF00787: PX domain
Length = 755
Score = 29.9 bits (64), Expect = 1.6
Identities = 24/94 (25%), Positives = 43/94 (45%), Gaps = 1/94 (1%)
Frame = +2
Query: 119 VAYMVQVNRETDLADQDPANVERRYTHFLDLYNGLKKEQPTLLNNL-SFPRKTVVGNFDA 295
V Y VQV ++ V RR+ FL+LY+ +KKE + +L P K ++ +
Sbjct: 127 VFYRVQVAIQSPEGITSARLVLRRFNDFLELYSSIKKE--FVKKSLPQAPPKKILRMRNQ 184
Query: 296 NLISTRCAAFESLLDLMSNDSRLRDCPAAITFFQ 397
L+ R + E ++ + +D + TF +
Sbjct: 185 TLLEERRCSLEDWMNRLLSDIDISRSALIATFLE 218
>At5g60710.1 68418.m07618 zinc finger (C3HC4-type RING finger)
family protein low similarity to SP|P97280
Inter-alpha-trypsin inhibitor heavy chain H3 precursor
{Mesocricetus auratus}; contains Pfam profiles PF00097:
Zinc finger, C3HC4 type (RING finger), PF00092: von
Willebrand factor type A domain
Length = 704
Score = 29.5 bits (63), Expect = 2.1
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = +2
Query: 407 LSEAKRLINEGKFDQALSILETSFKLLNKVYTDRSRVVLC-ALC 535
+SEA+ L G +A+S+LET LL + + R+ LC LC
Sbjct: 564 ISEARVLAERGDLTEAVSVLETCRGLLTESVSGRAGDQLCVTLC 607
>At4g16900.1 68417.m02551 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1072
Score = 29.5 bits (63), Expect = 2.1
Identities = 18/39 (46%), Positives = 24/39 (61%), Gaps = 3/39 (7%)
Frame = -1
Query: 285 LPTTVFLGNDKLLSSVGCSFFK--PLY-RSKKWVYLLST 178
LPT V L + K+L GCS + PL +S KW+YL +T
Sbjct: 772 LPTDVNLSSLKMLDLSGCSSLRTFPLISKSIKWLYLENT 810
>At3g18310.1 68416.m02330 expressed protein
Length = 873
Score = 29.1 bits (62), Expect = 2.8
Identities = 13/41 (31%), Positives = 25/41 (60%)
Frame = -1
Query: 465 SMDSAWSNLPSLISLLASLNSTSWKNVIAAGQSRSLESLLI 343
++ WS+LP I +LA N + + +V+ + +SLE L++
Sbjct: 624 ALRETWSSLPKEILMLAFSNYSEFADVLVDKKKQSLEFLVV 664
>At1g28610.2 68414.m03523 GDSL-motif lipase, putative similar to
lipase [Arabidopsis thaliana] GI:1145627; contains Pfam
profile: PF00657 Lipase/Acylhydrolase with GDSL-like
motif
Length = 383
Score = 29.1 bits (62), Expect = 2.8
Identities = 18/60 (30%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Frame = -1
Query: 441 LPSLISLLASLNSTSWKNVIAAG-QSRSLESLLIKSNSDSNAAQRVDIKLASKLPTTVFL 265
+ SL SL++ ST + ++++ Q R+LES++ +S ++ V + + LP T FL
Sbjct: 1 MASLDSLVSFFLSTLFVTIVSSQTQCRNLESIISFGDSITDTGNLVGLSDRNHLPVTAFL 60
>At1g28610.1 68414.m03524 GDSL-motif lipase, putative similar to
lipase [Arabidopsis thaliana] GI:1145627; contains Pfam
profile: PF00657 Lipase/Acylhydrolase with GDSL-like
motif
Length = 250
Score = 29.1 bits (62), Expect = 2.8
Identities = 18/60 (30%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Frame = -1
Query: 441 LPSLISLLASLNSTSWKNVIAAG-QSRSLESLLIKSNSDSNAAQRVDIKLASKLPTTVFL 265
+ SL SL++ ST + ++++ Q R+LES++ +S ++ V + + LP T FL
Sbjct: 1 MASLDSLVSFFLSTLFVTIVSSQTQCRNLESIISFGDSITDTGNLVGLSDRNHLPVTAFL 60
>At2g46560.1 68415.m05808 transducin family protein / WD-40 repeat
family protein similar to CPY (GI:3096961) {Chironomus
thummi}; contains Pfam PF00400: WD domain, G-beta repeat
(8 copies, 3 weak)|9780477|gb|BE522499.1|BE522499
Length = 2471
Score = 28.7 bits (61), Expect = 3.7
Identities = 19/48 (39%), Positives = 25/48 (52%)
Frame = -1
Query: 375 GQSRSLESLLIKSNSDSNAAQRVDIKLASKLPTTVFLGNDKLLSSVGC 232
GQ +LES LIK +A QR D LAS L + + +L+ GC
Sbjct: 1365 GQGGALESNLIKKYILPSAVQRGDFWLASLLKWELGEYHRSILAMAGC 1412
>At5g42920.2 68418.m05233 expressed protein
Length = 819
Score = 28.3 bits (60), Expect = 4.9
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = -1
Query: 441 LPSLISLLASLNSTSWKNVIAAGQSRSLESLLIKSNSDS 325
LPSL++ ASL S++ + Q+RS + L+ N DS
Sbjct: 571 LPSLVTAAASLTSSNHTPSKVSNQARSRQLALMTKNLDS 609
>At5g42920.1 68418.m05232 expressed protein
Length = 702
Score = 28.3 bits (60), Expect = 4.9
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = -1
Query: 441 LPSLISLLASLNSTSWKNVIAAGQSRSLESLLIKSNSDS 325
LPSL++ ASL S++ + Q+RS + L+ N DS
Sbjct: 454 LPSLVTAAASLTSSNHTPSKVSNQARSRQLALMTKNLDS 492
>At4g32400.1 68417.m04613 mitochondrial substrate carrier family
protein
Length = 392
Score = 27.9 bits (59), Expect = 6.5
Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
Frame = +2
Query: 455 LSILETSFKLLNKVYTDRSRVVLCALCRIVACAGASDGTLAGPVER-WAQLALRR--YEA 625
L + ET K L+ + S++ + A ACAG S L P+E +L ++R Y+
Sbjct: 182 LFVFETVNKKLSPPHGQESKIPIPASLLAGACAGVSQTLLTYPLELVKTRLTIQRGVYKG 241
Query: 626 VSDSDLLLI 652
+ D+ L +I
Sbjct: 242 IFDAFLKII 250
>At3g46370.1 68416.m05022 leucine-rich repeat protein kinase,
putative similar to light repressible receptor protein
kinase [Arabidopsis thalian] gi|1321686|emb|CAA66376;
contains leucine rich repeat (LRR) domains,
Pfam:PF00560; contains protein kinase domain,
Pfam:PF00069
Length = 793
Score = 27.9 bits (59), Expect = 6.5
Identities = 15/59 (25%), Positives = 28/59 (47%)
Frame = -1
Query: 429 ISLLASLNSTSWKNVIAAGQSRSLESLLIKSNSDSNAAQRVDIKLASKLPTTVFLGNDK 253
I L +N +WK +I +S SL+ LIK+ + + ++++ K G+ K
Sbjct: 47 IDLGKHVNGDTWKEIIHIPKSNSLDVCLIKTGTTTPIISTLELRSLPKYSYNAISGSLK 105
>At5g45060.1 68418.m05525 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1165
Score = 27.5 bits (58), Expect = 8.6
Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 7/62 (11%)
Frame = -3
Query: 247 KQRRLFLF*TII*IQKMGVSSFNVRRIL--ISQIRFSIHLYHVGYKFLLGLRTI-----H 89
KQRRL++ II +Q+ + + NVR I +S+++ L +K + LR + H
Sbjct: 534 KQRRLWVRQDIINVQQKTMGAANVRGIFLDLSEVKVETSLDREHFKNMRNLRYLKLYNSH 593
Query: 88 CP 83
CP
Sbjct: 594 CP 595
>At1g15240.1 68414.m01824 phox (PX) domain-containing protein weak
similarity to SP|Q9Y5W8 Sorting nexin 13 {Homo sapiens};
contains Pfam profiles PF00787: PX domain, PF02194: PXA
domain
Length = 706
Score = 27.5 bits (58), Expect = 8.6
Identities = 24/93 (25%), Positives = 43/93 (46%)
Frame = +2
Query: 59 LRFKIISSRTVDSSETEKKFVAYMVQVNRETDLADQDPANVERRYTHFLDLYNGLKKEQP 238
LR +++ + V S K F Y V V E++ + +++RR+ HF +L+ L K P
Sbjct: 613 LRCEVLGANIVKGSS--KMFAVYSVAVTDESNHS----WSIKRRFRHFEELHRRL-KVFP 665
Query: 239 TLLNNLSFPRKTVVGNFDANLISTRCAAFESLL 337
+L P+ + D +I RC + +
Sbjct: 666 EYKLHLP-PKHFLSTGVDIPVIQERCVLLDEYI 697
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,097,601
Number of Sequences: 28952
Number of extensions: 327443
Number of successful extensions: 798
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 773
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 796
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1422784080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -