Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0303
(663 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_10931| Best HMM Match : No HMM Matches (HMM E-Value=.) 50 1e-06
SB_39285| Best HMM Match : Proteasome (HMM E-Value=0) 36 0.022
SB_48652| Best HMM Match : RVT_1 (HMM E-Value=0.0009) 36 0.029
SB_50062| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.21
SB_22053| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.5
SB_28327| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.6
SB_50916| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_8505| Best HMM Match : CitD (HMM E-Value=0.91) 28 7.8
>SB_10931| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 467
Score = 50.4 bits (115), Expect = 1e-06
Identities = 30/102 (29%), Positives = 53/102 (51%), Gaps = 2/102 (1%)
Frame = +3
Query: 219 GTTIVGIIYADGVILGADTRATENTVVSDKNCQKIHYLASNMYCCG--AGTAADTEMTTQ 392
GTT + + GVI+ D+RAT + ++ + +K+ + N Y G AG AAD +
Sbjct: 28 GTTTLAFKFKHGVIVAVDSRATAGSYIASQTVKKV--IEINPYLLGTMAGGAADCSFWER 85
Query: 393 SVASQLELQRLHTGRTVPVETAATLLKRMLFRYQGHIGAALV 518
+A Q + L + V A+ +L M++ Y+G +G ++V
Sbjct: 86 LLAKQCRIYELRNKERISVAAASKILANMVYYYKG-MGLSMV 126
Score = 34.3 bits (75), Expect = 0.090
Identities = 20/62 (32%), Positives = 33/62 (53%)
Frame = +3
Query: 477 MLFRYQGHIGAALVLGGVDRTGPHIYCIYPHGSVDKLPYATMGSGSLAAMAVFEAGWKRD 656
M F +QG ++ G D+ GP +Y + G+ ++GSGS A V ++G+K D
Sbjct: 146 MFFTFQG-----TMICGWDKKGPGLYYVDSDGTRLSNQMFSVGSGSTYAYGVMDSGYKYD 200
Query: 657 MN 662
M+
Sbjct: 201 MS 202
>SB_39285| Best HMM Match : Proteasome (HMM E-Value=0)
Length = 215
Score = 36.3 bits (80), Expect = 0.022
Identities = 36/155 (23%), Positives = 63/155 (40%), Gaps = 6/155 (3%)
Frame = +3
Query: 198 APKATKTGTTIVGIIYADGVILGADTRATENTVVSDKNCQKIHYLASNMYCCGAGTAADT 377
A +A K G+T VG+ + V+LG + +A + + +KI L ++ AG AD
Sbjct: 24 AQEAVKKGSTAVGVRGNNIVVLGVERKAVAK-LQEPRTVRKICTLDDHVLMAFAGLTADA 82
Query: 378 EMTTQSVASQLELQRLHTGRTVPVETAATLLKRMLFRY-----QGHIGAALVLGGVDRTG 542
+ + + +L V +E + + RY + G + ++ G D G
Sbjct: 83 RILVNKARVECQSHKLTVEDPVTLEYITRFIATLKQRYTQSNGRRPFGISTLIVGFDFDG 142
Query: 543 -PHIYCIYPHGSVDKLPYATMGSGSLAAMAVFEAG 644
P +Y P G+ G G +AV + G
Sbjct: 143 TPRLYQTDPSGTYHAWKVVQSG-GKNIELAVMKKG 176
>SB_48652| Best HMM Match : RVT_1 (HMM E-Value=0.0009)
Length = 938
Score = 35.9 bits (79), Expect = 0.029
Identities = 17/55 (30%), Positives = 30/55 (54%)
Frame = +3
Query: 210 TKTGTTIVGIIYADGVILGADTRATENTVVSDKNCQKIHYLASNMYCCGAGTAAD 374
T TGT+++GI + GV++ ADT + ++ +N ++ + N AG AD
Sbjct: 872 TTTGTSVLGIKFNGGVLMAADTLGSYGSLARYRNISRLMRVNENTIIGAAGDYAD 926
>SB_50062| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 299
Score = 33.1 bits (72), Expect = 0.21
Identities = 17/47 (36%), Positives = 24/47 (51%)
Frame = +3
Query: 177 LAQKGFPAPKATKTGTTIVGIIYADGVILGADTRATENTVVSDKNCQ 317
L + G P P + G VG I A G +L + TRA V++ NC+
Sbjct: 84 LKRLGIPPPLLSMGGAEFVGAIRARGGLLFSKTRAARGRQVANVNCE 130
>SB_22053| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1670
Score = 30.3 bits (65), Expect = 1.5
Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Frame = +3
Query: 372 DTEMTTQSVASQLELQRLHT--GRTVPVETAATLLKRMLFRYQGH 500
D + V S E+ RLHT GR+ PVE LLK+ L + + H
Sbjct: 250 DKKDEDSKVMSSQEVSRLHTPQGRSTPVEPHLQLLKQALKQVKPH 294
>SB_28327| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 576
Score = 29.5 bits (63), Expect = 2.6
Identities = 18/42 (42%), Positives = 23/42 (54%)
Frame = -1
Query: 600 WLHMVIYLQIHEDKCSKYEDRFCQHLPKPEQPLYGLDSEIAF 475
WL M I +EDK + F +HL K E P+ LD+EI F
Sbjct: 53 WLEMKISAAKYEDKIPPFWSDFLKHL-KQEYPVV-LDNEINF 92
>SB_50916| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1681
Score = 29.1 bits (62), Expect = 3.4
Identities = 13/24 (54%), Positives = 18/24 (75%)
Frame = +3
Query: 351 CGAGTAADTEMTTQSVASQLELQR 422
C GTAA T +T QSVAS ++++R
Sbjct: 637 CKRGTAALTNVTKQSVASVVDIER 660
>SB_8505| Best HMM Match : CitD (HMM E-Value=0.91)
Length = 909
Score = 27.9 bits (59), Expect = 7.8
Identities = 17/71 (23%), Positives = 29/71 (40%), Gaps = 3/71 (4%)
Frame = +3
Query: 315 QKIHYLAS-NMYCCGAGTAADTEMTTQSVASQLELQR--LHTGRTVPVETAATLLKRMLF 485
QK+H + CC + LE+ +H+G +PVE L+ +L
Sbjct: 82 QKLHLVYEITALCCAFNPKNLLQKVVDLCVESLEMYNGDVHSGDGLPVEVTLDLVNYLLK 141
Query: 486 RYQGHIGAALV 518
+ GH G ++
Sbjct: 142 QESGHDGVTML 152
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,333,594
Number of Sequences: 59808
Number of extensions: 415885
Number of successful extensions: 1095
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1027
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1095
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1705624125
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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