Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0303
(663 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z99709-4|CAB16855.1| 277|Caenorhabditis elegans Hypothetical pr... 173 7e-44
AC006672-3|AAK84540.1| 239|Caenorhabditis elegans Proteasome be... 80 1e-15
Z81564-1|CAB04567.1| 284|Caenorhabditis elegans Hypothetical pr... 73 2e-13
U55855-2|AAA98018.1| 204|Caenorhabditis elegans Proteasome beta... 51 8e-07
Z79754-8|CAB02097.1| 248|Caenorhabditis elegans Hypothetical pr... 45 6e-05
AC006708-4|AAF60416.2| 250|Caenorhabditis elegans Proteasome al... 43 2e-04
Z80215-2|CAB02269.1| 253|Caenorhabditis elegans Hypothetical pr... 42 3e-04
Z74030-2|CAA98441.1| 231|Caenorhabditis elegans Hypothetical pr... 36 0.019
AC006749-1|AAV28322.1| 1372|Caenorhabditis elegans Hypothetical ... 31 0.73
Z77661-2|CAB01184.4| 265|Caenorhabditis elegans Hypothetical pr... 31 0.96
AC006749-2|AAF60533.3| 731|Caenorhabditis elegans Hypothetical ... 29 3.9
Z81079-4|CAB03081.1| 236|Caenorhabditis elegans Hypothetical pr... 28 5.1
Z99171-7|CAB16312.1| 188|Caenorhabditis elegans Hypothetical pr... 27 9.0
>Z99709-4|CAB16855.1| 277|Caenorhabditis elegans Hypothetical
protein C47B2.4 protein.
Length = 277
Score = 173 bits (422), Expect = 7e-44
Identities = 79/172 (45%), Positives = 111/172 (64%)
Frame = +3
Query: 144 FSFENFQRNAFLAQKGFPAPKATKTGTTIVGIIYADGVILGADTRATENTVVSDKNCQKI 323
F F N RN + + G APK T TGTTIV + + G+++GAD+RAT +++DK+C+K+
Sbjct: 21 FDFSNCIRNQAMCKMGGKAPKLTSTGTTIVAVAFKGGLVMGADSRATAGNIIADKHCEKV 80
Query: 324 HYLASNMYCCGAGTAADTEMTTQSVASQLELQRLHTGRTVPVETAATLLKRMLFRYQGHI 503
H L ++Y CGAGTAAD + T+ ++ L L L+TGR V TA K+ LF YQG+I
Sbjct: 81 HKLTESIYACGAGTAADLDQVTKMLSGNLRLLELNTGRKARVITALRQAKQHLFNYQGYI 140
Query: 504 GAALVLGGVDRTGPHIYCIYPHGSVDKLPYATMGSGSLAAMAVFEAGWKRDM 659
GA L++GGVD TGPH+Y +G+ P+ GSGS AA+ + E +K DM
Sbjct: 141 GAYLLIGGVDPTGPHLYMCSANGTTMAFPFTAQGSGSYAAITILERDFKVDM 192
>AC006672-3|AAK84540.1| 239|Caenorhabditis elegans Proteasome beta
subunit protein 1 protein.
Length = 239
Score = 80.2 bits (189), Expect = 1e-15
Identities = 38/158 (24%), Positives = 79/158 (50%), Gaps = 1/158 (0%)
Frame = +3
Query: 189 GFPAPKATKTGTTIVGIIYADGVILGADTRATENTVVSDKNCQKIHYLASNMYCCGAGTA 368
GF + TGTT++ + Y GV++G D+R + + ++ + KI + NM C +G+A
Sbjct: 13 GFYPQEEISTGTTLIAMEYNGGVVVGTDSRTSAGSFITSRATNKITPITDNMVVCRSGSA 72
Query: 369 ADTEMTTQSVASQLELQRLHTGRTVPVETAATLLKRMLFRYQGHIGAALVLGGVD-RTGP 545
ADT+ +++ + + V + ++ + ++ L+ Y+ + A++++ G D G
Sbjct: 73 ADTQAIADIAKYHIDVYTMTENKPVTIYRSSQIFRQFLYNYREQLSASVLVAGWDEELGG 132
Query: 546 HIYCIYPHGSVDKLPYATMGSGSLAAMAVFEAGWKRDM 659
+Y I G V + GSGS ++ W+ ++
Sbjct: 133 QVYAIPIGGFVSRQRSTASGSGSTFVQGFLDSQWRPNL 170
>Z81564-1|CAB04567.1| 284|Caenorhabditis elegans Hypothetical
protein K05C4.1 protein.
Length = 284
Score = 72.5 bits (170), Expect = 2e-13
Identities = 46/157 (29%), Positives = 75/157 (47%), Gaps = 8/157 (5%)
Frame = +3
Query: 213 KTGTTIVGIIY-----AD--GVILGADTRATENTVVSDKNCQKIHYLASNMYCCGAGTAA 371
+ GTT + +Y AD G+I+ D+RA+ +S K+ KI + M AG AA
Sbjct: 62 RKGTTTLAFVYEPATPADKGGIIVAVDSRASSGEYISSKSVMKILDIGDRMVATMAGGAA 121
Query: 372 DTEMTTQSVASQLELQRLHTGRTVPVETAATLLKRMLFRYQGH-IGAALVLGGVDRTGPH 548
D + T+ VA L L ++ V A+ L+ Y+G + ++ G D+ GP
Sbjct: 122 DCQFWTRIVAKYCTLYELREKTSITVSAASKYFANTLYGYRGQGLSVGSMVAGYDKKGPQ 181
Query: 549 IYCIYPHGSVDKLPYATMGSGSLAAMAVFEAGWKRDM 659
I+ + G +L ++GSGSL A + + +K M
Sbjct: 182 IFKVDSEGDRCQLKVCSVGSGSLNAYGILDNHYKPKM 218
>U55855-2|AAA98018.1| 204|Caenorhabditis elegans Proteasome beta
subunit protein 3 protein.
Length = 204
Score = 50.8 bits (116), Expect = 8e-07
Identities = 33/151 (21%), Positives = 64/151 (42%), Gaps = 3/151 (1%)
Frame = +3
Query: 216 TGTTIVGIIYADGVILGADTRATENTVVSDKNCQKIHYLASNMYCCGAGTAADTEMTTQS 395
TG T+V + + V + +D R E + +K+H + +Y AG +D +
Sbjct: 7 TGGTVVAMAGDECVCIASDLRIGEQMTTIATDQKKVHKVTDKVYVGLAGFQSDARTVLEK 66
Query: 396 VASQLELQRLHTGRTVPVETAATLLKRMLF--RYQGHIGAALVLGGVDRTGPHIYCIYPH 569
+ + L L R + + + ++ + + R+ + LV G D P+I C+
Sbjct: 67 IMFRKNLYELRENRNIKPQVLSEMISNLAYQHRFGSYFTEPLVAGLDDTNKPYICCMDTI 126
Query: 570 GSVD-KLPYATMGSGSLAAMAVFEAGWKRDM 659
G V + +G+G + V E W+ +M
Sbjct: 127 GCVSAPRDFVAVGTGQEYLLGVCENFWRENM 157
>Z79754-8|CAB02097.1| 248|Caenorhabditis elegans Hypothetical
protein F25H2.9 protein.
Length = 248
Score = 44.8 bits (101), Expect = 6e-05
Identities = 34/148 (22%), Positives = 67/148 (45%), Gaps = 9/148 (6%)
Frame = +3
Query: 198 APKATKTGTTIVGIIYADGVILGADTRATENTVVSDKNCQKIHYLASNMYCCGAGTAADT 377
A +A K G+T +GI ++GV+L A+ R+T +V+D +KI + ++ AG AD+
Sbjct: 27 AIEAVKLGSTSIGIKTSEGVLLAAEKRSTSKLMVNDA-IEKISKVDQHIGVTFAGLIADS 85
Query: 378 EMTTQSVASQLELQRLHTGRTVPVETAATLLKRMLFRY---------QGHIGAALVLGGV 530
+ + + R + VE + + ++ G A++ GV
Sbjct: 86 RTLVERAQIEAQNFWFTYNRKIRVEDVTQSVANLALQFGDDDVKASMSRPFGVAMLFAGV 145
Query: 531 DRTGPHIYCIYPHGSVDKLPYATMGSGS 614
D+ G ++ + P G+ ++G+ S
Sbjct: 146 DQEGAKLFHLDPSGTFIDCKAKSIGAAS 173
>AC006708-4|AAF60416.2| 250|Caenorhabditis elegans Proteasome alpha
subunit protein 3 protein.
Length = 250
Score = 42.7 bits (96), Expect = 2e-04
Identities = 36/157 (22%), Positives = 66/157 (42%), Gaps = 6/157 (3%)
Frame = +3
Query: 198 APKATKTGTTIVGIIYADGVILGADTRATENTVVSDKNCQKIHYLASNMYCCGAGTAADT 377
A +A T +GI+ ++G+++ A+ + + +K++ L+ N+ C AG AD
Sbjct: 24 AMEAISHAGTCLGILSSEGIVVAAERKNVHKLLDDSVMTEKVYRLSDNISCTVAGITADA 83
Query: 378 EMTTQSVASQLELQRLHTGRTVPVETAATLLKRMLFRY-----QGHIGAALVLGGVDR-T 539
+ + R G +PVE L RY + G +L+ G D+
Sbjct: 84 NILINHLRWWAASYRNSYGEEMPVEQLVQNLCNEKQRYTQIGGKRPFGVSLLYIGWDKHY 143
Query: 540 GPHIYCIYPHGSVDKLPYATMGSGSLAAMAVFEAGWK 650
G +Y P G+ +GS AA+ + + +K
Sbjct: 144 GYQLYQSDPSGNYTGWKATCIGSNHQAAVTLLKQEYK 180
>Z80215-2|CAB02269.1| 253|Caenorhabditis elegans Hypothetical
protein C36B1.4 protein.
Length = 253
Score = 42.3 bits (95), Expect = 3e-04
Identities = 29/132 (21%), Positives = 60/132 (45%), Gaps = 6/132 (4%)
Frame = +3
Query: 198 APKATKTGTTIVGIIYADGVILGADTRATENTVVSDKNCQKIHYLASNMYCCGAGTAADT 377
A +A K G+T VG+ D +++G + ++ + D+ +KIH + ++ AG +AD
Sbjct: 23 AQEAVKKGSTAVGVRGKDCIVIGVEKKSIP-ALQDDRTIRKIHMIDDHVMLAFAGLSADA 81
Query: 378 EMTTQSVASQLELQRLHTGRTVPVETAATLLKRMLFRY-----QGHIGAALVLGGVDRTG 542
+ + + +L V V + + R+ + G ++++GG D G
Sbjct: 82 RVLVDRARIECQSYKLTLEDPVTVAYISRYIANTKQRFTQSPGRRPFGISMLIGGFDHDG 141
Query: 543 -PHIYCIYPHGS 575
P ++ P G+
Sbjct: 142 TPRLFKTEPSGA 153
>Z74030-2|CAA98441.1| 231|Caenorhabditis elegans Hypothetical
protein D1054.2 protein.
Length = 231
Score = 36.3 bits (80), Expect = 0.019
Identities = 42/175 (24%), Positives = 72/175 (41%), Gaps = 9/175 (5%)
Frame = +3
Query: 141 GFSFENFQRNAFLAQKGFPAPKATKTGTTIVGIIYADGVILGADTRATEN--TVVSDKNC 314
GFS F + L Q + A A K G VG+ DGV+L ATEN +V++D
Sbjct: 6 GFSLTTFSPSGKLMQIEY-ALNAVKNGQPSVGLRAKDGVVL-----ATENVGSVLTDDQ- 58
Query: 315 QKIHYLASNMYCCGAGTAADTEMTTQSVASQLELQRLHTGRTVPVETAATLLKRMLFRY- 491
K+ ++ ++ C +G D + + + G +P T + ++ Y
Sbjct: 59 PKVEQISKHIGCVYSGMGPDFRILVKKARKIAMEYEMMYGEEMPTIQLVTDIAAVMQEYT 118
Query: 492 -QGHI---GAALVLGGVDRT--GPHIYCIYPHGSVDKLPYATMGSGSLAAMAVFE 638
G + GA+L++ G D+ P ++ P G+ +G + A E
Sbjct: 119 QSGGVRPFGASLLIAGWDKNPGRPLLFQCDPSGAYFAWKATALGKNDVNAKTFLE 173
>AC006749-1|AAV28322.1| 1372|Caenorhabditis elegans Hypothetical
protein Y39D8B.1 protein.
Length = 1372
Score = 31.1 bits (67), Expect = 0.73
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = -3
Query: 325 WIFWQFLSETTVFSVALVSAPRITPSAYIIPTIVVPVLVALGAGNPF 185
WIF L + ++S P I A + P +VP++++ G G PF
Sbjct: 687 WIFVPVLVSPRILGAVILS-PVIMSPAILTPLCMVPIILSPGVGLPF 732
>Z77661-2|CAB01184.4| 265|Caenorhabditis elegans Hypothetical
protein F40G12.2 protein.
Length = 265
Score = 30.7 bits (66), Expect = 0.96
Identities = 10/20 (50%), Positives = 16/20 (80%)
Frame = +3
Query: 294 VVSDKNCQKIHYLASNMYCC 353
V S +NC+K+H+L+SN + C
Sbjct: 210 VKSQENCEKVHFLSSNFWNC 229
>AC006749-2|AAF60533.3| 731|Caenorhabditis elegans Hypothetical
protein Y39D8B.3 protein.
Length = 731
Score = 28.7 bits (61), Expect = 3.9
Identities = 14/47 (29%), Positives = 24/47 (51%)
Frame = -3
Query: 325 WIFWQFLSETTVFSVALVSAPRITPSAYIIPTIVVPVLVALGAGNPF 185
W+F L + A+V +P + + P +VPV+++ G G PF
Sbjct: 596 WVFVPVLVSPRILG-AVVLSPIVFSPVILSPLCLVPVILSPGVGLPF 641
>Z81079-4|CAB03081.1| 236|Caenorhabditis elegans Hypothetical
protein F39H11.5 protein.
Length = 236
Score = 28.3 bits (60), Expect = 5.1
Identities = 16/69 (23%), Positives = 30/69 (43%)
Frame = +3
Query: 210 TKTGTTIVGIIYADGVILGADTRATENTVVSDKNCQKIHYLASNMYCCGAGTAADTEMTT 389
T TGT+++ + Y GV++ D + + KN + + + N+ G AD
Sbjct: 14 TCTGTSVIALQYKTGVVVLTDRVVSYGKMARYKNVSRQYKVNDNVLIAFGGDHADFHWLQ 73
Query: 390 QSVASQLEL 416
+ Q+ L
Sbjct: 74 NVIERQVLL 82
>Z99171-7|CAB16312.1| 188|Caenorhabditis elegans Hypothetical
protein F47G4.8 protein.
Length = 188
Score = 27.5 bits (58), Expect = 9.0
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = -2
Query: 236 TNNCSTGLGGFGCRKP 189
T+ CS GLGGFG +P
Sbjct: 96 TSQCSPGLGGFGVYRP 111
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,314,160
Number of Sequences: 27780
Number of extensions: 322431
Number of successful extensions: 887
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 823
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 885
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1486926498
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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