Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0303
(663 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g27430.2 68416.m03429 20S proteasome beta subunit B (PBB1) id... 254 5e-68
At3g27430.1 68416.m03428 20S proteasome beta subunit B (PBB1) id... 254 5e-68
At5g40580.2 68418.m04925 20S proteasome beta subunit B (PBB2) (P... 253 7e-68
At5g40580.1 68418.m04924 20S proteasome beta subunit B (PBB2) (P... 253 7e-68
At4g31300.1 68417.m04441 20S proteasome beta subunit A (PBA1) (P... 97 9e-21
At3g26340.1 68416.m03286 20S proteasome beta subunit E, putative... 84 9e-17
At1g13060.1 68414.m01514 20S proteasome beta subunit E1 (PBE1) (... 81 6e-16
At2g27020.1 68415.m03244 20S proteasome alpha subunit G (PAG1) (... 59 2e-09
At1g53850.1 68414.m06129 20S proteasome alpha subunit E1 (PAE1) ... 58 4e-09
At3g14290.1 68416.m01808 20S proteasome alpha subunit E2 (PAE2) ... 58 7e-09
At3g60820.1 68416.m06804 20S proteasome beta subunit F1 (PBF1) 51 8e-07
At1g79210.1 68414.m09235 20S proteasome alpha subunit B, putativ... 50 2e-06
At1g16470.1 68414.m01970 20S proteasome alpha subunit B (PAB1) (... 50 2e-06
At3g22110.1 68416.m02791 20S proteasome alpha subunit C (PAC1) (... 46 3e-05
At1g56450.1 68414.m06492 20S proteasome beta subunit G1 (PBG1) (... 40 0.001
At5g42790.1 68418.m05212 20S proteasome alpha subunit F1 (PAF1) ... 36 0.032
At1g47250.1 68414.m05231 20S proteasome alpha subunit F2 (PAF2) ... 36 0.032
At1g79680.1 68414.m09293 wall-associated kinase, putative simila... 29 2.8
At5g04020.1 68418.m00382 calmodulin-binding protein-related (PIC... 28 4.8
At5g23575.1 68418.m02766 transmembrane protein, putative similar... 28 6.4
At5g08500.1 68418.m01007 transmembrane CLPTM1 family protein con... 28 6.4
At1g56500.1 68414.m06497 haloacid dehalogenase-like hydrolase fa... 27 8.4
>At3g27430.2 68416.m03429 20S proteasome beta subunit B (PBB1)
identical to 20S proteasome beta subunit PBB1 (PBB1)
GB:AAC32066 [Arabidopsis thaliana] (Genetics 149 (2),
677-692 (1998)); contains Pfam profile: PF00227
proteasome A-type and B-type;
Length = 273
Score = 254 bits (621), Expect = 5e-68
Identities = 121/185 (65%), Positives = 141/185 (76%)
Frame = +3
Query: 105 MASALVPEIPVPGFSFENFQRNAFLAQKGFPAPKATKTGTTIVGIIYADGVILGADTRAT 284
M+ + V P GFSF+ +RN L QKG AP KTGTTIVG+I+ DGVILGADTRAT
Sbjct: 1 MSQSTVDVPPKGGFSFDLCKRNDMLTQKGLKAPSFLKTGTTIVGLIFKDGVILGADTRAT 60
Query: 285 ENTVVSDKNCQKIHYLASNMYCCGAGTAADTEMTTQSVASQLELQRLHTGRTVPVETAAT 464
E +V+DKNC+KIHY+A N+YCCGAGTAADTE T V+SQL L R TGR V TA T
Sbjct: 61 EGPIVADKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLRLHRYQTGRDSRVITALT 120
Query: 465 LLKRMLFRYQGHIGAALVLGGVDRTGPHIYCIYPHGSVDKLPYATMGSGSLAAMAVFEAG 644
LLK+ LF YQGH+ AALVLGGVD TGPH++ IYPHGS D LP+ATMGSGSLAAM+VFEA
Sbjct: 121 LLKKHLFSYQGHVSAALVLGGVDITGPHLHTIYPHGSTDTLPFATMGSGSLAAMSVFEAK 180
Query: 645 WKRDM 659
+K +
Sbjct: 181 YKEGL 185
>At3g27430.1 68416.m03428 20S proteasome beta subunit B (PBB1)
identical to 20S proteasome beta subunit PBB1 (PBB1)
GB:AAC32066 [Arabidopsis thaliana] (Genetics 149 (2),
677-692 (1998)); contains Pfam profile: PF00227
proteasome A-type and B-type;
Length = 267
Score = 254 bits (621), Expect = 5e-68
Identities = 121/185 (65%), Positives = 141/185 (76%)
Frame = +3
Query: 105 MASALVPEIPVPGFSFENFQRNAFLAQKGFPAPKATKTGTTIVGIIYADGVILGADTRAT 284
M+ + V P GFSF+ +RN L QKG AP KTGTTIVG+I+ DGVILGADTRAT
Sbjct: 1 MSQSTVDVPPKGGFSFDLCKRNDMLTQKGLKAPSFLKTGTTIVGLIFKDGVILGADTRAT 60
Query: 285 ENTVVSDKNCQKIHYLASNMYCCGAGTAADTEMTTQSVASQLELQRLHTGRTVPVETAAT 464
E +V+DKNC+KIHY+A N+YCCGAGTAADTE T V+SQL L R TGR V TA T
Sbjct: 61 EGPIVADKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLRLHRYQTGRDSRVITALT 120
Query: 465 LLKRMLFRYQGHIGAALVLGGVDRTGPHIYCIYPHGSVDKLPYATMGSGSLAAMAVFEAG 644
LLK+ LF YQGH+ AALVLGGVD TGPH++ IYPHGS D LP+ATMGSGSLAAM+VFEA
Sbjct: 121 LLKKHLFSYQGHVSAALVLGGVDITGPHLHTIYPHGSTDTLPFATMGSGSLAAMSVFEAK 180
Query: 645 WKRDM 659
+K +
Sbjct: 181 YKEGL 185
>At5g40580.2 68418.m04925 20S proteasome beta subunit B (PBB2)
(PRCFC) identical to 20S proteasome beta subunit PBB2
[Arabidopsis thaliana] GI:3421104, cDNA proteasome
subunit prcfc GI:2511575
Length = 274
Score = 253 bits (620), Expect = 7e-68
Identities = 121/185 (65%), Positives = 141/185 (76%)
Frame = +3
Query: 105 MASALVPEIPVPGFSFENFQRNAFLAQKGFPAPKATKTGTTIVGIIYADGVILGADTRAT 284
M+ + V P GFSF+ +RN L QKG AP KTGTTIVG+I+ DGVILGADTRAT
Sbjct: 1 MSQSSVDIPPKGGFSFDLCKRNDMLTQKGLKAPSFLKTGTTIVGLIFKDGVILGADTRAT 60
Query: 285 ENTVVSDKNCQKIHYLASNMYCCGAGTAADTEMTTQSVASQLELQRLHTGRTVPVETAAT 464
E +V+DKNC+KIHY+A N+YCCGAGTAADTE T V+SQL L R TGR V TA T
Sbjct: 61 EGPIVADKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLRLHRYQTGRDSRVVTALT 120
Query: 465 LLKRMLFRYQGHIGAALVLGGVDRTGPHIYCIYPHGSVDKLPYATMGSGSLAAMAVFEAG 644
LLK+ LF YQGH+ AALVLGGVD TGPH++ IYPHGS D LP+ATMGSGSLAAM+VFEA
Sbjct: 121 LLKKHLFSYQGHVSAALVLGGVDITGPHLHTIYPHGSTDTLPFATMGSGSLAAMSVFEAK 180
Query: 645 WKRDM 659
+K +
Sbjct: 181 YKEGL 185
>At5g40580.1 68418.m04924 20S proteasome beta subunit B (PBB2)
(PRCFC) identical to 20S proteasome beta subunit PBB2
[Arabidopsis thaliana] GI:3421104, cDNA proteasome
subunit prcfc GI:2511575
Length = 274
Score = 253 bits (620), Expect = 7e-68
Identities = 121/185 (65%), Positives = 141/185 (76%)
Frame = +3
Query: 105 MASALVPEIPVPGFSFENFQRNAFLAQKGFPAPKATKTGTTIVGIIYADGVILGADTRAT 284
M+ + V P GFSF+ +RN L QKG AP KTGTTIVG+I+ DGVILGADTRAT
Sbjct: 1 MSQSSVDIPPKGGFSFDLCKRNDMLTQKGLKAPSFLKTGTTIVGLIFKDGVILGADTRAT 60
Query: 285 ENTVVSDKNCQKIHYLASNMYCCGAGTAADTEMTTQSVASQLELQRLHTGRTVPVETAAT 464
E +V+DKNC+KIHY+A N+YCCGAGTAADTE T V+SQL L R TGR V TA T
Sbjct: 61 EGPIVADKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLRLHRYQTGRDSRVVTALT 120
Query: 465 LLKRMLFRYQGHIGAALVLGGVDRTGPHIYCIYPHGSVDKLPYATMGSGSLAAMAVFEAG 644
LLK+ LF YQGH+ AALVLGGVD TGPH++ IYPHGS D LP+ATMGSGSLAAM+VFEA
Sbjct: 121 LLKKHLFSYQGHVSAALVLGGVDITGPHLHTIYPHGSTDTLPFATMGSGSLAAMSVFEAK 180
Query: 645 WKRDM 659
+K +
Sbjct: 181 YKEGL 185
>At4g31300.1 68417.m04441 20S proteasome beta subunit A (PBA1)
(PRCD) identical to cDNA proteasome subunit prcd
GI:2511593
Length = 233
Score = 97.1 bits (231), Expect = 9e-21
Identities = 50/148 (33%), Positives = 83/148 (56%), Gaps = 1/148 (0%)
Frame = +3
Query: 219 GTTIVGIIYADGVILGADTRATENTVVSDKNCQKIHYLASNMYCCGAGTAADTEMTTQSV 398
GTTI+G+ Y GV+LGAD+R + V+++ KI L N+Y C +G+AAD+++ + V
Sbjct: 12 GTTIIGVTYNGGVVLGADSRTSTGMYVANRASDKITQLTDNVYVCRSGSAADSQVVSDYV 71
Query: 399 ASQLELQRLHTGRTVPVETAATLLKRMLFRYQGHIGAALVLGGVDR-TGPHIYCIYPHGS 575
L + G+ V+ +A L++ + + + + L++GG D+ G IY I G+
Sbjct: 72 RYFLHQHTIQHGQPATVKVSANLIRMLAYNNKNMLQTGLIVGGWDKYEGGKIYGIPLGGT 131
Query: 576 VDKLPYATMGSGSLAAMAVFEAGWKRDM 659
V + P+A GSGS F+ WK +M
Sbjct: 132 VVEQPFAIGGSGSSYLYGFFDQAWKDNM 159
>At3g26340.1 68416.m03286 20S proteasome beta subunit E, putative
very strong similarity to SP|O23717 Proteasome subunit
beta type 5 precursor (EC 3.4.25.1) (20S proteasome
subunit E) (Proteasome epsilon chain) {Arabidopsis
thaliana}
Length = 273
Score = 83.8 bits (198), Expect = 9e-17
Identities = 61/194 (31%), Positives = 97/194 (50%), Gaps = 4/194 (2%)
Frame = +3
Query: 93 SNHEMASAL--VPEIPVPGFS-FENFQRNAFLAQKGFPAPKATKTGTTIVGIIYADGVIL 263
SN EM P +P + F+ FQ+ A K PA GTT + I+ +GV++
Sbjct: 19 SNSEMLDGFSSAPSFDLPRTTDFDGFQKKAVEMVK--PAK-----GTTTLAFIFKEGVMV 71
Query: 264 GADTRATENTVVSDKNCQKIHYLASNMYCCGAGTAADTEMTTQSVASQLELQRLHTGRTV 443
AD+RA+ +S ++ +KI + M AG AAD + +++ + L L R +
Sbjct: 72 AADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRI 131
Query: 444 PVETAATLLKRMLFRYQG-HIGAALVLGGVDRTGPHIYCIYPHGSVDKLPYATMGSGSLA 620
V A+ LL ML+ Y+G + ++ G D TGP +Y + G K ++GSGS
Sbjct: 132 SVSGASKLLANMLYSYRGMGLSVGTMIAGWDETGPGLYYVDNEGGRLKGDRFSVGSGSPY 191
Query: 621 AMAVFEAGWKRDMN 662
A V ++G+K DM+
Sbjct: 192 AYGVLDSGYKFDMS 205
>At1g13060.1 68414.m01514 20S proteasome beta subunit E1 (PBE1)
(PRCE) identical to GB:O23717; identical to cDNA
proteasome subunit prce GI:2511595
Length = 274
Score = 81.0 bits (191), Expect = 6e-16
Identities = 54/177 (30%), Positives = 87/177 (49%), Gaps = 1/177 (0%)
Frame = +3
Query: 135 VPGFSFENFQRNAFLAQKGFPAPKATKTGTTIVGIIYADGVILGADTRATENTVVSDKNC 314
VP F + +K K K GTT + I+ GV++ AD+RA+ +S ++
Sbjct: 30 VPSFDLPRTKEFDGFQKKAKDMLKHAK-GTTTLAFIFKGGVMVAADSRASMGGYISSQSV 88
Query: 315 QKIHYLASNMYCCGAGTAADTEMTTQSVASQLELQRLHTGRTVPVETAATLLKRMLFRYQ 494
+KI + M AG AAD + +++ + L L R + V A+ LL ML+ Y+
Sbjct: 89 KKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVSGASKLLANMLYSYR 148
Query: 495 G-HIGAALVLGGVDRTGPHIYCIYPHGSVDKLPYATMGSGSLAAMAVFEAGWKRDMN 662
G + ++ G D TGP +Y + G K ++GSGS A V ++G+K DM+
Sbjct: 149 GMGLSVGTMIAGWDETGPGLYYVDNEGGRLKGDRFSVGSGSPYAYGVLDSGYKYDMS 205
>At2g27020.1 68415.m03244 20S proteasome alpha subunit G (PAG1)
(PRC8) identical to proteasome subunit alpha type 3
SP:O23715, GI:12644056 from [Arabidopsis thaliana];
identical to cDNA proteasome subunit prc8 GI:2511591
Length = 249
Score = 59.3 bits (137), Expect = 2e-09
Identities = 43/152 (28%), Positives = 65/152 (42%), Gaps = 5/152 (3%)
Frame = +3
Query: 198 APKATKTGTTIVGIIYADGVILGADTRATENTVVSDKNCQKIHYLASNMYCCGAGTAADT 377
A KA T+VGI DG+++G + ++ N ++IH + + AG AAD
Sbjct: 27 AAKAVDNSGTVVGIKCKDGIVMGVEKLIASKMMLPGSN-RRIHSVHRHAGMAVAGLAADG 85
Query: 378 EMTTQSVASQLELQRLHTGRTVPVE-----TAATLLKRMLFRYQGHIGAALVLGGVDRTG 542
S+ G VPV+ A+ + L+ + G ++LGG DR G
Sbjct: 86 RQIVARAKSEARSYESVYGDAVPVKELSERVASYVHLCTLYWWLRPFGCGVILGGYDRDG 145
Query: 543 PHIYCIYPHGSVDKLPYATMGSGSLAAMAVFE 638
P +Y I P G + A +G G AA E
Sbjct: 146 PQLYMIEPSGISYRYFGAAIGKGKQAAKTEIE 177
>At1g53850.1 68414.m06129 20S proteasome alpha subunit E1 (PAE1)
identical to 20S proteasome subunit PAE1 GI:3421087 from
[Arabidopsis thaliana]
Length = 237
Score = 58.4 bits (135), Expect = 4e-09
Identities = 39/163 (23%), Positives = 76/163 (46%), Gaps = 8/163 (4%)
Frame = +3
Query: 198 APKATKTGTTIVGIIYADGVILGADTRATENTVVSDKNCQKIHYLASNMYCCGAGTAADT 377
A +A K G+T +G+ +GV+L + R T + ++ + +KI + ++ C +G AD
Sbjct: 27 AIEAIKLGSTAIGVKTKEGVVLAVEKRIT-SPLLEPSSVEKIMEIDDHIGCAMSGLIADA 85
Query: 378 EMTTQSVASQLELQRLHTGRTVPVETAATLLKRMLFRY-QGH-------IGAALVLGGVD 533
+ + + R G + VE+ L + R+ +G G +L++ G D
Sbjct: 86 RTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGEEESMSRPFGVSLLIAGHD 145
Query: 534 RTGPHIYCIYPHGSVDKLPYATMGSGSLAAMAVFEAGWKRDMN 662
GP +Y P G+ + +GSGS A + + + +D++
Sbjct: 146 ENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQFNKDLS 188
>At3g14290.1 68416.m01808 20S proteasome alpha subunit E2 (PAE2)
identical to 20S proteasome subunit PAE2 GB:AAC32061
from [Arabidopsis thaliana]
Length = 237
Score = 57.6 bits (133), Expect = 7e-09
Identities = 39/162 (24%), Positives = 75/162 (46%), Gaps = 8/162 (4%)
Frame = +3
Query: 198 APKATKTGTTIVGIIYADGVILGADTRATENTVVSDKNCQKIHYLASNMYCCGAGTAADT 377
A +A K G+T +G+ +GV+L + R T + ++ + +KI + ++ C +G AD
Sbjct: 27 AIEAIKLGSTAIGVKTKEGVVLAVEKRIT-SPLLEPSSVEKIMEIDDHIGCAMSGLIADA 85
Query: 378 EMTTQSVASQLELQRLHTGRTVPVETAATLLKRMLFRY-QGH-------IGAALVLGGVD 533
+ + + R G + VE+ L + R+ +G G +L++ G D
Sbjct: 86 RTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGEEESMSRPFGVSLLIAGHD 145
Query: 534 RTGPHIYCIYPHGSVDKLPYATMGSGSLAAMAVFEAGWKRDM 659
GP +Y P G+ + +GSGS A + + + +D+
Sbjct: 146 ENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQFNKDI 187
>At3g60820.1 68416.m06804 20S proteasome beta subunit F1 (PBF1)
Length = 223
Score = 50.8 bits (116), Expect = 8e-07
Identities = 40/140 (28%), Positives = 62/140 (44%), Gaps = 4/140 (2%)
Frame = +3
Query: 219 GTTIVGIIYADGVILGADTRATENTVVSDKNCQKIHYLASNMYCCGAGTAADTEMTTQSV 398
G T V I +D ++ ADTR + + ++ KIH LA +G AD + + +
Sbjct: 15 GGTCVAIAGSDYCVIAADTRMSTGYSILSRDYSKIHKLADRAVLSSSGFQADVKALQKVL 74
Query: 399 ASQ-LELQRLHTGRTVPVETAATLLKRMLFRYQGHIGAALVLGGVDRTGPHIYCIYPH-- 569
S+ L Q H + A L + F+ A VLGG+D G C++ +
Sbjct: 75 KSRHLIYQHQHNKQMSCPAMAQLLSNTLYFKRFFPYYAFNVLGGLDEEGKG--CVFTYDA 132
Query: 570 -GSVDKLPYATMGSGSLAAM 626
GS +++ Y GSGS M
Sbjct: 133 VGSYERVGYGAQGSGSTLIM 152
>At1g79210.1 68414.m09235 20S proteasome alpha subunit B, putative
nearly identical to SP|O23708 Proteasome subunit alpha
type 2 (EC 3.4.25.1) (20S proteasome alpha subunit B)
{Arabidopsis thaliana} and to At1g16470
Length = 235
Score = 49.6 bits (113), Expect = 2e-06
Identities = 45/179 (25%), Positives = 75/179 (41%), Gaps = 7/179 (3%)
Frame = +3
Query: 144 FSFENFQRNAFLAQKGFPAPKATKTGTTIVGIIYADGVILGADTRATENTVVSDKNCQKI 323
FS F + L Q A A +G T +GI ++GV++ + + + +V + + QKI
Sbjct: 8 FSLTTFSPSGKLVQIEH-ALTAVGSGQTSLGIKASNGVVIATEKKLP-SILVDEASVQKI 65
Query: 324 HYLASNMYCCGAGTAADTEMTTQSVASQLELQRLHTGRTVPV----ETAATLLKRMLFRY 491
+L N+ +G D + + Q E +PV AT+++ F
Sbjct: 66 QHLTPNIGTVYSGMGPDFRVLVRKSRKQAEQYLRLYKEPIPVTQLVRETATVMQE--FTQ 123
Query: 492 QGHI---GAALVLGGVDRTGPHIYCIYPHGSVDKLPYATMGSGSLAAMAVFEAGWKRDM 659
G + G +L++ G D GP +Y + P GS + MG A E + DM
Sbjct: 124 SGGVRPFGVSLLVAGYDDKGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYTEDM 182
>At1g16470.1 68414.m01970 20S proteasome alpha subunit B (PAB1)
(PRC3) identical to proteasome subunit alpha type 2
SP:O23708, GI:6093778; identical to cDNA proteasome
subunit prc3 GI:2511573
Length = 235
Score = 49.6 bits (113), Expect = 2e-06
Identities = 45/179 (25%), Positives = 75/179 (41%), Gaps = 7/179 (3%)
Frame = +3
Query: 144 FSFENFQRNAFLAQKGFPAPKATKTGTTIVGIIYADGVILGADTRATENTVVSDKNCQKI 323
FS F + L Q A A +G T +GI ++GV++ + + + +V + + QKI
Sbjct: 8 FSLTTFSPSGKLVQIEH-ALTAVGSGQTSLGIKASNGVVIATEKKLP-SILVDEASVQKI 65
Query: 324 HYLASNMYCCGAGTAADTEMTTQSVASQLELQRLHTGRTVPV----ETAATLLKRMLFRY 491
+L N+ +G D + + Q E +PV AT+++ F
Sbjct: 66 QHLTPNIGVVYSGMGPDFRVLVRKSRKQAEQYLRLYKEPIPVTQLVRETATVMQE--FTQ 123
Query: 492 QGHI---GAALVLGGVDRTGPHIYCIYPHGSVDKLPYATMGSGSLAAMAVFEAGWKRDM 659
G + G +L++ G D GP +Y + P GS + MG A E + DM
Sbjct: 124 SGGVRPFGVSLLVAGYDDKGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYTEDM 182
>At3g22110.1 68416.m02791 20S proteasome alpha subunit C (PAC1)
(PRC9) identical to GB:AAC32057 from [Arabidopsis
thaliana] (Genetics (1998) 149 (2), 677-692); identical
to cDNA proteasome subunit prc9 GI:2511583
Length = 250
Score = 45.6 bits (103), Expect = 3e-05
Identities = 34/159 (21%), Positives = 70/159 (44%), Gaps = 6/159 (3%)
Frame = +3
Query: 198 APKATKTGTTIVGIIYADGVILGADTRATENTVVSDKNCQKIHYLASNMYCCGAGTAADT 377
A +A + +GI+ DGV+L + + T + + + +K++ + ++ C AG +D
Sbjct: 24 AMEAIGNAGSAIGILSKDGVVLIGEKKVTSKLLQTSTSAEKMYKIDDHVACAVAGIMSDA 83
Query: 378 EMTTQSVASQLELQRLHTGRTVPVETAATLL---KRMLFRYQG--HIGAALVLGGVDR-T 539
+ + Q + +PVE L K+ ++ G G + + G D+
Sbjct: 84 NILINTARVQAQRYTFMYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKHH 143
Query: 540 GPHIYCIYPHGSVDKLPYATMGSGSLAAMAVFEAGWKRD 656
G +Y P G+ A +G+ + AA ++ + +K D
Sbjct: 144 GFQLYMSDPSGNYGGWKAAAVGANNQAAQSILKQDYKDD 182
>At1g56450.1 68414.m06492 20S proteasome beta subunit G1 (PBG1)
(PRCH) identical to 20S proteasome beta subunit (PBG1)
GI:3421123 [Arabidopsis thaliana]; identical to cDNA
proteasome subunit prch GI:2511597
Length = 246
Score = 39.9 bits (89), Expect = 0.001
Identities = 32/153 (20%), Positives = 63/153 (41%), Gaps = 4/153 (2%)
Frame = +3
Query: 216 TGTTIVGIIYADGVILGADTRATENTVVSDKNCQKIHYLASNMYCCGAGTAAD-TEMTTQ 392
TGT+IV I Y DGV++ +D + + + KN +++ + + +G +D E+
Sbjct: 30 TGTSIVAIKYKDGVLMASDMGGSYGSTLRYKNIERVKAIGKHSLLGASGEISDFQEILRY 89
Query: 393 SVASQLELQRLHTGRTVPVETAATLLKRMLFRYQGHIGA---ALVLGGVDRTGPHIYCIY 563
L G ++ + L R+++ + LVLGGV ++ +
Sbjct: 90 LDELTLNDNMWDDGNSLGPKEIHNYLTRVMYNRRNKFNPLWNTLVLGGVKNGKSYLGMVS 149
Query: 564 PHGSVDKLPYATMGSGSLAAMAVFEAGWKRDMN 662
G + + G G+ A + W D++
Sbjct: 150 MIGVSFEDDHVATGFGNHLARPILRDEWHADLS 182
>At5g42790.1 68418.m05212 20S proteasome alpha subunit F1 (PAF1)
(gb|AAC32062.1)
Length = 278
Score = 35.5 bits (78), Expect = 0.032
Identities = 35/150 (23%), Positives = 58/150 (38%), Gaps = 3/150 (2%)
Frame = +3
Query: 198 APKATKTGTTIVGIIYADGVILGADTRATENTVVSDKNCQKI--HYLASNMYCCGAGTAA 371
A +A K G+ +G+ V+L +A + K+ H + G
Sbjct: 25 AMEAVKQGSAAIGLRSRSHVVLACVNKAQSELSSHQRKIFKVDDHIGVAIAGLTADGRVL 84
Query: 372 DTEMTTQSVASQLELQR-LHTGRTVPVETAATLLKRMLFRYQGHIGAALVLGGVDRTGPH 548
M ++S+ + L GR V V A ++ G L++GG+D +G H
Sbjct: 85 SRYMRSESINHSFTYESPLPVGRLV-VHLADKAQVCTQRSWKRPYGVGLLVGGLDESGAH 143
Query: 549 IYCIYPHGSVDKLPYATMGSGSLAAMAVFE 638
+Y P G+ + +GS S AA E
Sbjct: 144 LYYNCPSGNYFEYQAFAIGSRSQAAKTYLE 173
>At1g47250.1 68414.m05231 20S proteasome alpha subunit F2 (PAF2)
(PRC2B) (PRS1) identical to GB:AAC32063 from
[Arabidopsis thaliana] (Genetics 149 (2), 677-692
(1998)); identical to cDNA proteasome subunit prc2b
GI:2511585
Length = 277
Score = 35.5 bits (78), Expect = 0.032
Identities = 35/150 (23%), Positives = 58/150 (38%), Gaps = 3/150 (2%)
Frame = +3
Query: 198 APKATKTGTTIVGIIYADGVILGADTRATENTVVSDKNCQKI--HYLASNMYCCGAGTAA 371
A +A K G+ +G+ V+L +A + K+ H + G
Sbjct: 25 AMEAVKQGSAAIGLRSRSHVVLACVNKAQSELSSHQRKIFKVDDHIGVAIAGLTADGRVL 84
Query: 372 DTEMTTQSVASQLELQR-LHTGRTVPVETAATLLKRMLFRYQGHIGAALVLGGVDRTGPH 548
M ++S+ + L GR V V A ++ G L++GG+D +G H
Sbjct: 85 SRYMRSESINHSFTYESPLPVGRLV-VHLADKAQVCTQRSWKRPYGVGLLVGGLDESGAH 143
Query: 549 IYCIYPHGSVDKLPYATMGSGSLAAMAVFE 638
+Y P G+ + +GS S AA E
Sbjct: 144 LYYNCPSGNYFEYQAFAIGSRSQAAKTYLE 173
>At1g79680.1 68414.m09293 wall-associated kinase, putative similar
to wall-associated kinase 2 GI:4826399 from [Arabidopsis
thaliana]
Length = 769
Score = 29.1 bits (62), Expect = 2.8
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = -2
Query: 341 VGC*VVDFLAVFVRDNCIFSGSCVSS*NNAVCVYYTNNCSTGLGG 207
+GC +D + RDN + C+ N+ Y T +C++G G
Sbjct: 269 LGCKSIDEYTILRRDNREYGIGCLCDYNSTTTGYATCSCASGFEG 313
>At5g04020.1 68418.m00382 calmodulin-binding protein-related (PICBP)
contains similarity to potato calmodulin-binding protein
PCBP GI:17933110 from [Solanum tuberosum]
Length = 1495
Score = 28.3 bits (60), Expect = 4.8
Identities = 21/85 (24%), Positives = 38/85 (44%), Gaps = 4/85 (4%)
Frame = +3
Query: 276 RATENTVVSDKNCQKIHYLASNMYCCGAGT----AADTEMTTQSVASQLELQRLHTGRTV 443
+AT ++ + + ++ + + + YC G AAD S+ + ++R R
Sbjct: 210 KATCSSAMKGSSSKRSNDVCTYRYCSLHGRRHSHAADNNAGVPSLKRFVSMRRKFMNRQK 269
Query: 444 PVETAATLLKRMLFRYQGHIGAALV 518
V LLKR L R +G +G +V
Sbjct: 270 SVNRRLVLLKRTLSRKRGPLGGRVV 294
>At5g23575.1 68418.m02766 transmembrane protein, putative similar to
cleft lip and palate transmembrane protein 1 [Homo
sapiens] GI:4039014; contains Pfam profile PF05602:
Cleft lip and palate transmembrane protein 1 (CLPTM1)
Length = 593
Score = 27.9 bits (59), Expect = 6.4
Identities = 15/31 (48%), Positives = 21/31 (67%), Gaps = 5/31 (16%)
Frame = -1
Query: 399 QQIVLSFQCQL---LFLLHNNTCWML--SSG 322
+ +VL+F CQ L+LL N+T WM+ SSG
Sbjct: 368 KSVVLNFICQFVIFLYLLDNDTSWMILASSG 398
>At5g08500.1 68418.m01007 transmembrane CLPTM1 family protein
contains Pfam profile PF05602: Cleft lip and palate
transmembrane protein 1 (CLPTM1)
Length = 590
Score = 27.9 bits (59), Expect = 6.4
Identities = 15/31 (48%), Positives = 21/31 (67%), Gaps = 5/31 (16%)
Frame = -1
Query: 399 QQIVLSFQCQL---LFLLHNNTCWML--SSG 322
+ +VL+F CQ L+LL N+T WM+ SSG
Sbjct: 366 KSVVLNFICQFIIFLYLLDNDTSWMILASSG 396
>At1g56500.1 68414.m06497 haloacid dehalogenase-like hydrolase
family protein low similarity to SP|P95649 CbbY protein
{Rhodobacter sphaeroides}; contains InterPro accession
IPR005834: Haloacid dehalogenase-like hydrolase
Length = 1055
Score = 27.5 bits (58), Expect = 8.4
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = +2
Query: 413 VAALTYWTYCTCRNCCH 463
V L +WTYC C NC H
Sbjct: 421 VVILDFWTYC-CINCMH 436
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,366,570
Number of Sequences: 28952
Number of extensions: 295440
Number of successful extensions: 792
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 771
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 786
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1393347168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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