Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0302
         (656 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bomb...    34   3.5  
UniRef50_Q9C2A3 Cluster: Related to nuclear migration protein am...    33   6.0  

>UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bombyx
           mori (Silk moth)
          Length = 782

 Score = 33.9 bits (74), Expect = 3.5
 Identities = 12/14 (85%), Positives = 13/14 (92%)
 Frame = -1

Query: 506 WYPPARTHKRSYHQ 465
           WY PARTHKRSYH+
Sbjct: 572 WYLPARTHKRSYHR 585


>UniRef50_Q9C2A3 Cluster: Related to nuclear migration protein ami1;
           n=1; Neurospora crassa|Rep: Related to nuclear migration
           protein ami1 - Neurospora crassa
          Length = 1398

 Score = 33.1 bits (72), Expect = 6.0
 Identities = 13/25 (52%), Positives = 18/25 (72%)
 Frame = -2

Query: 517 RQGDGIHPRGLTRGPTTSNSLRKLK 443
           R  +GIH RG +RGP  +NS+RK +
Sbjct: 872 RSNEGIHRRGSSRGPYRANSIRKAR 896


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 689,399,499
Number of Sequences: 1657284
Number of extensions: 14079357
Number of successful extensions: 30357
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 29513
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30353
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 49586781480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)