Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0302
         (656 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1347.09 |||hexaprenyldihydroxybenzoate methyltransferase|Sch...    27   2.4  
SPBC1289.13c |||alpha-1,2-galactosyltransferase|Schizosaccharomy...    27   3.1  
SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase Wis4|Schizo...    27   3.1  
SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyce...    26   5.5  

>SPBC1347.09 |||hexaprenyldihydroxybenzoate
           methyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 284

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 15/34 (44%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
 Frame = -3

Query: 285 HQDRWASKGSARRGGITTQS--NCFANESTTGSE 190
           H D  A  G A  GG T QS  N F N S + +E
Sbjct: 200 HPDEIAKLGVAHHGGFTPQSILNLFKNASLSNAE 233


>SPBC1289.13c |||alpha-1,2-galactosyltransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 375

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = -2

Query: 562 PHPSNRNALLLHGRNRQGDGIHP 494
           PHP N   +LL G N Q D   P
Sbjct: 97  PHPENSKIVLLMGSNAQNDPSSP 119


>SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase
           Wis4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1401

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +3

Query: 360 NYFSTPRKAPVTYTAVKWLMVLCD 431
           +Y+ T  K  +T  AV+W+  +CD
Sbjct: 864 SYWQTKLKRKITSLAVEWISFICD 887


>SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 496

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = +1

Query: 502 YHHPAYFCREAVMRFGLKGGAAVVTILEILELISQGG 612
           +  P+ F  E V+   L GG AVV +   LE I Q G
Sbjct: 87  FKKPSSFTGEDVVELQLHGGTAVVDV--TLEAIKQSG 121


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,758,405
Number of Sequences: 5004
Number of extensions: 55483
Number of successful extensions: 112
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)