Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0302
         (656 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_1128 - 26341118-26341204,26341302-26341441,26341567-263416...    29   2.5  
05_06_0096 + 25513535-25514024,25514139-25514236,25514395-255147...    29   3.3  
03_05_0488 - 24847076-24847220,24847823-24847872,24848139-248482...    29   3.3  
03_06_0060 + 31341233-31342009,31342752-31342871,31343401-313435...    28   5.7  

>12_02_1128 -
           26341118-26341204,26341302-26341441,26341567-26341663,
           26341755-26341830,26341919-26342118,26342199-26342297,
           26342395-26342479,26342786-26343024,26343233-26343403,
           26343605-26343848,26343980-26344253,26344755-26344934,
           26345342-26345423,26346209-26346278,26346802-26346901,
           26347003-26347097,26347181-26347317,26347342-26347420,
           26347591-26347651,26348580-26349009
          Length = 981

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 25/74 (33%), Positives = 36/74 (48%)
 Frame = +3

Query: 285 ETGKAAGPPVILQS*KNQIEKTNRHNYFSTPRKAPVTYTAVKWLMVLCDRYMYLSFLKLL 464
           ETG A G  ++ Q   +Q E   R   + TP  A    TA + L+   DR M ++ +   
Sbjct: 590 ETGGALGG-MVRQLSIDQFENEGRRVIYGTPESA----TAARKLL---DRQMSINSVPKK 641

Query: 465 LVVGPLVSPRGWIP 506
            V+  L+ PRGW P
Sbjct: 642 -VIASLLKPRGWKP 654


>05_06_0096 +
           25513535-25514024,25514139-25514236,25514395-25514783,
           25515485-25515599,25515816-25515917,25516584-25516734,
           25517162-25517250,25517518-25517566,25517723-25517763,
           25517929-25518116,25518285-25518402,25518900-25519079,
           25519172-25519294,25519368-25519455,25519549-25519679,
           25519768-25519866,25520822-25521253
          Length = 960

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 24/66 (36%), Positives = 32/66 (48%)
 Frame = -1

Query: 419 HQPFDCCVGHRCLTRRTEVIMSICLFDLVFL*LKDYWWPSSLSSFTRTGGRAKAQPGGVE 240
           H PF     +R L  R+E++ S+   DLV     DY     +S+ TR  G  +  P GVE
Sbjct: 297 HTPFPSSEIYRTLPSRSELLRSVLCADLVGFHTYDY-ARHFVSACTRILG-LEGTPEGVE 354

Query: 239 LQLRAT 222
            Q R T
Sbjct: 355 DQGRLT 360


>03_05_0488 -
           24847076-24847220,24847823-24847872,24848139-24848278,
           24848358-24848493,24848584-24848683,24848837-24848949,
           24849034-24849132,24849227-24849311,24849799-24850037,
           24850202-24850372,24850544-24850784,24850899-24851172,
           24851481-24851660,24852170-24852251,24852336-24852437,
           24853315-24853384,24853725-24853824,24853931-24854025,
           24854105-24854184,24854361-24854439,24854603-24854663,
           24855570-24855984
          Length = 1018

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 25/74 (33%), Positives = 36/74 (48%)
 Frame = +3

Query: 285 ETGKAAGPPVILQS*KNQIEKTNRHNYFSTPRKAPVTYTAVKWLMVLCDRYMYLSFLKLL 464
           ETG A G  ++ Q   +Q E   R   + TP  A    TA + L+   DR M ++ +   
Sbjct: 599 ETGGALGG-MVRQLSIDQFENEGRRVSYGTPENA----TAARKLL---DRQMSINSVPKK 650

Query: 465 LVVGPLVSPRGWIP 506
            V+  L+ PRGW P
Sbjct: 651 -VIASLLKPRGWKP 663


>03_06_0060 +
           31341233-31342009,31342752-31342871,31343401-31343517,
           31343615-31343704,31344279-31344386,31345124-31345306
          Length = 464

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 4/41 (9%)
 Frame = -1

Query: 272 GRAKAQPGGVELQLR----ATASRMNLLPDPNRDPLRNSAG 162
           GRA++ P G+ +  R    A ASR N L DP+   + +S+G
Sbjct: 100 GRARSSPKGMSVPARFLQDAAASRPNRLADPSTPFMTHSSG 140


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,109,829
Number of Sequences: 37544
Number of extensions: 412097
Number of successful extensions: 920
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 909
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 920
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)