Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0302
         (656 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U13019-11|AAC24449.1|  445|Caenorhabditis elegans Hypothetical p...    30   1.7  
Z68749-7|CAA92962.2|  728|Caenorhabditis elegans Hypothetical pr...    29   3.8  
Z68749-6|CAC35818.1|  689|Caenorhabditis elegans Hypothetical pr...    29   3.8  
Z68749-5|CAC35817.1|  712|Caenorhabditis elegans Hypothetical pr...    29   3.8  
Z68219-9|CAA92483.2|  728|Caenorhabditis elegans Hypothetical pr...    29   3.8  
Z68219-7|CAC35827.1|  689|Caenorhabditis elegans Hypothetical pr...    29   3.8  
Z68219-6|CAC35826.1|  712|Caenorhabditis elegans Hypothetical pr...    29   3.8  
AY851363-1|AAW34127.1|  728|Caenorhabditis elegans fibulin-1D sp...    29   3.8  
AF070477-1|AAC24035.1|  589|Caenorhabditis elegans fibulin-1D pr...    29   3.8  
AF051403-2|AAC28323.1|  712|Caenorhabditis elegans fibulin-1 iso...    29   3.8  
AF051403-1|AAC28324.1|  689|Caenorhabditis elegans fibulin-1 iso...    29   3.8  
AF051402-1|AAC28322.1|  712|Caenorhabditis elegans fibulin-1 iso...    29   3.8  
AF051401-1|AAC28321.1|  689|Caenorhabditis elegans fibulin-1 iso...    29   3.8  
AB212860-1|BAD98165.1|  712|Caenorhabditis elegans fibulin-1C pr...    29   3.8  

>U13019-11|AAC24449.1|  445|Caenorhabditis elegans Hypothetical
           protein T12A2.1 protein.
          Length = 445

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 18/52 (34%), Positives = 25/52 (48%)
 Frame = -1

Query: 302 SSLSSFTRTGGRAKAQPGGVELQLRATASRMNLLPDPNRDPLRNSAG*CMGS 147
           S L   +  G R  AQ G V + L +TA  + L P P R  + N+    +GS
Sbjct: 302 SHLEEISDKGIRGMAQAGSVAVLLPSTAFILRLTPPPARKLIENNVIVALGS 353


>Z68749-7|CAA92962.2|  728|Caenorhabditis elegans Hypothetical
           protein F56H11.1c protein.
          Length = 728

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = +2

Query: 128 RTLITRSNPCISPLSFSAG 184
           + L+ R+ PC++P+ FSAG
Sbjct: 102 KDLLNRNEPCVAPVGFSAG 120


>Z68749-6|CAC35818.1|  689|Caenorhabditis elegans Hypothetical
           protein F56H11.1b protein.
          Length = 689

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = +2

Query: 128 RTLITRSNPCISPLSFSAG 184
           + L+ R+ PC++P+ FSAG
Sbjct: 102 KDLLNRNEPCVAPVGFSAG 120


>Z68749-5|CAC35817.1|  712|Caenorhabditis elegans Hypothetical
           protein F56H11.1a protein.
          Length = 712

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = +2

Query: 128 RTLITRSNPCISPLSFSAG 184
           + L+ R+ PC++P+ FSAG
Sbjct: 102 KDLLNRNEPCVAPVGFSAG 120


>Z68219-9|CAA92483.2|  728|Caenorhabditis elegans Hypothetical
           protein F56H11.1c protein.
          Length = 728

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = +2

Query: 128 RTLITRSNPCISPLSFSAG 184
           + L+ R+ PC++P+ FSAG
Sbjct: 102 KDLLNRNEPCVAPVGFSAG 120


>Z68219-7|CAC35827.1|  689|Caenorhabditis elegans Hypothetical
           protein F56H11.1b protein.
          Length = 689

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = +2

Query: 128 RTLITRSNPCISPLSFSAG 184
           + L+ R+ PC++P+ FSAG
Sbjct: 102 KDLLNRNEPCVAPVGFSAG 120


>Z68219-6|CAC35826.1|  712|Caenorhabditis elegans Hypothetical
           protein F56H11.1a protein.
          Length = 712

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = +2

Query: 128 RTLITRSNPCISPLSFSAG 184
           + L+ R+ PC++P+ FSAG
Sbjct: 102 KDLLNRNEPCVAPVGFSAG 120


>AY851363-1|AAW34127.1|  728|Caenorhabditis elegans fibulin-1D
           splice variant protein.
          Length = 728

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = +2

Query: 128 RTLITRSNPCISPLSFSAG 184
           + L+ R+ PC++P+ FSAG
Sbjct: 102 KDLLNRNEPCVAPVGFSAG 120


>AF070477-1|AAC24035.1|  589|Caenorhabditis elegans fibulin-1D
           precursor protein.
          Length = 589

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = +2

Query: 128 RTLITRSNPCISPLSFSAG 184
           + L+ R+ PC++P+ FSAG
Sbjct: 1   KDLLNRNEPCVAPVGFSAG 19


>AF051403-2|AAC28323.1|  712|Caenorhabditis elegans fibulin-1
           isoform C precursor protein.
          Length = 712

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = +2

Query: 128 RTLITRSNPCISPLSFSAG 184
           + L+ R+ PC++P+ FSAG
Sbjct: 102 KDLLNRNEPCVAPVGFSAG 120


>AF051403-1|AAC28324.1|  689|Caenorhabditis elegans fibulin-1
           isoform D precursor protein.
          Length = 689

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = +2

Query: 128 RTLITRSNPCISPLSFSAG 184
           + L+ R+ PC++P+ FSAG
Sbjct: 102 KDLLNRNEPCVAPVGFSAG 120


>AF051402-1|AAC28322.1|  712|Caenorhabditis elegans fibulin-1
           isoform C precursor protein.
          Length = 712

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = +2

Query: 128 RTLITRSNPCISPLSFSAG 184
           + L+ R+ PC++P+ FSAG
Sbjct: 102 KDLLNRNEPCVAPVGFSAG 120


>AF051401-1|AAC28321.1|  689|Caenorhabditis elegans fibulin-1
           isoform D precursor protein.
          Length = 689

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = +2

Query: 128 RTLITRSNPCISPLSFSAG 184
           + L+ R+ PC++P+ FSAG
Sbjct: 102 KDLLNRNEPCVAPVGFSAG 120


>AB212860-1|BAD98165.1|  712|Caenorhabditis elegans fibulin-1C
           protein.
          Length = 712

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = +2

Query: 128 RTLITRSNPCISPLSFSAG 184
           + L+ R+ PC++P+ FSAG
Sbjct: 102 KDLLNRNEPCVAPVGFSAG 120


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,506,245
Number of Sequences: 27780
Number of extensions: 326985
Number of successful extensions: 689
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 648
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 689
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1465835342
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)