Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0302
         (656 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g78580.1 68414.m09158 alpha, alpha-trehalose-phosphate syntha...    31   0.51 
At3g28780.1 68416.m03592 glycine-rich protein similar to H41 gen...    29   2.7  
At2g27210.1 68415.m03270 kelch repeat-containing serine/threonin...    29   2.7  
At1g08420.1 68414.m00931 kelch repeat-containing protein / serin...    29   3.6  
At1g01300.1 68414.m00046 aspartyl protease family protein contai...    28   4.8  
At3g01460.1 68416.m00070 PHD finger family protein / methyl-CpG ...    28   6.3  
At1g50890.1 68414.m05722 expressed protein                             28   6.3  
At4g26990.1 68417.m03883 expressed protein                             27   8.3  

>At1g78580.1 68414.m09158 alpha, alpha-trehalose-phosphate synthase,
           UDP-forming, putative / trehalose-6-phosphate synthase,
           putative / UDP-glucose-glucosephosphate
           glucosyltransferase, putative similar to
           trehalose-6-phosphate synthase SL-TPS/P [Selaginella
           lepidophylla] GI:4100325; contains Pfam profiles
           PF00982: Glycosyltransferase family 20, PF02358:
           Trehalose-phosphatase
          Length = 942

 Score = 31.5 bits (68), Expect = 0.51
 Identities = 25/66 (37%), Positives = 32/66 (48%)
 Frame = -1

Query: 419 HQPFDCCVGHRCLTRRTEVIMSICLFDLVFL*LKDYWWPSSLSSFTRTGGRAKAQPGGVE 240
           H PF     HR L  R+E++ S+   DLV     DY     +S+ TR  G  +  P GVE
Sbjct: 261 HTPFPSSEIHRTLPSRSELLRSVLAADLVGFHTYDY-ARHFVSACTRILG-LEGTPEGVE 318

Query: 239 LQLRAT 222
            Q R T
Sbjct: 319 DQGRLT 324


>At3g28780.1 68416.m03592 glycine-rich protein similar to H41 gene
           for histone protein GB:X15142 GI:3204 [Physarum
           polycephalum]
          Length = 614

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 18/36 (50%), Positives = 21/36 (58%)
 Frame = -3

Query: 270 ASKGSARRGGITTQSNCFANESTTGSESRPAEKLSG 163
           AS GSA  GG +T S   A+  +TGSES  A   SG
Sbjct: 430 ASGGSAETGGESTSSGV-ASGGSTGSESASAGAASG 464


>At2g27210.1 68415.m03270 kelch repeat-containing serine/threonine
           phosphoesterase family protein similar to SP|P48482
           Serine/threonine protein phosphatase PP1 isozyme 2 (EC
           3.1.3.16) {Arabidopsis thaliana}; contains Pfam profile
           PF00149: Calcineurin-like phosphoesterase
          Length = 1006

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 26/74 (35%), Positives = 36/74 (48%)
 Frame = +3

Query: 285 ETGKAAGPPVILQS*KNQIEKTNRHNYFSTPRKAPVTYTAVKWLMVLCDRYMYLSFLKLL 464
           ETG A G  ++ Q   +Q E   R   + TP  A    TA + L+   DR M ++ +   
Sbjct: 603 ETGGALGG-MVRQLSIDQFENEGRRVSYGTPESA----TAARKLL---DRQMSINSVPKK 654

Query: 465 LVVGPLVSPRGWIP 506
            VV  L+ PRGW P
Sbjct: 655 -VVAHLLKPRGWKP 667


>At1g08420.1 68414.m00931 kelch repeat-containing protein /
           serine/threonine phosphoesterase family protein contains
           Pfam profiles: PF00149 calcineurin-like phosphoesterase,
           PF01344 kelch motif
          Length = 1018

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 25/74 (33%), Positives = 36/74 (48%)
 Frame = +3

Query: 285 ETGKAAGPPVILQS*KNQIEKTNRHNYFSTPRKAPVTYTAVKWLMVLCDRYMYLSFLKLL 464
           ETG A G  ++ Q   +Q E   R   + TP  A    TA + L+   DR M ++ +   
Sbjct: 614 ETGGALGG-MVRQLSIDQFENEGRRVSYGTPESA----TAARKLL---DRQMSINSVPKK 665

Query: 465 LVVGPLVSPRGWIP 506
            V+  L+ PRGW P
Sbjct: 666 -VIAHLLKPRGWKP 678


>At1g01300.1 68414.m00046 aspartyl protease family protein contains
           Pfam domain, PF00026: eukaryotic aspartyl protease
          Length = 485

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
 Frame = +2

Query: 125 FRTLITRSN--PCISPLSFSAGRDSDPVVDS 211
           F+TL   S+  PC SP+SF    DS+ +++S
Sbjct: 28  FQTLFPNSHSLPCASPVSFQPDSDSESLLES 58


>At3g01460.1 68416.m00070 PHD finger family protein / methyl-CpG
            binding domain-containing protein contains Pfam profiles
            PF00628: PHD-finger (2 copies), PF01429: Methyl-CpG
            binding domain
          Length = 2176

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -3

Query: 243  GITTQSNCFANESTTGSESRPAEKLSGLMHGF 148
            G+ ++SN   + S T S   P +K SGL  GF
Sbjct: 1964 GLNSESNMSFDRSVTDSHGGPLDKPSGLGFGF 1995


>At1g50890.1 68414.m05722 expressed protein
          Length = 821

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +3

Query: 369 STPRKAPVTYTAVKWLMVLCDRYMYLSFLKLLLVVGPLV 485
           S+  KAPV   +++ L  LC  Y  LSF +L  ++  +V
Sbjct: 86  SSDLKAPVKRESIRLLSFLCLSYTDLSFSQLAKIISHIV 124


>At4g26990.1 68417.m03883 expressed protein
          Length = 474

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +1

Query: 55  KLNPLANT*VTGGNRFVFPSPLGIPHLNN 141
           KLNP A        + + PSP+G+PH+ N
Sbjct: 253 KLNPEAKIFSPSYTKRLSPSPVGMPHVGN 281


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,836,694
Number of Sequences: 28952
Number of extensions: 313919
Number of successful extensions: 610
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 602
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 610
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1373722560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)