Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0301
         (671 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A4XGC8 Cluster: CRISPR-associated helicase Cas3; n=1; C...    35   2.1  
UniRef50_Q8II20 Cluster: Putative uncharacterized protein; n=1; ...    33   6.3  

>UniRef50_A4XGC8 Cluster: CRISPR-associated helicase Cas3; n=1;
           Caldicellulosiruptor saccharolyticus DSM 8903|Rep:
           CRISPR-associated helicase Cas3 - Caldicellulosiruptor
           saccharolyticus (strain ATCC 43494 / DSM 8903)
          Length = 908

 Score = 34.7 bits (76), Expect = 2.1
 Identities = 23/68 (33%), Positives = 32/68 (47%), Gaps = 7/68 (10%)
 Frame = +1

Query: 457 RLLLVTILNPNFITSQVNDVLPSSCYDVAHND*SFYNIYK-------KIYKRSININLIS 615
           + LL+T   P F+   + DV+P  C  V     +F NIY+       K+YK  I +NLI 
Sbjct: 418 KFLLMTATMPKFVIDYLKDVIPDFCKKV-----NFVNIYEKEKDAFSKLYKHKIRLNLIE 472

Query: 616 CFLNSHDI 639
                 DI
Sbjct: 473 TKDKQFDI 480


>UniRef50_Q8II20 Cluster: Putative uncharacterized protein; n=1;
           Plasmodium falciparum 3D7|Rep: Putative uncharacterized
           protein - Plasmodium falciparum (isolate 3D7)
          Length = 109

 Score = 33.1 bits (72), Expect = 6.3
 Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
 Frame = -3

Query: 663 MDFRIVNKNIVRIQEATNKININGS---FIYFFVYIVKRLVIVCYV 535
           +DF+I+ +NI +I+E   K++ N     F +FF YI  +  I  YV
Sbjct: 57  LDFKILQENIHKIKEGFRKLDENTEKVFFFFFFFYITYKKYIDTYV 102


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 627,750,580
Number of Sequences: 1657284
Number of extensions: 12552940
Number of successful extensions: 26649
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 25710
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26640
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 51652897375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)