Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0301
         (671 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    24   1.3  
DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    22   4.0  
AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosin...    21   6.9  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 7/23 (30%), Positives = 15/23 (65%)
 Frame = -2

Query: 286  LMYWVFYQHWTGEEGHMWCVYFF 218
            +M + F+ HW  + GH+  +Y++
Sbjct: 2510 VMTYDFHGHWDKQTGHVAPLYYY 2532


>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 10/37 (27%), Positives = 19/37 (51%)
 Frame = +1

Query: 484 PNFITSQVNDVLPSSCYDVAHND*SFYNIYKKIYKRS 594
           P  I + + +++P S +    N   FY + +KI  +S
Sbjct: 45  PVQILALLQEIIPKSYFGTTTNLKRFYKVVEKILTQS 81


>AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosine
           kinase Torso-likeprotein protein.
          Length = 803

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 6/15 (40%), Positives = 9/15 (60%)
 Frame = -1

Query: 140 YCKNGDLELMSQSGW 96
           YC  GDL+   ++ W
Sbjct: 534 YCSRGDLQTYLRTAW 548


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 158,255
Number of Sequences: 336
Number of extensions: 3522
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17489640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)