Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0301
         (671 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC31E1.02c |pmr1||P-type ATPase, calcium transporting Pmr1 |Sc...    28   1.4  
SPBC28E12.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    27   1.9  
SPBC6B1.04 |mde4||monopolin-like complex subunit Mde4|Schizosacc...    27   3.3  
SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11 |Schizosacc...    25   7.5  
SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyc...    25   9.9  
SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D |Schi...    25   9.9  

>SPBC31E1.02c |pmr1||P-type ATPase, calcium transporting Pmr1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 899

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = +2

Query: 554 NLFTIYTKKYIKDPLILILLVAS 622
           N+   + K+++KDPLIL+L  +S
Sbjct: 50  NMVVQFLKQFVKDPLILLLFASS 72


>SPBC28E12.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 356

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 17/45 (37%), Positives = 21/45 (46%)
 Frame = +2

Query: 128 RFYSTRATPIFKPKPNQTIPDGFSFLINYLKKIYTPHVPFFPCPV 262
           R Y  R   +FK  P   I D FS+ +N L K+  P  P   C V
Sbjct: 130 RIYLGRFQTLFKSFPFNLISDSFSYRLN-LSKL--PRTPLEKCTV 171


>SPBC6B1.04 |mde4||monopolin-like complex subunit
           Mde4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 421

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 9/30 (30%), Positives = 18/30 (60%)
 Frame = +1

Query: 463 LLVTILNPNFITSQVNDVLPSSCYDVAHND 552
           + V+  N  ++   ++D +PS+  D+ HND
Sbjct: 313 MTVSPSNARYLKKHLDDTIPSNVSDINHND 342


>SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1284

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 14/42 (33%), Positives = 25/42 (59%)
 Frame = -1

Query: 377 IYKLRTYLITFKNTNI**LGTIDFVFQFTNINVLGILSALDR 252
           +Y ++   + F+ +NI  L  +  V+Q TNI++L  L  LD+
Sbjct: 121 VYMIQFITLCFQFSNIEKLRKL--VYQLTNISILNSLDNLDK 160


>SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 987

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 14/44 (31%), Positives = 25/44 (56%)
 Frame = -1

Query: 485 GFNIVTNKSRSACTVNNIDM**HYSSNAHIKSTYLYIYKLRTYL 354
           G N VT K+   CTV N+ +  ++  +   ++T   I ++RT+L
Sbjct: 660 GDNFVTKKN--VCTVMNLWVQKYFFEDLKARNTLYLISEMRTFL 701


>SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1107

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 16/46 (34%), Positives = 23/46 (50%)
 Frame = +1

Query: 523 SSCYDVAHND*SFYNIYKKIYKRSININLISCFLNSHDIFINDAKI 660
           +SCY V     SFY+ Y K     +  NLI C L +  +F N+  +
Sbjct: 432 ASCYFVW----SFYHCYSKSAIEGLQTNLILCLLQT-VLFDNEINV 472


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,720,697
Number of Sequences: 5004
Number of extensions: 56819
Number of successful extensions: 134
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)