Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0301
         (671 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0404 + 3053558-3053939,3054028-3054123,3054217-3054309,305...    28   5.9  

>01_01_0404 +
           3053558-3053939,3054028-3054123,3054217-3054309,
           3054432-3054517,3054633-3054896,3055076-3055203,
           3055306-3055401,3055580-3055685,3055778-3055942
          Length = 471

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = +2

Query: 134 YSTRATPIFKPKPNQTIPDGFSFLINYLKK 223
           YS   + +F    N+T  D ++FL+N+L++
Sbjct: 144 YSNTTSDLFTAGDNKTAHDSYAFLVNWLER 173


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,870,003
Number of Sequences: 37544
Number of extensions: 309440
Number of successful extensions: 517
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 508
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 517
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1703141568
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)