Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0301
         (671 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U97192-2|AAO38678.1|  622|Caenorhabditis elegans Hypothetical pr...    31   0.75 
U97192-1|AAB52434.2|  986|Caenorhabditis elegans Hypothetical pr...    31   0.75 
Z92830-15|CAN86918.1|  366|Caenorhabditis elegans Hypothetical p...    29   4.0  
AF106582-4|AAC78219.1|  456|Caenorhabditis elegans Hypothetical ...    29   4.0  
AF016447-10|AAG24008.1|  314|Caenorhabditis elegans Hypothetical...    29   4.0  
Z77664-2|CAB01217.1|  643|Caenorhabditis elegans Hypothetical pr...    27   9.2  
Z73970-5|CAA98248.1|  643|Caenorhabditis elegans Hypothetical pr...    27   9.2  

>U97192-2|AAO38678.1|  622|Caenorhabditis elegans Hypothetical
           protein C01F4.2b protein.
          Length = 622

 Score = 31.1 bits (67), Expect = 0.75
 Identities = 22/71 (30%), Positives = 35/71 (49%)
 Frame = +1

Query: 112 MSSKSPFLQYKGYPDLQTETEPDDTRWIFISNQLS*KNIHTTCALLPLSSADKIPSTLMF 291
           M +KS     K  P++ + T P+D +W++ S Q    N++ T    P S     PS +M 
Sbjct: 418 MLNKSKAKPTKSEPEMMSHTMPEDRKWLYPSTQ----NLYPTSTSNPSS-----PSPIMG 468

Query: 292 VN*KTKSIVPN 324
               T SI+P+
Sbjct: 469 SAPPTGSILPS 479


>U97192-1|AAB52434.2|  986|Caenorhabditis elegans Hypothetical
           protein C01F4.2a protein.
          Length = 986

 Score = 31.1 bits (67), Expect = 0.75
 Identities = 22/71 (30%), Positives = 35/71 (49%)
 Frame = +1

Query: 112 MSSKSPFLQYKGYPDLQTETEPDDTRWIFISNQLS*KNIHTTCALLPLSSADKIPSTLMF 291
           M +KS     K  P++ + T P+D +W++ S Q    N++ T    P S     PS +M 
Sbjct: 418 MLNKSKAKPTKSEPEMMSHTMPEDRKWLYPSTQ----NLYPTSTSNPSS-----PSPIMG 468

Query: 292 VN*KTKSIVPN 324
               T SI+P+
Sbjct: 469 SAPPTGSILPS 479


>Z92830-15|CAN86918.1|  366|Caenorhabditis elegans Hypothetical
           protein F11A5.5b protein.
          Length = 366

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 14/29 (48%), Positives = 20/29 (68%)
 Frame = +2

Query: 560 FTIYTKKYIKDPLILILLVAS*IRTIFLL 646
           F  Y+KK +K PL  ++LV S I T+FL+
Sbjct: 21  FATYSKKAVKSPLFWMILVYS-IFTVFLI 48


>AF106582-4|AAC78219.1|  456|Caenorhabditis elegans Hypothetical
           protein W05F2.6 protein.
          Length = 456

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = +2

Query: 155 IFKPKPNQTIPDGFSFLINYLKKIYTPHVPFFPCPV 262
           +  PK + T P+G+SF +  LK   TP +P  P P+
Sbjct: 163 VVNPK-SSTTPEGYSFELRNLK---TPEIPAMPTPL 194


>AF016447-10|AAG24008.1|  314|Caenorhabditis elegans Hypothetical
           protein C54F6.3 protein.
          Length = 314

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
 Frame = -1

Query: 398 IKSTYLY--IYKLRTYLITFKNTNI**LGTIDFVFQFTNI 285
           I STYLY  I+K   Y++ F   ++   G  DF+  F NI
Sbjct: 16  ILSTYLYSYIFKESKYIVIFDGKHVNFTGIEDFIPPFVNI 55


>Z77664-2|CAB01217.1|  643|Caenorhabditis elegans Hypothetical
           protein C29A12.6 protein.
          Length = 643

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +2

Query: 104 FET*VLSLRFYSTRATPIFKPKP 172
           F T +  ++F++T  TPI KPKP
Sbjct: 433 FTTVMNPMKFFTTTRTPITKPKP 455


>Z73970-5|CAA98248.1|  643|Caenorhabditis elegans Hypothetical
           protein C29A12.6 protein.
          Length = 643

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +2

Query: 104 FET*VLSLRFYSTRATPIFKPKP 172
           F T +  ++F++T  TPI KPKP
Sbjct: 433 FTTVMNPMKFFTTTRTPITKPKP 455


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,748,229
Number of Sequences: 27780
Number of extensions: 309211
Number of successful extensions: 594
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 582
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 594
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1518563232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)