Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0301
         (671 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex det...    25   0.87 
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    23   2.0  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   2.0  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    23   3.5  
AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex det...    22   4.6  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    22   6.1  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    21   8.1  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    21   8.1  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    21   8.1  

>AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 24.6 bits (51), Expect = 0.87
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +1

Query: 499 SQVNDVLPSSCYDVAHND*SFYNIYKKIYKRSININLI 612
           S+ + ++ S      HN+ ++ N  KK+Y   INI  I
Sbjct: 309 SKESKIISSLSNKTIHNNNNYKNYNKKLYYNIINIEQI 346


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = +1

Query: 562 YNIYKKIYKRSININLI 612
           YN YKK+Y   INI  I
Sbjct: 346 YNNYKKLYYNIINIEQI 362


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 10/39 (25%), Positives = 21/39 (53%)
 Frame = +3

Query: 138 VQGLPRSSNRNRTRRYPMDFHF*SIILKKYTHHMCPSSP 254
           + G+PRS+ RN+  +  M+    + +   ++H   P +P
Sbjct: 616 IYGIPRSTLRNKVYKLAMERERDASLSSTHSHPHEPGAP 654


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
 Frame = +1

Query: 511 DVLPSSCY--DVAHND*SFYNIYKKI 582
           D  PSS    +VA +D  FY +YKK+
Sbjct: 416 DYTPSSLELGEVAVHDPVFYQLYKKV 441


>AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = +2

Query: 209 NYLKKIYTPHVPFFPCPVLIKYPVH 283
           NY KK+Y   +     PV +  P+H
Sbjct: 327 NYNKKLYYNIINIEQIPVPVPVPIH 351


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 8/24 (33%), Positives = 12/24 (50%)
 Frame = -1

Query: 134 KNGDLELMSQSGWRHLHCRCLWAP 63
           K+ + ++   SGWR L     W P
Sbjct: 207 KSNEKKIPKSSGWRKLRNIVHWTP 230


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 6/9 (66%), Positives = 7/9 (77%)
 Frame = -2

Query: 286 LMYWVFYQH 260
           LMYW+ Y H
Sbjct: 421 LMYWIIYLH 429


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 6/9 (66%), Positives = 7/9 (77%)
 Frame = -2

Query: 286 LMYWVFYQH 260
           LMYW+ Y H
Sbjct: 421 LMYWIIYLH 429


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +3

Query: 213 ILKKYTHHMCPSSPV 257
           +LK  T+  CPS PV
Sbjct: 609 VLKTDTNQSCPSPPV 623


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 183,561
Number of Sequences: 438
Number of extensions: 4351
Number of successful extensions: 11
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20343105
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)