Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0300
         (641 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q6UV17 Cluster: Endonuclease and reverse transcriptase-...    35   1.9  
UniRef50_Q7R2V4 Cluster: GLP_291_31994_37297; n=1; Giardia lambl...    34   2.5  
UniRef50_O43079 Cluster: AP-1 complex subunit beta-1 (Beta(1)-ad...    33   7.7  

>UniRef50_Q6UV17 Cluster: Endonuclease and reverse transcriptase-like
            protein; n=25; Arthropoda|Rep: Endonuclease and reverse
            transcriptase-like protein - Bombyx mori (Silk moth)
          Length = 986

 Score = 34.7 bits (76), Expect = 1.9
 Identities = 15/20 (75%), Positives = 16/20 (80%)
 Frame = +2

Query: 581  IRDGTQGLGSAPGIAEVHGR 640
            +  G Q LGSAPGIAEVHGR
Sbjct: 966  VLSGRQRLGSAPGIAEVHGR 985


>UniRef50_Q7R2V4 Cluster: GLP_291_31994_37297; n=1; Giardia lamblia
            ATCC 50803|Rep: GLP_291_31994_37297 - Giardia lamblia
            ATCC 50803
          Length = 1767

 Score = 34.3 bits (75), Expect = 2.5
 Identities = 13/39 (33%), Positives = 25/39 (64%)
 Frame = +2

Query: 152  ISIKGFLLMFGHSNNCAII*YGLYIKKYNFTVLILNISS 268
            +SIK  LL +GH+  C ++ +G+ +   NF+  + N+S+
Sbjct: 1068 VSIKSLLLKYGHTIACKLVLHGVRLSIKNFSYSVTNVST 1106


>UniRef50_O43079 Cluster: AP-1 complex subunit beta-1
           (Beta(1)-adaptin); n=1; Schizosaccharomyces pombe|Rep:
           AP-1 complex subunit beta-1 (Beta(1)-adaptin) -
           Schizosaccharomyces pombe (Fission yeast)
          Length = 683

 Score = 32.7 bits (71), Expect = 7.7
 Identities = 20/82 (24%), Positives = 35/82 (42%), Gaps = 4/82 (4%)
 Frame = +1

Query: 52  VECYLKTVALKTVANRVSLTLPMSISNMSIRPFNINK----GLLTYVWAFK*LCYNMIWT 219
           ++   +T+A  TV   VS   P  + N++ R   + K     L+ Y      LC   + T
Sbjct: 35  IDAVKRTIAAMTVGKDVSSLFPDVLKNLATRDITLKKLVYLYLINYAKTHPDLCILAVNT 94

Query: 220 IYKKVQFYSPNIKYIIHVDFGC 285
             K  + Y+P ++ +     GC
Sbjct: 95  FVKDSEEYNPTLRALAIRTMGC 116


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 586,467,212
Number of Sequences: 1657284
Number of extensions: 10721844
Number of successful extensions: 25842
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 25255
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25840
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 48126133708
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)