Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0300
         (641 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC947.02 |apl2||AP-1 adaptor complex subunit Apl2 |Schizosacch...    33   0.046
SPAC1786.03 |cut11|SPAC24C9.01|integral membrane nucleoporin|Sch...    27   2.3  
SPAC23H3.05c |swd1||COMPASS complex subunit Swd1|Schizosaccharom...    26   5.3  
SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster ...    25   7.0  
SPAC17C9.07 |alg8||glucosyltransferase Alg8|Schizosaccharomyces ...    25   9.3  

>SPBC947.02 |apl2||AP-1 adaptor complex subunit Apl2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 683

 Score = 32.7 bits (71), Expect = 0.046
 Identities = 20/82 (24%), Positives = 35/82 (42%), Gaps = 4/82 (4%)
 Frame = +1

Query: 52  VECYLKTVALKTVANRVSLTLPMSISNMSIRPFNINK----GLLTYVWAFK*LCYNMIWT 219
           ++   +T+A  TV   VS   P  + N++ R   + K     L+ Y      LC   + T
Sbjct: 35  IDAVKRTIAAMTVGKDVSSLFPDVLKNLATRDITLKKLVYLYLINYAKTHPDLCILAVNT 94

Query: 220 IYKKVQFYSPNIKYIIHVDFGC 285
             K  + Y+P ++ +     GC
Sbjct: 95  FVKDSEEYNPTLRALAIRTMGC 116


>SPAC1786.03 |cut11|SPAC24C9.01|integral membrane
           nucleoporin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = +1

Query: 241 YSPNIKYIIHVDFGC*ISCLCYYLIFG 321
           +SP   +++++ F   +SCLC + I G
Sbjct: 103 FSPKSFFLVYLTFAVSVSCLCLFYIKG 129


>SPAC23H3.05c |swd1||COMPASS complex subunit
           Swd1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 398

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 12/45 (26%), Positives = 21/45 (46%)
 Frame = -2

Query: 139 WTCCLWTLAMSATLDSPLFSKPLFSNSIQQIALNKALYQVLVPIP 5
           W C LW L   + +   + S P++S S+    +N  +  +L   P
Sbjct: 88  WKCILWDLRDGSIVYQVVLSAPVWSASLHPHKINTFVASLLDESP 132


>SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 827

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -3

Query: 246 TVKLYFFIYSPYHIIAQLFECPNISK 169
           T KL+F +YS Y+ +  L  C  ++K
Sbjct: 539 TPKLFFNLYSGYYALMTLTYCATLTK 564


>SPAC17C9.07 |alg8||glucosyltransferase Alg8|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 501

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 9/11 (81%), Positives = 11/11 (100%)
 Frame = +3

Query: 171 YLCLGIQITVL 203
           Y+CLG+QITVL
Sbjct: 321 YICLGLQITVL 331


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,454,429
Number of Sequences: 5004
Number of extensions: 47380
Number of successful extensions: 110
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)