Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0300
         (641 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0035 + 358669-359007,359458-359617,359723-360582                 29   2.4  
03_02_0009 + 4891545-4892147,4892757-4893308                           29   4.1  
02_03_0152 - 15767985-15768317                                         29   4.1  
12_02_0364 - 18020249-18020737,18021075-18021502,18021563-180216...    27   9.6  
05_07_0037 - 27229351-27230037,27230305-27230330,27230536-27231961     27   9.6  

>06_01_0035 + 358669-359007,359458-359617,359723-360582
          Length = 452

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -3

Query: 174 SKKPFIDIKGPYGHVAYGHWQCQRHSIRHCFQSHC 70
           SKK  + I+ P G      W C +  +R  F++HC
Sbjct: 376 SKKKLLHIRRPAGQPLVDDWDCLKSMVR-TFEAHC 409


>03_02_0009 + 4891545-4892147,4892757-4893308
          Length = 384

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = +1

Query: 214 WTIYKKVQFYSPNIKYIIHVDFGC*ISCLCYYLIFGIVDRPD 339
           W +  K+   S  I Y  H + G  I CL    +F ++ RPD
Sbjct: 254 WALGLKLGSESKGITYSAHRNIGIAIFCLATLQVFALLLRPD 295


>02_03_0152 - 15767985-15768317
          Length = 110

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = -3

Query: 606 PSPCVPSLIIGKAVYKRNDLARFRPFPLSTVEW 508
           PSP +P L  G A + R    R  P+P S   W
Sbjct: 23  PSPMLPELSHGVAEFSRQSTRRHAPWPPSGGHW 55


>12_02_0364 -
           18020249-18020737,18021075-18021502,18021563-18021649,
           18022059-18022192,18023051-18023053,18023129-18023187,
           18023429-18023887
          Length = 552

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -3

Query: 534 PFPLSTVEWFARRFIFALALSKLYNI 457
           P P+ST+EW+      A+ LS+L N+
Sbjct: 293 PSPISTIEWYLVFTSLAIVLSQLPNL 318


>05_07_0037 - 27229351-27230037,27230305-27230330,27230536-27231961
          Length = 712

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 18/55 (32%), Positives = 28/55 (50%)
 Frame = +1

Query: 436 TAREN*IDIIQFRKSESENKASREPLDRGERERTKAS*VVSFIHSLPYYKRRHAG 600
           TAR + +D++QF+ S   N+ S+   + G+R   +        H LP  KR  AG
Sbjct: 526 TARMD-LDLMQFQLSRMRNQESQARTEPGDRWLKRLQIDSKDPHHLPCSKRSKAG 579


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,546,654
Number of Sequences: 37544
Number of extensions: 286518
Number of successful extensions: 687
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 678
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 687
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1584867848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)