Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0300
         (641 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10342| Best HMM Match : PkinA_anch (HMM E-Value=0.2)                29   4.2  
SB_57232| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.2  
SB_44240| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.2  
SB_29325| Best HMM Match : PkinA_anch (HMM E-Value=0.99)               29   4.2  
SB_57561| Best HMM Match : fn3 (HMM E-Value=0)                         28   7.4  
SB_41562| Best HMM Match : DUF131 (HMM E-Value=2.7)                    28   7.4  
SB_32767| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.8  

>SB_10342| Best HMM Match : PkinA_anch (HMM E-Value=0.2)
          Length = 302

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = -3

Query: 159 IDIKGPYGHVAYGHWQCQRHSIRHCFQSHCFQIAFNKLPLIKLSI 25
           +++K    H+    W+C R  IR   +++ F   F K PL KL +
Sbjct: 40  MELKERATHIDGYQWKCPRCLIRRSLRTNSFFELFPKTPLSKLVV 84


>SB_57232| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 349

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = -3

Query: 159 IDIKGPYGHVAYGHWQCQRHSIRHCFQSHCFQIAFNKLPLIKLSI 25
           +++K    H+    W+C R  IR   +++ F   F K PL KL +
Sbjct: 1   MELKERATHIDGYQWKCPRCLIRRSLRTNSFFELFPKTPLSKLVV 45


>SB_44240| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 112

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = -3

Query: 159 IDIKGPYGHVAYGHWQCQRHSIRHCFQSHCFQIAFNKLPLIKLSI 25
           +++K    H+    W+C R  IR   +++ F   F K PL KL +
Sbjct: 1   MELKERATHIDGYQWKCPRCLIRRSLRTNSFFELFPKTPLSKLVV 45


>SB_29325| Best HMM Match : PkinA_anch (HMM E-Value=0.99)
          Length = 302

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = -3

Query: 159 IDIKGPYGHVAYGHWQCQRHSIRHCFQSHCFQIAFNKLPLIKLSI 25
           +++K    H+    W+C R  IR   +++ F   F K PL KL +
Sbjct: 40  MELKERATHIDGYQWKCPRCLIRRSLRTNSFFELFPKTPLSKLVV 84


>SB_57561| Best HMM Match : fn3 (HMM E-Value=0)
          Length = 1614

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 22/71 (30%), Positives = 30/71 (42%), Gaps = 2/71 (2%)
 Frame = -3

Query: 252  IRTVKLYFFIYSPYHIIAQ--LFECPNISKKPFIDIKGPYGHVAYGHWQCQRHSIRHCFQ 79
            +R  K Y  +   Y I  Q  LFE PN+      D K  YG V            RH  Q
Sbjct: 1536 LRNKKSYGALLDAYAIGHQRHLFEDPNLRMVRLYDFKSAYGVVMANSSTRMTKCFRHYIQ 1595

Query: 78   SHCFQIAFNKL 46
            ++  +I FN++
Sbjct: 1596 NNTQKI-FNRI 1605


>SB_41562| Best HMM Match : DUF131 (HMM E-Value=2.7)
          Length = 332

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 12/40 (30%), Positives = 24/40 (60%)
 Frame = +2

Query: 191 NNCAII*YGLYIKKYNFTVLILNISSMLISVVELVVCVII 310
           NNC I+   +YI   +  ++I+ I S++I    +++ +II
Sbjct: 280 NNCIIVIISIYIIIISSIIIIIIIISIIIISSSIIIIIII 319


>SB_32767| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1259

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = +2

Query: 503  ANHSTVERGKGRKRARSFLLYTAFPIIRDGTQGLGSAPGIAEVH 634
            A HS +E+GK R++A+  L+     I R+ ++ L      AE H
Sbjct: 1091 ALHSAIEQGKQRRKAKKRLVERKIAIAREYSRTLDDELERAERH 1134


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,062,578
Number of Sequences: 59808
Number of extensions: 337846
Number of successful extensions: 703
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 672
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 702
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1620947750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)