Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0300
         (641 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ439398-8|CAD28131.1| 1283|Anopheles gambiae putative different...    26   1.2  
AY705398-1|AAU12507.1|  555|Anopheles gambiae nicotinic acetylch...    23   6.2  
AY705397-1|AAU12506.1|  555|Anopheles gambiae nicotinic acetylch...    23   6.2  

>AJ439398-8|CAD28131.1| 1283|Anopheles gambiae putative
           differentiation regulator protein.
          Length = 1283

 Score = 25.8 bits (54), Expect = 1.2
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +1

Query: 472 RKSESENKASREPLDRGERERTKAS*VVSFIHSLP 576
           R+ E E +A+RE     ERER +   +    HSLP
Sbjct: 513 REKEREREAARERERERERERERERMMHMMPHSLP 547


>AY705398-1|AAU12507.1|  555|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 4 protein.
          Length = 555

 Score = 23.4 bits (48), Expect = 6.2
 Identities = 9/32 (28%), Positives = 20/32 (62%)
 Frame = -2

Query: 115 AMSATLDSPLFSKPLFSNSIQQIALNKALYQV 20
           A+ + + SP F +P FS+S+    ++++ + V
Sbjct: 446 AVPSGIKSPAFKQPAFSHSVCSTEVHRSCFCV 477


>AY705397-1|AAU12506.1|  555|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 4 protein.
          Length = 555

 Score = 23.4 bits (48), Expect = 6.2
 Identities = 9/32 (28%), Positives = 20/32 (62%)
 Frame = -2

Query: 115 AMSATLDSPLFSKPLFSNSIQQIALNKALYQV 20
           A+ + + SP F +P FS+S+    ++++ + V
Sbjct: 446 AVPSGIKSPAFKQPAFSHSVCSTEVHRSCFCV 477


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 612,194
Number of Sequences: 2352
Number of extensions: 11218
Number of successful extensions: 18
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 63141405
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)