Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0300
         (641 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Y14277-1|CAA74654.1| 1116|Drosophila melanogaster nuclear protei...    30   2.3  
AY061578-1|AAL29126.1|  889|Drosophila melanogaster SD02883p pro...    28   9.4  
AE014296-2904|AAF49347.2|  889|Drosophila melanogaster CG3885-PA...    28   9.4  

>Y14277-1|CAA74654.1| 1116|Drosophila melanogaster nuclear protein
           SA protein.
          Length = 1116

 Score = 30.3 bits (65), Expect = 2.3
 Identities = 12/41 (29%), Positives = 23/41 (56%)
 Frame = +1

Query: 475 KSESENKASREPLDRGERERTKAS*VVSFIHSLPYYKRRHA 597
           + E   +  +EP+D+G  ER ++   ++   + PYY  RH+
Sbjct: 73  RKERVERPRKEPVDKGHHERIQSEREITTDENSPYYIVRHS 113


>AY061578-1|AAL29126.1|  889|Drosophila melanogaster SD02883p
           protein.
          Length = 889

 Score = 28.3 bits (60), Expect = 9.4
 Identities = 25/95 (26%), Positives = 40/95 (42%), Gaps = 10/95 (10%)
 Frame = -3

Query: 612 AEPSPCVPSLIIGKAVYKRNDLARFRPFPLSTVEWFARR------FIFALALSKLYNIYL 451
           A P P V   +I ++  +  +  R R + L  ++W   R        F L L KLY  Y 
Sbjct: 49  APPVPVVTLCLIKQSEQREGEYKRKRSWQLDEIKWVDGRNEQFQTHEFDLQLEKLYKWYA 108

Query: 450 VLSSRNES----VAR*ILLSTRLKKFHFKN*ATAW 358
           +     ++    + R I  S R ++  F+N   AW
Sbjct: 109 LNPHERQNFLAVLNRQIQKSVRGQRAEFRNVPAAW 143


>AE014296-2904|AAF49347.2|  889|Drosophila melanogaster CG3885-PA
           protein.
          Length = 889

 Score = 28.3 bits (60), Expect = 9.4
 Identities = 25/95 (26%), Positives = 40/95 (42%), Gaps = 10/95 (10%)
 Frame = -3

Query: 612 AEPSPCVPSLIIGKAVYKRNDLARFRPFPLSTVEWFARR------FIFALALSKLYNIYL 451
           A P P V   +I ++  +  +  R R + L  ++W   R        F L L KLY  Y 
Sbjct: 49  APPVPVVTLCLIKQSEQREGEYKRKRSWQLDEIKWVDGRNEQFETHEFDLQLEKLYKWYA 108

Query: 450 VLSSRNES----VAR*ILLSTRLKKFHFKN*ATAW 358
           +     ++    + R I  S R ++  F+N   AW
Sbjct: 109 LNPHERQNFLAVLNRQIQKSVRGQRAEFRNVPAAW 143


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,747,289
Number of Sequences: 53049
Number of extensions: 480635
Number of successful extensions: 923
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 900
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 923
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2703623850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)