Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0300
         (641 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U64856-6|AAB04989.1|  406|Caenorhabditis elegans Hypothetical pr...    29   2.1  
U64856-5|AAT81185.1|  301|Caenorhabditis elegans Hypothetical pr...    29   2.1  
Z82084-4|CAB04980.1|  667|Caenorhabditis elegans Hypothetical pr...    29   2.8  
AC006729-5|AAK84599.2|  568|Caenorhabditis elegans Hypothetical ...    27   8.6  

>U64856-6|AAB04989.1|  406|Caenorhabditis elegans Hypothetical
           protein T25F10.6a protein.
          Length = 406

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = -2

Query: 424 REVNFTLNAPKEVSLQKLGYGLGRPPTLH 338
           ++VNFT + P+ V  ++  Y  G+P T+H
Sbjct: 63  QQVNFTPSIPQSVLRKQQNYSSGKPSTIH 91


>U64856-5|AAT81185.1|  301|Caenorhabditis elegans Hypothetical
           protein T25F10.6b protein.
          Length = 301

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = -2

Query: 424 REVNFTLNAPKEVSLQKLGYGLGRPPTLH 338
           ++VNFT + P+ V  ++  Y  G+P T+H
Sbjct: 63  QQVNFTPSIPQSVLRKQQNYSSGKPSTIH 91


>Z82084-4|CAB04980.1|  667|Caenorhabditis elegans Hypothetical
           protein ZK1053.4 protein.
          Length = 667

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 16/45 (35%), Positives = 24/45 (53%)
 Frame = +1

Query: 472 RKSESENKASREPLDRGERERTKAS*VVSFIHSLPYYKRRHAGTW 606
           +K+E   +   EP    E E T  +  VS+I SLP YK+ +  T+
Sbjct: 416 QKAEEPVEEDVEPESDAEPEETLDAEHVSYITSLPTYKKEYCQTY 460


>AC006729-5|AAK84599.2|  568|Caenorhabditis elegans Hypothetical
           protein Y24D9A.2 protein.
          Length = 568

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 11/35 (31%), Positives = 16/35 (45%)
 Frame = +1

Query: 199 CYNMIWTIYKKVQFYSPNIKYIIHVDFGC*ISCLC 303
           C    +T +K + F++P   Y  H  F C   C C
Sbjct: 310 CGKTEFTSFKPIYFFNPKDHYYDHAGFACSELCGC 344


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,322,463
Number of Sequences: 27780
Number of extensions: 255350
Number of successful extensions: 682
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 664
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 682
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1427403330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)