Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0299
         (601 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.       29   0.040
AF263515-1|AAF74207.1|  126|Tribolium castaneum cytochrome P450 ...    25   0.49 
AF265213-1|AAF75277.1|  143|Tribolium castaneum putative cytochr...    24   0.85 
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    22   4.6  
AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain tran...    22   4.6  
AF230313-1|AAF64147.1|  210|Tribolium castaneum labial protein p...    22   4.6  
AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein p...    22   4.6  

>U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.
          Length = 470

 Score = 28.7 bits (61), Expect = 0.040
 Identities = 14/50 (28%), Positives = 24/50 (48%)
 Frame = +3

Query: 447 NNIQYPTPSEIKKILRDHHDSTTAGHPGVARMLGRIKELYWWKNMRQDIE 596
           N++    P  +   L D+H     GH G  ++   +K  Y+W NM + I+
Sbjct: 118 NDVCLAIPESLVIKLVDYHHQLL-GHFGATKVYNSMKREYYWPNMYRTIK 166


>AF263515-1|AAF74207.1|  126|Tribolium castaneum cytochrome P450
           monooxygenase protein.
          Length = 126

 Score = 25.0 bits (52), Expect = 0.49
 Identities = 22/76 (28%), Positives = 31/76 (40%), Gaps = 1/76 (1%)
 Frame = +3

Query: 30  IQEFNDSLLKAKCKLIAYPTSIDLDESVPYCSEII-EMSTTMPDIREVERELYSFYSTGN 206
           +QE  D L   K K    P   DL E + Y   +I E+    P +  + REL     T  
Sbjct: 23  VQEMKDVLGDTKKK----PVYNDLQE-LKYMERVIKEVLRLYPSVHYISRELGEDMVTTT 77

Query: 207 ASHLFTHLFVRVHFYD 254
              L     +++H YD
Sbjct: 78  GYKLRKGTILQLHIYD 93


>AF265213-1|AAF75277.1|  143|Tribolium castaneum putative cytochrome
           P450 monooxigenaseCYP4Q3 protein.
          Length = 143

 Score = 24.2 bits (50), Expect = 0.85
 Identities = 18/66 (27%), Positives = 28/66 (42%), Gaps = 1/66 (1%)
 Frame = +3

Query: 84  PTSIDLDESVPYCSEIIEMSTTM-PDIREVERELYSFYSTGNASHLFTHLFVRVHFYDEF 260
           PT  +L E + Y    I+ S  + P +  + R+L   + T N   L       +H YD  
Sbjct: 54  PTYNNLQE-MKYLERAIKESLRLYPSVHFISRKLGEDFVTCNGLKLPKSTITHLHIYDLH 112

Query: 261 TYKDIF 278
              DI+
Sbjct: 113 HNPDIY 118


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10
           protein.
          Length = 2700

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 13/45 (28%), Positives = 20/45 (44%)
 Frame = +3

Query: 342 ISDFSDPYTKLSFTKIYNIVAFLFHDTQIKVNIYHNNIQYPTPSE 476
           + D  +P    S     N+ AF FH  +  V  +H N+ Y  P +
Sbjct: 344 VEDGFNPQRLGSLVDFINLQAFDFHREREPVADHHANL-YSRPGD 387


>AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain
           transcription factor Labialprotein.
          Length = 353

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 9/29 (31%), Positives = 12/29 (41%)
 Frame = +3

Query: 438 IYHNNIQYPTPSEIKKILRDHHDSTTAGH 524
           I H N   P     + +L  HH+    GH
Sbjct: 98  INHQNYNEPYQRTHENMLLRHHEEVADGH 126


>AF230313-1|AAF64147.1|  210|Tribolium castaneum labial protein
           protein.
          Length = 210

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 9/29 (31%), Positives = 12/29 (41%)
 Frame = +3

Query: 438 IYHNNIQYPTPSEIKKILRDHHDSTTAGH 524
           I H N   P     + +L  HH+    GH
Sbjct: 98  INHQNYNEPYQRTHENMLLRHHEEVADGH 126


>AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein
           protein.
          Length = 253

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 9/29 (31%), Positives = 12/29 (41%)
 Frame = +3

Query: 438 IYHNNIQYPTPSEIKKILRDHHDSTTAGH 524
           I H N   P     + +L  HH+    GH
Sbjct: 98  INHQNYNEPYQRTHENMLLRHHEEVADGH 126


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 147,332
Number of Sequences: 336
Number of extensions: 3331
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15143945
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)