Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0299
(601 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces p... 29 0.39
SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable element|Schizosa... 29 0.39
SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyc... 29 0.39
SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyce... 29 0.39
SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable element|Schiz... 29 0.39
SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomy... 29 0.39
SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyc... 29 0.39
SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyc... 29 0.39
SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable element|Schizo... 29 0.39
SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomy... 29 0.39
SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable element|Schizos... 29 0.39
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc... 28 1.2
SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo... 28 1.2
SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|ch... 27 2.1
SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces ... 27 2.8
SPAC6F6.12 |||autophagy associated protein Atg24|Schizosaccharom... 26 3.7
SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase Ogm4|Schizo... 26 3.7
SPAC227.07c |pab1||protein phosphatase regulatory subunit Pab1|S... 25 6.4
SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual 25 6.4
SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces po... 25 8.5
>SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 29.5 bits (63), Expect = 0.39
Identities = 12/51 (23%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = +3
Query: 447 NNIQYPTPSEIKK-ILRDHHDSTTAGHPGVARMLGRIKELYWWKNMRQDIE 596
+ I P +++ + I++ +H+ HPG+ + I + WK +R+ I+
Sbjct: 901 DQILLPNDTQLTRTIIKKYHEEGKLIHPGIELLTNIILRRFTWKGIRKQIQ 951
>SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 29.5 bits (63), Expect = 0.39
Identities = 12/51 (23%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = +3
Query: 447 NNIQYPTPSEIKK-ILRDHHDSTTAGHPGVARMLGRIKELYWWKNMRQDIE 596
+ I P +++ + I++ +H+ HPG+ + I + WK +R+ I+
Sbjct: 901 DQILLPNDTQLTRTIIKKYHEEGKLIHPGIELLTNIILRRFTWKGIRKQIQ 951
>SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 29.5 bits (63), Expect = 0.39
Identities = 12/51 (23%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = +3
Query: 447 NNIQYPTPSEIKK-ILRDHHDSTTAGHPGVARMLGRIKELYWWKNMRQDIE 596
+ I P +++ + I++ +H+ HPG+ + I + WK +R+ I+
Sbjct: 901 DQILLPNDTQLTRTIIKKYHEEGKLIHPGIELLTNIILRRFTWKGIRKQIQ 951
>SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 29.5 bits (63), Expect = 0.39
Identities = 12/51 (23%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = +3
Query: 447 NNIQYPTPSEIKK-ILRDHHDSTTAGHPGVARMLGRIKELYWWKNMRQDIE 596
+ I P +++ + I++ +H+ HPG+ + I + WK +R+ I+
Sbjct: 901 DQILLPNDTQLTRTIIKKYHEEGKLIHPGIELLTNIILRRFTWKGIRKQIQ 951
>SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 29.5 bits (63), Expect = 0.39
Identities = 12/51 (23%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = +3
Query: 447 NNIQYPTPSEIKK-ILRDHHDSTTAGHPGVARMLGRIKELYWWKNMRQDIE 596
+ I P +++ + I++ +H+ HPG+ + I + WK +R+ I+
Sbjct: 901 DQILLPNDTQLTRTIIKKYHEEGKLIHPGIELLTNIILRRFTWKGIRKQIQ 951
>SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 29.5 bits (63), Expect = 0.39
Identities = 12/51 (23%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = +3
Query: 447 NNIQYPTPSEIKK-ILRDHHDSTTAGHPGVARMLGRIKELYWWKNMRQDIE 596
+ I P +++ + I++ +H+ HPG+ + I + WK +R+ I+
Sbjct: 901 DQILLPNDTQLTRTIIKKYHEEGKLIHPGIELLTNIILRRFTWKGIRKQIQ 951
>SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 29.5 bits (63), Expect = 0.39
Identities = 12/51 (23%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = +3
Query: 447 NNIQYPTPSEIKK-ILRDHHDSTTAGHPGVARMLGRIKELYWWKNMRQDIE 596
+ I P +++ + I++ +H+ HPG+ + I + WK +R+ I+
Sbjct: 901 DQILLPNDTQLTRTIIKKYHEEGKLIHPGIELLTNIILRRFTWKGIRKQIQ 951
>SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1333
Score = 29.5 bits (63), Expect = 0.39
Identities = 12/51 (23%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = +3
Query: 447 NNIQYPTPSEIKK-ILRDHHDSTTAGHPGVARMLGRIKELYWWKNMRQDIE 596
+ I P +++ + I++ +H+ HPG+ + I + WK +R+ I+
Sbjct: 901 DQILLPNDTQLTRTIIKKYHEEGKLIHPGIELLTNIILRRFTWKGIRKQIQ 951
>SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 29.5 bits (63), Expect = 0.39
Identities = 12/51 (23%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = +3
Query: 447 NNIQYPTPSEIKK-ILRDHHDSTTAGHPGVARMLGRIKELYWWKNMRQDIE 596
+ I P +++ + I++ +H+ HPG+ + I + WK +R+ I+
Sbjct: 901 DQILLPNDTQLTRTIIKKYHEEGKLIHPGIELLTNIILRRFTWKGIRKQIQ 951
>SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 29.5 bits (63), Expect = 0.39
Identities = 12/51 (23%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = +3
Query: 447 NNIQYPTPSEIKK-ILRDHHDSTTAGHPGVARMLGRIKELYWWKNMRQDIE 596
+ I P +++ + I++ +H+ HPG+ + I + WK +R+ I+
Sbjct: 901 DQILLPNDTQLTRTIIKKYHEEGKLIHPGIELLTNIILRRFTWKGIRKQIQ 951
>SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 29.5 bits (63), Expect = 0.39
Identities = 12/51 (23%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = +3
Query: 447 NNIQYPTPSEIKK-ILRDHHDSTTAGHPGVARMLGRIKELYWWKNMRQDIE 596
+ I P +++ + I++ +H+ HPG+ + I + WK +R+ I+
Sbjct: 901 DQILLPNDTQLTRTIIKKYHEEGKLIHPGIELLTNIILRRFTWKGIRKQIQ 951
>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 529
Score = 27.9 bits (59), Expect = 1.2
Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 2/56 (3%)
Frame = +3
Query: 273 IFNVLRCYRD--MITTWYSEEKECAISDFSDPYTKLSFTKIYNIVAFLFHDTQIKV 434
I +L C R + + W EK CA F DP +F + + T++KV
Sbjct: 128 IDEILSCVRTGPIESAWILPEKNCAFISFLDPSHATAFFQDAALKRLTIRGTEVKV 183
>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1826
Score = 27.9 bits (59), Expect = 1.2
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +3
Query: 423 QIKVNIYHNNIQYPTPSEIKKILRDHHDS 509
Q++ N +NNIQ+P PS + + DS
Sbjct: 32 QLQSNDQYNNIQHPAPSFANPFIHEQDDS 60
>SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 867
Score = 27.1 bits (57), Expect = 2.1
Identities = 12/40 (30%), Positives = 18/40 (45%)
Frame = +3
Query: 447 NNIQYPTPSEIKKILRDHHDSTTAGHPGVARMLGRIKELY 566
NNI YPTP ++K A + R+ +E+Y
Sbjct: 107 NNINYPTPERLQKSSASRKSGRMARSQELPRITSSNREIY 146
>SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 761
Score = 26.6 bits (56), Expect = 2.8
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = +3
Query: 435 NIYHNNIQ-YPTPSEIKKILRDHHDSTTAGHP 527
N YH I TPS + L +++DSTT G P
Sbjct: 298 NEYHKGIPPLTTPSLYSQRLSNNYDSTTPGFP 329
>SPAC6F6.12 |||autophagy associated protein
Atg24|Schizosaccharomyces pombe|chr 1|||Manual
Length = 401
Score = 26.2 bits (55), Expect = 3.7
Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Frame = +3
Query: 24 TNIQEFNDSLLKAKCKLIAYPTSIDL--DESVPYCSEIIEMSTTMPDIREVERELYSFY 194
+ + E +DSLL A KL PT D+ D + I + ++ + +E+ L S Y
Sbjct: 153 SKLDEISDSLLNAFSKLKEEPTEFDIQRDHVQQFMFGISNLEGSIQKLLRLEKALESDY 211
>SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase
Ogm4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 778
Score = 26.2 bits (55), Expect = 3.7
Identities = 14/48 (29%), Positives = 22/48 (45%)
Frame = +3
Query: 87 TSIDLDESVPYCSEIIEMSTTMPDIREVERELYSFYSTGNASHLFTHL 230
T++ +DES E M D + +R LY+ S+ H TH+
Sbjct: 445 TTVSVDESAGKKHEYTLFQVVMSDNTDPQRPLYTKASSFKLIHKLTHV 492
>SPAC227.07c |pab1||protein phosphatase regulatory subunit
Pab1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 463
Score = 25.4 bits (53), Expect = 6.4
Identities = 11/31 (35%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Frame = +3
Query: 441 YHNNIQYP--TPSEIKKILRDHHDSTTAGHP 527
+H+ +Q P TPS+++ +HHD A +P
Sbjct: 137 FHSPMQGPLTTPSQLRLPRLNHHDMIIAAYP 167
>SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1496
Score = 25.4 bits (53), Expect = 6.4
Identities = 11/37 (29%), Positives = 17/37 (45%)
Frame = -3
Query: 329 FLAIPCSYHVTVTT*NIKNIFIRKLVVKMNTDKQMCK 219
FLA+P + + K+ R + +K N D CK
Sbjct: 681 FLALPATVTTSANPLGFKSTIQRPIPIKNNEDSDSCK 717
>SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 270
Score = 25.0 bits (52), Expect = 8.5
Identities = 11/40 (27%), Positives = 19/40 (47%)
Frame = +3
Query: 207 ASHLFTHLFVRVHFYDEFTYKDIFNVLRCYRDMITTWYSE 326
A +F + E +YKD +++ RD +T W S+
Sbjct: 196 AKQVFDEAISELDSLSEESYKDSTLIMQLLRDNLTLWTSD 235
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,527,768
Number of Sequences: 5004
Number of extensions: 53911
Number of successful extensions: 155
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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