Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0299
         (601 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY089684-1|AAL90422.1|  370|Drosophila melanogaster RH61266p pro...    45   9e-05
AF541949-2|AAN34652.1|  826|Drosophila melanogaster pol protein ...    45   9e-05
AF420242-1|AAL16060.1|  826|Drosophila melanogaster RNA-directed...    45   9e-05
X04132-4|CAA27750.1| 1237|Drosophila melanogaster protein ( Dros...    38   0.008
AY928609-2|AAX28841.1| 1000|Drosophila melanogaster RNA-dependen...    38   0.008
AY095181-1|AAM12274.1|  320|Drosophila melanogaster GM07634p pro...    38   0.008
AY180916-3|AAN87268.1|  994|Drosophila melanogaster ORF3 protein.      37   0.018
BT025105-1|ABE73276.1|  358|Drosophila melanogaster IP10818p pro...    33   0.22 
S68526-1|AAD14015.2|  624|Drosophila melanogaster pol polyprotei...    32   0.52 
X95908-1|CAA65152.1| 1494|Drosophila melanogaster orf protein.         29   4.8  
AF364550-2|AAK52058.1| 1065|Drosophila melanogaster RNA-directed...    29   4.8  
AE014296-2950|AAF49312.2| 1660|Drosophila melanogaster CG6052-PA...    29   6.4  

>AY089684-1|AAL90422.1|  370|Drosophila melanogaster RH61266p
           protein.
          Length = 370

 Score = 44.8 bits (101), Expect = 9e-05
 Identities = 20/45 (44%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
 Frame = +3

Query: 465 TPSEIKKILRDHHDSTT-AGHPGVARMLGRIKELYWWKNMRQDIE 596
           T  EI+ IL  +HD     GH G+ R L +IK  Y+WKNM + I+
Sbjct: 22  TEKEIQSILSTYHDDPIQGGHTGITRTLAKIKRHYYWKNMTRHIK 66


>AF541949-2|AAN34652.1|  826|Drosophila melanogaster pol protein
           protein.
          Length = 826

 Score = 44.8 bits (101), Expect = 9e-05
 Identities = 20/45 (44%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
 Frame = +3

Query: 465 TPSEIKKILRDHHDSTT-AGHPGVARMLGRIKELYWWKNMRQDIE 596
           T  EI+ IL  +HD     GH G+ R L +IK  Y+WKNM + I+
Sbjct: 478 TEKEIQSILSTYHDDLIQGGHTGITRTLAKIKRHYYWKNMTRHIK 522


>AF420242-1|AAL16060.1|  826|Drosophila melanogaster RNA-directed
           DNA polymerase protein.
          Length = 826

 Score = 44.8 bits (101), Expect = 9e-05
 Identities = 20/45 (44%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
 Frame = +3

Query: 465 TPSEIKKILRDHHDSTT-AGHPGVARMLGRIKELYWWKNMRQDIE 596
           T  EI+ IL  +HD     GH G+ R L +IK  Y+WKNM + I+
Sbjct: 478 TEKEIQSILSTYHDDPIQGGHTGITRTLAKIKRHYYWKNMTRHIK 522


>X04132-4|CAA27750.1| 1237|Drosophila melanogaster protein (
            Drosophila retrotransposon412 genome. ).
          Length = 1237

 Score = 38.3 bits (85), Expect = 0.008
 Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
 Frame = +3

Query: 426  IKVNIYHNNIQYPTPSEIKKILRD-HHDSTTAGHPGVARMLGRIKELYWWKNMRQDIE 596
            +KV + +   Q     E + IL   H D    GH G+ + L ++K  Y+WKNM + I+
Sbjct: 876  LKVALLNPVTQINNEKEKEAILSTLHDDPIQGGHTGITKTLAKVKRHYYWKNMSKYIK 933


>AY928609-2|AAX28841.1| 1000|Drosophila melanogaster RNA-dependent
           DNA polymerase protein.
          Length = 1000

 Score = 38.3 bits (85), Expect = 0.008
 Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
 Frame = +3

Query: 426 IKVNIYHNNIQYPTPSEIKKILRD-HHDSTTAGHPGVARMLGRIKELYWWKNMRQDIE 596
           +KV + +   Q     E + IL   H D    GH G+ + L ++K  Y+WKNM + I+
Sbjct: 639 LKVALLNPVTQINNEKEKEAILSTLHDDPIQGGHTGITKTLAKVKRHYYWKNMSKYIK 696


>AY095181-1|AAM12274.1|  320|Drosophila melanogaster GM07634p
           protein.
          Length = 320

 Score = 38.3 bits (85), Expect = 0.008
 Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
 Frame = +3

Query: 426 IKVNIYHNNIQYPTPSEIKKILRD-HHDSTTAGHPGVARMLGRIKELYWWKNMRQDIE 596
           +KV + +   Q     E + IL   H D    GH G+ + L ++K  Y+WKNM + I+
Sbjct: 27  LKVALLNPVTQINNEKEKEAILSTLHDDPIQGGHTGITKTLAKVKRHYYWKNMSKYIK 84


>AY180916-3|AAN87268.1|  994|Drosophila melanogaster ORF3 protein.
          Length = 994

 Score = 37.1 bits (82), Expect = 0.018
 Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = +3

Query: 471 SEIKKILRDHHDSTT-AGHPGVARMLGRIKELYWWKNMRQDI 593
           ++IK+IL   HD     GH G++R   +IK  Y+W  M + I
Sbjct: 649 AQIKEILTKFHDDPIEGGHTGISRTQSKIKRFYYWPQMTKTI 690


>BT025105-1|ABE73276.1|  358|Drosophila melanogaster IP10818p
           protein.
          Length = 358

 Score = 33.5 bits (73), Expect = 0.22
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +3

Query: 498 HHDSTTAGHPGVARMLGRIKELYWWKNMRQDIEN 599
           H D    GH G+ + L ++K  Y+WK   +   N
Sbjct: 75  HDDPIQGGHTGITKTLAKVKRYYYWKGNAKTTRN 108


>S68526-1|AAD14015.2|  624|Drosophila melanogaster pol polyprotein
           protein.
          Length = 624

 Score = 32.3 bits (70), Expect = 0.52
 Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = +3

Query: 474 EIKKILRDHHDSTT-AGHPGVARMLGRIKELYWWKNMRQDI 593
           +IK IL  +HD  +  GH G++R L ++K    W  M + I
Sbjct: 279 QIKAILSKYHDDPSEGGHSGISRTLRKMKNCCCWPRMTKAI 319


>X95908-1|CAA65152.1| 1494|Drosophila melanogaster orf protein.
          Length = 1494

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 14/48 (29%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
 Frame = +3

Query: 447  NNIQYPTPSEIKK-ILRDHHDSTTAGHPGVARMLGRIKELYWWKNMRQ 587
            N + +  P E+++ +L  +H+    GH G  +M+  I + YW+ N++Q
Sbjct: 1187 NRLLFYVPIEMEEQVLYKYHNEL--GHVGRDKMIEAIMKNYWFPNLKQ 1232


>AF364550-2|AAK52058.1| 1065|Drosophila melanogaster RNA-directed
           DNA polymerase protein.
          Length = 1065

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 18/58 (31%), Positives = 31/58 (53%)
 Frame = +3

Query: 426 IKVNIYHNNIQYPTPSEIKKILRDHHDSTTAGHPGVARMLGRIKELYWWKNMRQDIEN 599
           +K NI   +I+  T SE K+I+   H      HPG+ +     KE Y++ + ++ I+N
Sbjct: 735 MKSNIKLKDIE--TYSEFKEIIIKSHRELL--HPGIEKQTNLFKEKYYYPDYQKLIQN 788


>AE014296-2950|AAF49312.2| 1660|Drosophila melanogaster CG6052-PA
           protein.
          Length = 1660

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 28/102 (27%), Positives = 48/102 (47%)
 Frame = -1

Query: 346 DIAHSFSSLYHVVIMSR*QRKTLKISLYVNSS*K*TRTNKCVNK*LALPVE*NEYSSLST 167
           +I  SF ++ H    ++  R+  ++ + + +  K     K V K ++L +  NE + L  
Sbjct: 449 NIVPSFQTILHGSAKAKSCRRAREVGIQLFNLQKNYGKLKAV-KGISLKMHRNEITVLLG 507

Query: 166 SRMSGIVVDISMISEQYGTDSSRSIEVG*AISLHLALSRESL 41
              +G    I+MI+      S  +I  G  I  HLA +RESL
Sbjct: 508 HNGAGKTTTINMITGIVKPTSGTAIVNGYDIRTHLAKARESL 549


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,607,329
Number of Sequences: 53049
Number of extensions: 527068
Number of successful extensions: 1303
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1280
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1303
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2441585082
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)