Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0299
(601 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and en... 35 0.051
L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RET... 35 0.051
L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RET... 35 0.051
Z81133-3|CAB03443.3| 527|Caenorhabditis elegans Hypothetical pr... 29 1.9
Z70757-2|CAA94798.1| 611|Caenorhabditis elegans Hypothetical pr... 29 3.3
DQ178244-1|ABA18183.1| 521|Caenorhabditis elegans putative sulf... 29 3.3
AY954525-1|AAX34433.1| 611|Caenorhabditis elegans anion transpo... 29 3.3
AY887917-1|AAX34429.1| 611|Caenorhabditis elegans anion transpo... 29 3.3
U50300-7|AAC48106.1| 645|Caenorhabditis elegans Hypothetical pr... 28 5.9
AF016421-6|AAT92074.1| 984|Caenorhabditis elegans Hypothetical ... 27 7.7
AF016421-5|AAO12429.1| 1008|Caenorhabditis elegans Hypothetical ... 27 7.7
AF016421-4|AAC25789.1| 1067|Caenorhabditis elegans Hypothetical ... 27 7.7
AF016421-3|AAM45374.1| 1051|Caenorhabditis elegans Hypothetical ... 27 7.7
>U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and env
protein precursor protein.
Length = 2272
Score = 34.7 bits (76), Expect = 0.051
Identities = 19/71 (26%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Frame = +3
Query: 390 YNIVAFLFHDTQIKVNIYHNNIQYPTPSEIKK-ILRDHHDSTTAGHPGVARMLGRIKELY 566
Y IV + +T+I+ + P +I+ +L++ H+ AGH G+ +M + +
Sbjct: 1526 YKIVGGVLKNTEIE-----EQSRSVVPEKIRTPLLKELHEGMLAGHFGIKKMWRMVHRKF 1580
Query: 567 WWKNMRQDIEN 599
+W MR +EN
Sbjct: 1581 YWPQMRVCVEN 1591
>L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RETR-1
protein, isoforma protein.
Length = 2175
Score = 34.7 bits (76), Expect = 0.051
Identities = 19/71 (26%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Frame = +3
Query: 390 YNIVAFLFHDTQIKVNIYHNNIQYPTPSEIKK-ILRDHHDSTTAGHPGVARMLGRIKELY 566
Y IV + +T+I+ + P +I+ +L++ H+ AGH G+ +M + +
Sbjct: 1429 YKIVGGVLKNTEIE-----EQSRSVVPEKIRTPLLKELHEGMLAGHFGIKKMWRMVHRKF 1483
Query: 567 WWKNMRQDIEN 599
+W MR +EN
Sbjct: 1484 YWPQMRVCVEN 1494
>L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RETR-1
protein, isoformb protein.
Length = 2186
Score = 34.7 bits (76), Expect = 0.051
Identities = 19/71 (26%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Frame = +3
Query: 390 YNIVAFLFHDTQIKVNIYHNNIQYPTPSEIKK-ILRDHHDSTTAGHPGVARMLGRIKELY 566
Y IV + +T+I+ + P +I+ +L++ H+ AGH G+ +M + +
Sbjct: 1440 YKIVGGVLKNTEIE-----EQSRSVVPEKIRTPLLKELHEGMLAGHFGIKKMWRMVHRKF 1494
Query: 567 WWKNMRQDIEN 599
+W MR +EN
Sbjct: 1495 YWPQMRVCVEN 1505
>Z81133-3|CAB03443.3| 527|Caenorhabditis elegans Hypothetical
protein T28B8.5 protein.
Length = 527
Score = 29.5 bits (63), Expect = 1.9
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = +3
Query: 252 DEFTYKDIFNVLRCYRDMITTWYSEEKECAISDFSDPY 365
+E Y D ++ Y DM+ + K C I+DF+D Y
Sbjct: 144 NEKQYNDAADIAYSYDDMVVSCTYNAKTCNITDFNDFY 181
>Z70757-2|CAA94798.1| 611|Caenorhabditis elegans Hypothetical
protein ZK287.2 protein.
Length = 611
Score = 28.7 bits (61), Expect = 3.3
Identities = 16/43 (37%), Positives = 24/43 (55%)
Frame = +3
Query: 180 LYSFYSTGNASHLFTHLFVRVHFYDEFTYKDIFNVLRCYRDMI 308
L S ++TG A H+FT +V ++ I ++R YRDMI
Sbjct: 177 LVSGFTTGAAVHVFTSQLNKVFGIKLPRHEGIGMIVRMYRDMI 219
>DQ178244-1|ABA18183.1| 521|Caenorhabditis elegans putative sulfate
transporter prestinprotein.
Length = 521
Score = 28.7 bits (61), Expect = 3.3
Identities = 16/43 (37%), Positives = 24/43 (55%)
Frame = +3
Query: 180 LYSFYSTGNASHLFTHLFVRVHFYDEFTYKDIFNVLRCYRDMI 308
L S ++TG A H+FT +V ++ I ++R YRDMI
Sbjct: 87 LVSGFTTGAAVHVFTSQLNKVFGIKLPRHEGIGMIVRMYRDMI 129
>AY954525-1|AAX34433.1| 611|Caenorhabditis elegans anion
transporter SULP-8a protein.
Length = 611
Score = 28.7 bits (61), Expect = 3.3
Identities = 16/43 (37%), Positives = 24/43 (55%)
Frame = +3
Query: 180 LYSFYSTGNASHLFTHLFVRVHFYDEFTYKDIFNVLRCYRDMI 308
L S ++TG A H+FT +V ++ I ++R YRDMI
Sbjct: 177 LVSGFTTGAAVHVFTSQLNKVFGIKLPRHEGIGMIVRMYRDMI 219
>AY887917-1|AAX34429.1| 611|Caenorhabditis elegans anion
transporter SULP-8b protein.
Length = 611
Score = 28.7 bits (61), Expect = 3.3
Identities = 16/43 (37%), Positives = 24/43 (55%)
Frame = +3
Query: 180 LYSFYSTGNASHLFTHLFVRVHFYDEFTYKDIFNVLRCYRDMI 308
L S ++TG A H+FT +V ++ I ++R YRDMI
Sbjct: 177 LVSGFTTGAAVHVFTSQLNKVFGIKLPRHEGIGMIVRMYRDMI 219
>U50300-7|AAC48106.1| 645|Caenorhabditis elegans Hypothetical
protein R03H4.5 protein.
Length = 645
Score = 27.9 bits (59), Expect = 5.9
Identities = 15/55 (27%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Frame = +3
Query: 351 FSDPYTKLSFTKIYNIV-AFLFHDTQIKVNI-YHNNIQYPTPSEIKKILRDHHDS 509
F Y KL ++ +V F+ + ++ ++ YH +Y SEI++I+ +H S
Sbjct: 333 FEKQYLKLEMRAVFPLVFLFIAANAYLQYSVRYHTFWKYNYTSEIQEIINQNHKS 387
>AF016421-6|AAT92074.1| 984|Caenorhabditis elegans Hypothetical
protein F44E7.4d protein.
Length = 984
Score = 27.5 bits (58), Expect = 7.7
Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Frame = +3
Query: 450 NIQYPTPSEIKKILRD--HHDSTTAGHPGVARMLGRIKELYWWKNMRQD 590
+I +P P + L H+ S GH G +L +K L W +++ D
Sbjct: 336 SISFPFPDLNGEFLSQPGHYISHLIGHEGPGSLLSELKRLGWVSSLQSD 384
>AF016421-5|AAO12429.1| 1008|Caenorhabditis elegans Hypothetical
protein F44E7.4c protein.
Length = 1008
Score = 27.5 bits (58), Expect = 7.7
Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Frame = +3
Query: 450 NIQYPTPSEIKKILRD--HHDSTTAGHPGVARMLGRIKELYWWKNMRQD 590
+I +P P + L H+ S GH G +L +K L W +++ D
Sbjct: 277 SISFPFPDLNGEFLSQPGHYISHLIGHEGPGSLLSELKRLGWVSSLQSD 325
>AF016421-4|AAC25789.1| 1067|Caenorhabditis elegans Hypothetical
protein F44E7.4a protein.
Length = 1067
Score = 27.5 bits (58), Expect = 7.7
Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Frame = +3
Query: 450 NIQYPTPSEIKKILRD--HHDSTTAGHPGVARMLGRIKELYWWKNMRQD 590
+I +P P + L H+ S GH G +L +K L W +++ D
Sbjct: 336 SISFPFPDLNGEFLSQPGHYISHLIGHEGPGSLLSELKRLGWVSSLQSD 384
>AF016421-3|AAM45374.1| 1051|Caenorhabditis elegans Hypothetical
protein F44E7.4b protein.
Length = 1051
Score = 27.5 bits (58), Expect = 7.7
Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Frame = +3
Query: 450 NIQYPTPSEIKKILRD--HHDSTTAGHPGVARMLGRIKELYWWKNMRQD 590
+I +P P + L H+ S GH G +L +K L W +++ D
Sbjct: 336 SISFPFPDLNGEFLSQPGHYISHLIGHEGPGSLLSELKRLGWVSSLQSD 384
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,773,707
Number of Sequences: 27780
Number of extensions: 297756
Number of successful extensions: 755
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 734
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 755
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1279376318
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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