Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0299
         (601 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                23   2.3  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    23   3.0  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     22   5.3  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    22   5.3  
DQ435331-1|ABD92646.1|  135|Apis mellifera OBP14 protein.              21   7.0  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   7.0  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    21   7.0  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    21   9.2  
AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II ...    21   9.2  

>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = +3

Query: 78  AYPTSIDLDESVPYCSEIIEMSTTMPDIREVE 173
           A PTSI         +E I+  TT  D REV+
Sbjct: 126 ASPTSIPYATRAEIKTESIQPETTKVDTREVQ 157


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -1

Query: 211 LALPVE*NEYSSLSTSRMSGIVVDIS 134
           + + +E  E  SLSTS  SGI+  +S
Sbjct: 298 MGVKIEPAEAESLSTSGSSGILTPVS 323


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -2

Query: 237 GQTNV*INDWRY 202
           G TN+ IN WR+
Sbjct: 61  GSTNIGINKWRF 72


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 7/17 (41%), Positives = 14/17 (82%)
 Frame = +1

Query: 190 FILPVTPVIYLHICLSV 240
           F+LP+T +I L+I +++
Sbjct: 230 FVLPMTIIIVLYILIAI 246


>DQ435331-1|ABD92646.1|  135|Apis mellifera OBP14 protein.
          Length = 135

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 7/21 (33%), Positives = 15/21 (71%)
 Frame = -3

Query: 266 IRKLVVKMNTDKQMCK*MTGV 204
           I +L  +++T++ +CK  TG+
Sbjct: 19  IEELKTRLHTEQSVCKTETGI 39


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 9/30 (30%), Positives = 19/30 (63%)
 Frame = +1

Query: 463  LRLPKSKKY*EITMIPRLQVTPESLVC*DE 552
            + +P+S    E+ +  ++ V+PE+L+  DE
Sbjct: 1230 VEMPRSNADYEVCIGSQIMVSPETLLSYDE 1259


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
            protein.
          Length = 1143

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -1

Query: 118  YGTDSSRSIEVG*AISLHLALSRES 44
            Y  +    +E+G    + LALSRES
Sbjct: 1016 YRQEKEEMVELGVLDKIFLALSRES 1040


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = +2

Query: 194 FYR*RQSFIYTFVCPCSFLR 253
           FY  + S+++T   P  F+R
Sbjct: 92  FYNGKHSYLHTITSPNKFVR 111


>AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II
           protein.
          Length = 190

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = +3

Query: 189 FYSTGNASHLFTHLFVRVH 245
           FYS  +ASH    +   VH
Sbjct: 5   FYSEADASHCIQQILESVH 23


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,783
Number of Sequences: 438
Number of extensions: 3970
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17604432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)