Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0299
         (601 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g36800.1 68415.m04513 UDP-glucoronosyl/UDP-glucosyl transfera...    29   3.1  
At2g36760.1 68415.m04509 UDP-glucoronosyl/UDP-glucosyl transfera...    29   3.1  
At5g19910.1 68418.m02369 SOH1 family protein contains Pfam profi...    28   5.4  
At3g07080.1 68416.m00841 membrane protein contains Pfam profile:...    28   5.4  
At4g09140.1 68417.m01509 DNA mismatch repair protein MLH1 (MLH1)...    27   7.2  
At5g62800.1 68418.m07883 seven in absentia (SINA) family protein...    27   9.5  
At5g28237.1 68418.m03422 tryptophan synthase, beta subunit, puta...    27   9.5  
At5g09540.1 68418.m01105 DNAJ heat shock N-terminal domain-conta...    27   9.5  
At4g00900.1 68417.m00122 calcium-transporting ATPase 2, endoplas...    27   9.5  
At3g52170.1 68416.m05727 expressed protein                             27   9.5  
At2g42290.1 68415.m05235 leucine-rich repeat family protein cont...    27   9.5  
At1g62720.1 68414.m07079 pentatricopeptide (PPR) repeat-containi...    27   9.5  

>At2g36800.1 68415.m04513 UDP-glucoronosyl/UDP-glucosyl transferase
           family protein contains Pfam profile: PF00201
           UDP-glucoronosyl and UDP-glucosyl transferase
          Length = 495

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 14/27 (51%), Positives = 15/27 (55%)
 Frame = +3

Query: 336 CAISDFSDPYTKLSFTKIYNIVAFLFH 416
           C ISDF  PYT     K +NI   LFH
Sbjct: 124 CLISDFCLPYTS-KIAKKFNIPKILFH 149


>At2g36760.1 68415.m04509 UDP-glucoronosyl/UDP-glucosyl transferase
           family protein contains Pfam profile: PF00201
           UDP-glucoronosyl and UDP-glucosyl transferase
          Length = 496

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 4/43 (9%)
 Frame = +3

Query: 336 CAISDFSDPYTKLSFTKIYNIVAFLFHDTQ----IKVNIYHNN 452
           C ISDF  PYT     K +NI   +FH       + ++I H N
Sbjct: 126 CLISDFCLPYTS-KIAKRFNIPKIVFHGVSCFCLLSMHILHRN 167


>At5g19910.1 68418.m02369 SOH1 family protein contains Pfam profile:
           PF05669 SOH1
          Length = 196

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 14/50 (28%), Positives = 24/50 (48%)
 Frame = +3

Query: 441 YHNNIQYPTPSEIKKILRDHHDSTTAGHPGVARMLGRIKELYWWKNMRQD 590
           Y   I YP      ++L++ +  T   HP    +  R ++ Y+WKN R +
Sbjct: 77  YIKFIMYPHCLYFLELLQNPNFRTAMAHPANKELAHR-QQFYYWKNYRNN 125


>At3g07080.1 68416.m00841 membrane protein contains Pfam profile:
           PF00892 Integral membrane protein
          Length = 438

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
 Frame = +3

Query: 204 NASHLFTHLFVRVHFYDEFTYKDIFNVLRCYRD--MITTWYSEEKECAIS 347
           +AS LFT L   +   ++FT+  +F+VL C     +++   SE K  A++
Sbjct: 198 SASSLFTFLVSLIFLGEKFTWLKLFSVLLCMSGTIIVSMGDSESKSNAVA 247


>At4g09140.1 68417.m01509 DNA mismatch repair protein MLH1 (MLH1)
           identical to MLH1 protein [Arabidopsis thaliana]
           GI:3893081
          Length = 737

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 15/55 (27%), Positives = 24/55 (43%)
 Frame = +3

Query: 6   SKDPFNTNIQEFNDSLLKAKCKLIAYPTSIDLDESVPYCSEIIEMSTTMPDIREV 170
           +KD     I E N  LLK K +++    S+ +D S       + +    PD+  V
Sbjct: 552 TKDDLKERIAEMNTELLKEKAEMLEEYFSVHIDSSANLSRLPVILDQYTPDMDRV 606


>At5g62800.1 68418.m07883 seven in absentia (SINA) family protein
           similar to SIAH1 protein [Brassica napus var. napus]
           GI:7657876; contains Pfam profile PF03145: Seven in
           absentia protein family
          Length = 348

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +3

Query: 321 SEEKECAISDFSDPYTKLSFTKIYNIV 401
           S EKEC  S  S P  + ++T  YNI+
Sbjct: 121 SHEKECNYSQCSCPNLECNYTGSYNII 147


>At5g28237.1 68418.m03422 tryptophan synthase, beta subunit,
           putative similar to SP|P14671 Tryptophan synthase beta
           chain 1, chloroplast precursor (EC 4.2.1.20)
           {Arabidopsis thaliana}; contains Pfam profile PF00291:
           Pyridoxal-phosphate dependent enzyme
          Length = 465

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 12/43 (27%), Positives = 21/43 (48%)
 Frame = +3

Query: 432 VNIYHNNIQYPTPSEIKKILRDHHDSTTAGHPGVARMLGRIKE 560
           V +YH ++ Y    +  +IL+ H       +PGV   +  +KE
Sbjct: 345 VGVYHGSMSYLLQDDQGQILKPHSVGVGLEYPGVGPEISFMKE 387


>At5g09540.1 68418.m01105 DNAJ heat shock N-terminal
           domain-containing protein low similarity to AHM1
           [Triticum aestivum] GI:6691467; contains Pfam profile
           PF00226 DnaJ domain
          Length = 280

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 10/35 (28%), Positives = 20/35 (57%)
 Frame = +3

Query: 33  QEFNDSLLKAKCKLIAYPTSIDLDESVPYCSEIIE 137
           ++F DS L+++ + +  PT+     + PYC  + E
Sbjct: 149 EKFQDSPLQSQAETLENPTATSFWTACPYCFSLFE 183


>At4g00900.1 68417.m00122 calcium-transporting ATPase 2, endoplasmic
           reticulum-type (ECA2) nearly identical to SP|O23087
           Calcium-transporting ATPase 2, endoplasmic
           reticulum-type (EC 3.6.3.8) {Arabidopsis thaliana};
           contains InterPro Accession IPR006069: Cation
           transporting ATPase
          Length = 1054

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +3

Query: 315 WYSEEKECAISDFSDPYTKLSFTKIYN 395
           WY++     IS  SD +T +SFT++ N
Sbjct: 880 WYTQASFLGISLISDGHTLVSFTQLQN 906


>At3g52170.1 68416.m05727 expressed protein
          Length = 499

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +2

Query: 509 HDCRSPRSRSYVRTNKRTILVEKYATRHRKL 601
           HD    R+R+ +   +R  LVE +  +H+KL
Sbjct: 19  HDSVGKRTRNRIPKEERKTLVESFIKKHQKL 49


>At2g42290.1 68415.m05235 leucine-rich repeat family protein
           contains protein kinase domain, Pfam:PF00069; contains
           leucine-rich repeats, Pfam:PF00560
          Length = 646

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 11/40 (27%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
 Frame = +3

Query: 408 LFHDTQIK-VNIYHNNIQYPTPSEIKKILRDHHDSTTAGH 524
           LF  T+++ +++ HN++  P P++IK +   +H   ++ H
Sbjct: 111 LFEATKLRYIDLSHNSLSGPIPAQIKSMKSLNHLDFSSNH 150


>At1g62720.1 68414.m07079 pentatricopeptide (PPR) repeat-containing
           protein contains multiple PPR repeats Pfam Profile:
           PF01535
          Length = 426

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = +3

Query: 339 AISDFSDPYTKLSFTKIYNIVAFLFHDTQIKVNIYHNNIQY 461
           +I DFS   +K++ +K Y++V  LFH  ++   I H+   Y
Sbjct: 9   SIVDFSKVLSKIAKSKNYDLVISLFHHMEV-CGIGHDLYSY 48


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,541,539
Number of Sequences: 28952
Number of extensions: 256868
Number of successful extensions: 625
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 614
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 625
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1187288784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)