Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0298
         (690 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10223| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.0  
SB_57608| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.2  
SB_30566| Best HMM Match : zf-C4_Topoisom (HMM E-Value=0.38)           28   6.2  
SB_42507| Best HMM Match : ResIII (HMM E-Value=0.75)                   28   8.2  
SB_22531| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.2  

>SB_10223| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 945

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 21/85 (24%), Positives = 44/85 (51%)
 Frame = -3

Query: 340 PAFLSQFSRRNK*EFPVSIRILKGSLHSGFTLDEHAQQFTGSLSFTNSARSKTGTRNDSF 161
           P F   F  + +  +P ++ I    +H+  T+   A+  + +L  T+S+ SK GT+ +SF
Sbjct: 105 PVFHRDFIAKLRGSYPTAL-IQPKLVHTISTVMNEAELMSLNLD-TDSSASKDGTKLESF 162

Query: 160 AIMMHNKLTRLSENTRDVYRLHEIA 86
              +    + +S+N +++ +   IA
Sbjct: 163 TEDIQQSNSYISDNLKELLKPDHIA 187


>SB_57608| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 321

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 14/58 (24%), Positives = 25/58 (43%)
 Frame = +3

Query: 351 PYLTASKSVCKKEKKYIDGELVVSRGCTWKRQDDFEVGCPTSRNEANEVNLFCQTCDY 524
           P +T    + ++ K   DG+     GC  K++ +   G      +A +VN   Q  +Y
Sbjct: 131 PSITLDIPITEEGKVKKDGDKAKKEGCKLKKEGETTKGVTFEMPDARDVNKLVQATNY 188


>SB_30566| Best HMM Match : zf-C4_Topoisom (HMM E-Value=0.38)
          Length = 597

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
 Frame = -1

Query: 210 PSRIAQEAKRAQETIVLPL*CTINS--LGYLKTRETSIVC 97
           PS +  +  R  E I++   C +    LGYL TR   +VC
Sbjct: 150 PSELGHKLDRVAEVIIIDECCKVLRAILGYLATRPCQVVC 189


>SB_42507| Best HMM Match : ResIII (HMM E-Value=0.75)
          Length = 1056

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 6/44 (13%)
 Frame = -1

Query: 210 PSRIAQEAKRAQETIVLPL*CTINS------LGYLKTRETSIVC 97
           PS +  + +R  E I++   C + +      LGYL TR   +VC
Sbjct: 714 PSEVGHKLERLAEVIIIDECCKVQTKVLRAILGYLATRPCQVVC 757


>SB_22531| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 579

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 15/33 (45%), Positives = 20/33 (60%)
 Frame = +3

Query: 312 RLENCDKNAGATFPYLTASKSVCKKEKKYIDGE 410
           R ++CDK  G T   L    SVCK++K YI+ E
Sbjct: 444 RCKDCDKRFG-TKRSLFGHLSVCKRKKGYINEE 475


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,080,279
Number of Sequences: 59808
Number of extensions: 391175
Number of successful extensions: 1070
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1000
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1070
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1793485733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)