Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0298
         (690 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    25   0.51 
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    23   3.6  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   4.8  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    21   8.4  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   8.4  

>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 25.4 bits (53), Expect = 0.51
 Identities = 11/30 (36%), Positives = 13/30 (43%)
 Frame = -1

Query: 339 QHSCRSFRGGTNKNSRCRYGY*KDRCTADS 250
           Q  C  + G    N+ C Y   KD C  DS
Sbjct: 320 QVECYKYYGNIMVNAMCAYAKGKDACQMDS 349


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 7/26 (26%), Positives = 13/26 (50%)
 Frame = +2

Query: 548 HRQDDRSIARTSQPPLVEVNPIRYHH 625
           H Q    +A +S P  +++    +HH
Sbjct: 441 HHQHSTPLAHSSYPAAIQIGHTPHHH 466


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 9/32 (28%), Positives = 16/32 (50%)
 Frame = -3

Query: 175 RNDSFAIMMHNKLTRLSENTRDVYRLHEIANE 80
           R+ S   + H  LT +     D Y +H+I+ +
Sbjct: 241 RHSSTLDIDHKMLTPIKSEPIDAYEMHQISKK 272


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +3

Query: 342 ATFPYLTASKSVCKKEKK 395
           A  P + ++ S CKK+KK
Sbjct: 568 ARTPSVMSASSTCKKDKK 585


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 9/20 (45%), Positives = 10/20 (50%)
 Frame = -3

Query: 196 ARSKTGTRNDSFAIMMHNKL 137
           A  + G RN      MHNKL
Sbjct: 347 AADRPGLRNTELVERMHNKL 366


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,075
Number of Sequences: 438
Number of extensions: 3140
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21073995
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)