Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0298
         (690 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g38280.1 68418.m04615 serine/threonine protein kinase (PR5K) ...    28   5.1  
At4g39330.1 68417.m05568 mannitol dehydrogenase, putative nearly...    28   5.1  
At1g55700.1 68414.m06378 DC1 domain-containing protein contains ...    28   5.1  
At5g19110.1 68418.m02273 extracellular dermal glycoprotein-relat...    28   6.7  

>At5g38280.1 68418.m04615 serine/threonine protein kinase (PR5K)
           identical to receptor serine/threonine kinase PR5K
           gi|1235680|gb|AAC49208
          Length = 665

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
 Frame = -1

Query: 330 CRSFRGGTNKNSRC--RYGY*KDRCTADSR*TNTPNNSLVHCPSRIAQEAKRAQET 169
           C+     TN  + C   Y Y  D      R +N+PN  +  CP+ I+  ++ ++ET
Sbjct: 208 CQPTLYSTNFKNECPLAYSYAYDNENNTFRCSNSPNYVITFCPNDISSMSQPSKET 263


>At4g39330.1 68417.m05568 mannitol dehydrogenase, putative nearly
           identical to SP|P42734, probable mannitol dehydrogenase
          Length = 360

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = -3

Query: 292 VSIRILKGSLHSGFTLDEHAQQFTGSLSFTNSARSKTGTRN 170
           V + ++ GS  S  + D+  + +   +SFT +A    GT+N
Sbjct: 94  VGVGVISGSCQSCESCDQDLENYCPQMSFTYNAIGSDGTKN 134


>At1g55700.1 68414.m06378 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 679

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +3

Query: 465 CPTSRNEANEVNLFCQTCDYD 527
           C T ++   + +L C TCDYD
Sbjct: 43  CRTKKHHRTKYHLHCDTCDYD 63


>At5g19110.1 68418.m02273 extracellular dermal glycoprotein-related
           / EDGP-related similar to extracellular dermal
           glycoprotein EDGP precursor [Daucus carota] GI:285741
          Length = 405

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 19/77 (24%), Positives = 33/77 (42%), Gaps = 1/77 (1%)
 Frame = +3

Query: 216 EPVNCWACSSNVNPLCNDPFNIRIDTGNSYLFRLENCDK-NAGATFPYLTASKSVCKKEK 392
           EP N +  + NV      P N+ +D G +  +   +C K  + ++   +T   S CK   
Sbjct: 34  EPTNLFYTTFNVGSAAKSPVNLLLDLGTNLTWL--DCRKLKSLSSLRLVTCQSSTCKS-- 89

Query: 393 KYIDGELVVSRGCTWKR 443
             I G     + C +K+
Sbjct: 90  --IPGNGCAGKSCLYKQ 104


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,702,251
Number of Sequences: 28952
Number of extensions: 264740
Number of successful extensions: 731
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 717
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 731
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1467502800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)