Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0295
(674 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_1160 + 9242541-9242825 35 0.052
11_04_0144 + 14044973-14044984,14045050-14045183,14045329-140458... 33 0.21
10_08_0398 - 17588202-17589280,17590154-17590373,17593350-17593595 33 0.28
02_02_0078 + 6587491-6588021,6588160-6589151,6592430-6592607,659... 32 0.36
07_03_1486 + 26899479-26899549,26899861-26899989,26900649-269008... 31 0.84
04_04_0917 - 29404341-29404519,29404610-29404744,29404898-294052... 31 1.1
02_04_0213 + 20974712-20975413 31 1.1
04_04_0156 + 23160681-23160862,23161090-23161179,23163145-231634... 29 3.4
12_01_0626 - 5147763-5147879,5148175-5148255,5148336-5148506 29 4.5
11_01_0448 - 3469398-3469676,3470015-3470284,3470386-3470476,347... 28 7.8
05_07_0112 - 27755604-27756449,27756624-27756887,27757428-277575... 28 7.8
04_03_0582 + 17528335-17529790,17529913-17531651,17531814-175320... 28 7.8
03_05_1007 - 29637911-29638333,29640095-29640282,29640688-296407... 28 7.8
03_05_0549 - 25444234-25446792 28 7.8
>01_01_1160 + 9242541-9242825
Length = 94
Score = 35.1 bits (77), Expect = 0.052
Identities = 25/64 (39%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Frame = +3
Query: 231 TMPPLVGPSGRLAAFDDDEKAELLADTLQTQCTPSTQS-VDPVHVELVDSEVERRASLPP 407
T P + P AA D+ KA +AD ++ TPS+ S VDP E V + RRAS
Sbjct: 6 TSKPALFPDAANAAIDEAVKA--VADAVRNSFTPSSGSDVDPTTGEAVAAAAARRASKAA 63
Query: 408 SDAL 419
D L
Sbjct: 64 HDTL 67
>11_04_0144 +
14044973-14044984,14045050-14045183,14045329-14045824,
14046097-14046117,14047504-14047767,14048635-14048715
Length = 335
Score = 33.1 bits (72), Expect = 0.21
Identities = 28/82 (34%), Positives = 43/82 (52%), Gaps = 3/82 (3%)
Frame = +3
Query: 438 EVKDLIKDLRPRKAPGSDGISNRVI-KLLPV--QLIVMLASIFNAAMANCIFPAVWKEAD 608
EV +LIK ++P KAP DGI+ + K P+ Q LA+ F+A + + P ++
Sbjct: 226 EVDNLIKVIQPDKAPSPDGINGYFLKKCWPIISQEFYWLAAHFHACYTD-LQPI--NKSF 282
Query: 609 VIGIHKPGKPKNHPTSYRPISL 674
+ + K P+ YRPISL
Sbjct: 283 ITLVPKKSSPET-VNDYRPISL 303
>10_08_0398 - 17588202-17589280,17590154-17590373,17593350-17593595
Length = 514
Score = 32.7 bits (71), Expect = 0.28
Identities = 15/43 (34%), Positives = 26/43 (60%)
Frame = +3
Query: 366 LVDSEVERRASLPPSDALPPVTPMEVKDLIKDLRPRKAPGSDG 494
++ +++ S PP +AL P P+++KD+ L+PR P S G
Sbjct: 392 VIPVQIKDVQSQPPKEALSPAIPVQIKDV--QLQPRNEPVSIG 432
>02_02_0078 +
6587491-6588021,6588160-6589151,6592430-6592607,
6592635-6592794,6592992-6593158,6593246-6593869
Length = 883
Score = 32.3 bits (70), Expect = 0.36
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 4/55 (7%)
Frame = +3
Query: 423 PVTPMEVKDLIKDLRPRKAPGSDG--ISN--RVIKLLPVQLIVMLASIFNAAMAN 575
P + E+KD + + P KAPG DG + N + K P+ L +L I + +AN
Sbjct: 152 PYSDDEIKDALFQMGPTKAPGPDGRKVHNPEHLSKFRPISLCNVLYKIASKVLAN 206
>07_03_1486 + 26899479-26899549,26899861-26899989,26900649-26900834,
26901025-26901247,26901662-26901666,26901796-26901924,
26902697-26902894,26903138-26903356,26903461-26903699,
26903797-26903888,26904009-26904224,26904327-26904554,
26904631-26904722,26904806-26904899,26905475-26905567,
26905667-26906640,26906727-26906841,26907135-26908895
Length = 1687
Score = 31.1 bits (67), Expect = 0.84
Identities = 17/55 (30%), Positives = 30/55 (54%)
Frame = +3
Query: 282 DEKAELLADTLQTQCTPSTQSVDPVHVELVDSEVERRASLPPSDALPPVTPMEVK 446
DE A +L D S S+D + +E + +++ ++LPP+ LPP P +V+
Sbjct: 1574 DEAAPILEDRGMAPSVSSRLSLDEI-IE-ISCDLDAVSALPPAKPLPPQPPTQVR 1626
>04_04_0917 -
29404341-29404519,29404610-29404744,29404898-29405225,
29405313-29405532,29405653-29406647,29407233-29407493,
29407534-29407872,29409309-29409497
Length = 881
Score = 30.7 bits (66), Expect = 1.1
Identities = 22/54 (40%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Frame = +3
Query: 147 WSDFLEGLAPSQ--RSYYRLARTLKSDTVVTMPPLVGPSGRLAAFDDDEKAELL 302
WS+ L + S +S +RLAR L S + +P V PSG F EKA LL
Sbjct: 572 WSEQLVSVQTSTCIKSKFRLARLL-SFRLYNVPMDVSPSGICGPFKQPEKANLL 624
>02_04_0213 + 20974712-20975413
Length = 233
Score = 30.7 bits (66), Expect = 1.1
Identities = 28/94 (29%), Positives = 36/94 (38%), Gaps = 3/94 (3%)
Frame = +3
Query: 18 GTLRAKNASIRAYDRYPTAENRIRMRAL---QRDVKSRITEVRDARWSDFLEGLAPSQRS 188
G A A + A R E RM L RD ++ E D W DF + L
Sbjct: 58 GQAVAATAPVAAARRVDEEEEEERMDQLWERDRDARAGDEERMDLLWEDFNDELL----- 112
Query: 189 YYRLARTLKSDTVVTMPPLVGPSGRLAAFDDDEK 290
+L R + PP PS AA DDD++
Sbjct: 113 -LQLRRRQQQRAAAGTPPSPSPSPAAAADDDDDE 145
>04_04_0156 +
23160681-23160862,23161090-23161179,23163145-23163433,
23164574-23164669,23164755-23165123
Length = 341
Score = 29.1 bits (62), Expect = 3.4
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
Frame = +3
Query: 258 GRLAAFDDDEKAELLADTLQTQCTPSTQSVD---PVHVELVDSEVERRASL-PPS 410
G L +DD A+ + ++QC + D PVHV ++ + +A L PPS
Sbjct: 172 GPLRDYDDPANADFIESIKKSQCPQELEPADRRTPVHVNVIKRLEDYQAPLRPPS 226
>12_01_0626 - 5147763-5147879,5148175-5148255,5148336-5148506
Length = 122
Score = 28.7 bits (61), Expect = 4.5
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +3
Query: 390 RASLPPSDALPPVTPMEVKDLIKDLRPRKAPGSDGI 497
R S P LPP P + K L ++ +P A G+D I
Sbjct: 17 RMSFSPLGLLPPPDPQQQKPLRQERQPEMAIGADKI 52
>11_01_0448 -
3469398-3469676,3470015-3470284,3470386-3470476,
3470581-3470690,3470867-3471136,3471768-3471914
Length = 388
Score = 27.9 bits (59), Expect = 7.8
Identities = 17/38 (44%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Frame = +3
Query: 147 WSDFLEGLAPSQRSYYRL-ARTLKSDTVVTMPPLVGPS 257
W L+GLA + +YY+ AR K TVV++P GPS
Sbjct: 152 WCQGLDGLASREAAYYQQGARFAKWRTVVSIPN--GPS 187
>05_07_0112 -
27755604-27756449,27756624-27756887,27757428-27757532,
27757626-27758249,27759048-27759596,27759665-27760372,
27760449-27760658,27761266-27761421,27761524-27761664,
27762015-27762101,27762209-27762309,27763071-27763293,
27763384-27763548,27763621-27763713,27763801-27764292,
27764729-27764805,27765184-27765681,27765818-27766046
Length = 1855
Score = 27.9 bits (59), Expect = 7.8
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +3
Query: 375 SEVERRASLPPSDALPPVTPMEV 443
SEV RR PP LPP+ PM++
Sbjct: 178 SEVARRYYEPPQVMLPPLAPMQL 200
>04_03_0582 + 17528335-17529790,17529913-17531651,17531814-17532035,
17532062-17533525
Length = 1626
Score = 27.9 bits (59), Expect = 7.8
Identities = 34/142 (23%), Positives = 55/142 (38%), Gaps = 9/142 (6%)
Frame = +3
Query: 276 DDDEKAELLADTLQTQCTPSTQSVDPVHVELVDSEVERRASLPPSDALPPVTPMEVKD-- 449
D++ + L+T T Q V L V R +DA+ E K+
Sbjct: 836 DENGAIHSMTSVLETMATEYFQEVYKADPSLNPESVTRLFQEKVTDAMNEKLCQEFKEEE 895
Query: 450 ---LIKDLRPRKAPGSDGISNRVIK----LLPVQLIVMLASIFNAAMANCIFPAVWKEAD 608
I + P K+PG DG R + L +I+ + + F + + P +
Sbjct: 896 IAQAIFQIGPLKSPGPDGFPARFYQRNWGTLKSDIILAVRNFFQSG----LMPEGVNDTA 951
Query: 609 VIGIHKPGKPKNHPTSYRPISL 674
++ I K +P + YRPISL
Sbjct: 952 IVLIPKKDQPID-LKDYRPISL 972
>03_05_1007 -
29637911-29638333,29640095-29640282,29640688-29640773,
29641108-29641173,29641289-29641331,29641398-29642328
Length = 578
Score = 27.9 bits (59), Expect = 7.8
Identities = 13/21 (61%), Positives = 15/21 (71%), Gaps = 1/21 (4%)
Frame = -2
Query: 535 MSWTGRSLITRLDIP-SEPGA 476
MSW RSL T L+IP +PGA
Sbjct: 1 MSWLARSLATSLNIPEDDPGA 21
>03_05_0549 - 25444234-25446792
Length = 852
Score = 27.9 bits (59), Expect = 7.8
Identities = 29/103 (28%), Positives = 46/103 (44%), Gaps = 8/103 (7%)
Frame = +3
Query: 144 RWSDFLEGLAPSQRSYYRLARTLKS--DTVVTMPPLVGPSGRLAAFDDDEKA------EL 299
R+ ++ +A + R L R L+ DT V M +G LA +DD+ A L
Sbjct: 286 RFDANVKQMADNGRLQPLLTRLLRGEPDTRVAMADYLG---ELALANDDKAAVAEQAGPL 342
Query: 300 LADTLQTQCTPSTQSVDPVHVELVDSEVERRASLPPSDALPPV 428
L L+T TP+ ++ E+ SE + L + LPP+
Sbjct: 343 LVGMLRTGATPAKEATLKALREISSSEASAKLLLQRAGVLPPL 385
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,348,186
Number of Sequences: 37544
Number of extensions: 440681
Number of successful extensions: 1213
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1213
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1714968940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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